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Merge pull request spacetelescope#717 from spacetelescope/v0.26.0
Relase v0.26.0 [main]
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‎.github/workflows/ci.yml

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name: JWQL CI
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on: [push, pull_request]
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jobs:
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JWQL-CI:
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name: Python - ${{ matrix.python-version }}
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runs-on: ${{ matrix.os }}
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strategy:
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max-parallel: 5
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matrix:
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os: [ubuntu-latest, macos-latest]
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python-version: [3.7, 3.8]
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steps:
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- uses: actions/checkout@v2
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- uses: conda-incubator/setup-miniconda@v2
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with:
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activate-environment: jwql-${{ matrix.python-version }}
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- name: Build jwql conda environment and run tests
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shell: bash -l {0}
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run: |
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echo "Setting useful environment variables:"
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echo " "
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export PYTHONVERSION=${{ matrix.python-version }}
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export MAJOR="$(echo $PYTHONVERSION | head -c 1)"
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export MINOR="$(echo $PYTHONVERSION | tail -c 2)"
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echo "PYTHONVERSION: $PYTHONVERSION"
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echo " "
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echo "Installing jwql conda environment"
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echo " "
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cd $RUNNER_WORKSPACE/
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cd jwql/
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$CONDA/bin/conda env update -f environment_python_${MAJOR}_${MINOR}.yml -n jwql-${{ matrix.python-version }}
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echo " "
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echo "Installing jwql package"
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echo " "
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python setup.py develop
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echo " "
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echo "Testing package installation"
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echo " "
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python -c "import jwql; print('Version: ' + jwql.__version__); print('Path: ' + jwql.__path__[0])"
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# echo " "
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# echo "Reinstall numpy to fix numpy.core.multiarray error"
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# echo " "
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pip install -U numpy
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echo " "
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echo "The conda environment being used:"
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echo " "
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$CONDA/bin/conda env export
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echo " "
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echo "Running pytests"
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echo " "
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pytest jwql/tests/

‎.pep8speaks.yml

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pycodestyle:
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max-line-length: 100 # Default is 79 in PEP8
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ignore: # Errors and warnings to ignore
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- E501 # Line too long
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- E505
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only_mention_files_with_errors: True # If False, a separate status comment for each file is made.

‎.pyup.yml

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# update schedule
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# default: empty
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# allowed: "every day", "every week", ..
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schedule: "every week"
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schedule: "every month"
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# search for requirement files
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# default: True

‎CHANGES.rst

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0.26.0 (2021-03-30)
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===================
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New Features
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------------
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Project & API Documentation
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~~~~~~~~~~~~~~~~~~~~~~~~~~~
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- Included badges for GitHub Actions in ``README.md``
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- Replaced Jenkins support with GitHub Actions for CI testing
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- Removed Python 3.6 support
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Web Application
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~~~~~~~~~~~~~~~
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- Allow local developers to bypass ``auth.mast`` authentication
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- Added cosmic ray monitor, unit test code, and relevant database files
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- Removed unsupported options including image anomalies, unlooked images and monitors that haven't been implemented
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- Improved loading times for web app archive pages by generating a representative thumbnail with ``generate_proposal_thumbnail.py``, using ``astroquery.Mast`` rather than scraping filesystem, adding optional checks that file paths exist
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- Implemented JWQL Dashboard View
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``jwql`` Repository
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~~~~~~~~~~~~~~~~~~~
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- Updated the call to the JWST pipeline RSCD step
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- Added GitHub Actions
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Bug Fixes
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---------
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Web Application
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~~~~~~~~~~~~~~~
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- Improved loading times of readnoise monitor webpage
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- Fixed broken bokeh CDN links
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``jwql`` Repository
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~~~~~~~~~~~~~~~~~~~
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- Dark monitor exits gracefully when there are not enough files in the filesystem
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- Fixed filename parsing for WFS&C and AMI products
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- Adjusted generation of preview images such that images are created for all file types
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- Update ops naming convention in log directory
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0.25.0 (2020-12-31)
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===================
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New Features
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------------
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Project & API Documentation
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~~~~~~~~~~~~~~~~~~~~~~~~~~~
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- Added project citation information to ``README``, along with a Zenodo badge
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- Added API Documentation for ``bokeh`` templating software
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Web Application
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~~~~~~~~~~~~~~~
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- Reorganized and made aesthetic improvements to instrument landing pages to be more user-friendly
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- Enabled more dynamic search options and aesthetic improvements for anomaly query webpage
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- Added web app view for displaying a particular table of the ``jwqldb`` database
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- Added webpage for displaying Bias Monitor results with ``bokeh`` plots
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``jwql`` Repository
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~~~~~~~~~~~~~~~~~~~
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- Changed ``utils.credentials.py`` to always authenticate a MAST user with a user-identified token in the ``config.json`` file, instead of using a cached token, which was sometimes causes errors
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- Updated software to support the latest versions of ``django`` and ``bokeh``
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- Removed ``affected_tables`` column of ``monitor`` database table, as it stored redundant information
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- Updated the Readnoise Monitor to work for all JWST instruments
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Bug Fixes
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---------
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Web Application
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~~~~~~~~~~~~~~~
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- Fixed bug in Readnoise Monitor webpage that was causing the web app and ``jwql`` database to hang
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``jwql`` Repository
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~~~~~~~~~~~~~~~~~~~
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- Fixed bug that was causing the ``test_amplifier_info()`` test in ``test_instrument_properties.py`` to fail; truth values were updated to reflect a change in the format of the returned dictionaries from the ``amplifier_info()`` function
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- Fixed bug in ``get_header_info()`` that was causing ``test_data_containers.py`` to fail; the function expected the filename without the FITS extension, and the returned header info is in a dictionary (not a string)
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- Fixed bug in ``test_utils.py``, and changed ``utils.py`` to make it robust in matching upper and lowercase detector names
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- Updated ``utils.instrument_properties`` fix MIRI amplifier bounds calculation when omitting reference pixels
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0.24.0 (2020-10-20)
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===================
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New Features
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------------
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Project & API Documentation
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~~~~~~~~~~~~~~~~~~~~~~~~~~~
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- Added API documentation for Bias, Bad Pixel, and Readnoise Monitors
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Web Application
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~~~~~~~~~~~~~~~
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- Added webpage that describes how to use the JWQL web app API
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- Added webpage that enables a user to query the ``jwqldb`` database contents
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- Enabled more search options and aesthetic improvements for anomaly query webpage
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- Added webpage for displaying Readnoise Monitor results with ``bokeh`` plots
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- Added webpage for displaying Bad Pixel Monitor results with ``bokeh`` plots
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``jwql`` Repository
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~~~~~~~~~~~~~~~~~~~
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- Added support for Python versions 3.7 and 3.8
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- Added unit tests for Readnoise Monitor
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- Added unit tests for Bias Monitor
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- Added unit tests for Bad Pixel Monitor
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- Added unit tests for ``bokeh`` templating library
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Bug Fixes
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---------
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Project & API Documentation
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~~~~~~~~~~~~~~~~~~~~~~~~~~~
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- Updated broken links to JWST instrument JDox pages
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Web Application
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~~~~~~~~~~~~~~~
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- Fixed various issues that was cuasing authentication through ``auth.mast`` to fail
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``jwql`` Repository
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~~~~~~~~~~~~~~~~~~~
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- Fixed bug that was causing Dark Monitor to crash on recently added apertures from ``pysiaf``
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- Fixed several bugs in ``bokeh`` templating library
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- Fixed bug that was causing unit tests for ``permissions.py`` to fail
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- Fixed bug that was causing ``most_recent_search`` function in Dark Monitor to fail
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0.23.0 (2020-07-01)
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===================
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New Features
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------------
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Project & API Documentation
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~~~~~~~~~~~~~~~~~~~~~~~~~~~
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- The ``jwql_web_app`` PowerPoint presentation has been updated
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- The bokeh templating software now has full API documentation
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- Updated ``README`` and About webpage to reflect changes to development team members
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Web Application
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~~~~~~~~~~~~~~~
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- Added webpage to view FITS headers of each extension for a given dataset
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- Added webpage for displaying Dark Monitor results with ``bokeh`` plots
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- Added webpage for viewing contents of a given JWQL database table
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- Added webpage for querying and displaying anomaly results
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- Added slider bar for easily navigating through integrations in preview image display
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- The list of anomalies one can flag in a preview image is now instrument specific
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``jwql`` Repository
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~~~~~~~~~~~~~~~~~~~
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- The ``jwql-3.6`` conda environment now uses the ``astroconda`` channel instead of ``astroconda-dev``
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- Added Bias Monitor module, which currently monitors the bias levels for NIRCam
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- Added Readnoise Monitor module, which monitors readnoise for all instruments except FGS
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- Added Bad Pixel Monitor module, which tracks bad pixels for all instruments
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- Cron job logs now include a print out of the complete ``conda`` environment being used
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Bug Fixes
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---------
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Project & API Documentation
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~~~~~~~~~~~~~~~~~~~~~~~~~~~
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- Fixed broken link to ``numpydoc`` docstring convention in Style Guide
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0.22.0 (2019-08-26)
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===================
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‎Jenkinsfile

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‎JenkinsfileRT

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