torchio/.github/workflows/tests.yml at main · TorchIO-project/torchio · GitHub

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name: Tests

on:
  push:
    branches:
      - main
  pull_request:
  workflow_dispatch:
  schedule:
    - cron: "0 4 * * *"

permissions:
  contents: read

env:
  FORCE_COLOR: 1

jobs:
  pytest:
    name: Unit tests
    strategy:
      matrix:
        os: [ubuntu-latest, macos-latest, windows-latest]
        python: ["3.10", "3.11", "3.12", "3.13", "3.14"]
      fail-fast: false

    runs-on: ${{ matrix.os }}
    env:
      OS: ${{ matrix.os }}

    steps:
      - name: Checkout repository
        uses: actions/checkout@v6
        with:
          fetch-depth: 0

      - name: Install the latest version of uv
        uses: astral-sh/setup-uv@v7

      - name: Install tox
        run: uv tool install --python ${{ matrix.python }} --with tox-uv tox

      - name: Add local bin to path on Windows
        if: runner.os == 'Windows'
        run: echo "C:/Users/runneradmin/.local/bin" >> $GITHUB_PATH
        shell: bash

      - name: Setup test suite
        run: tox run -v --notest --skip-missing-interpreters false -e ${{ matrix.python }}

      # Run all tests on schedule, but only non-slow tests on push.
      # Use the coverage env on ubuntu/3.14 to generate coverage.xml for Codecov.
      - name: Run pytest
        run: |
          if [ "${{ matrix.os }}" == "ubuntu-latest" ] && [ "${{ matrix.python }}" == "3.14" ]; then
            TOX_ENV=coverage
          else
            TOX_ENV=pytest
          fi
          if [ "${{ github.event_name }}" == "schedule" ]; then
            tox -e $TOX_ENV
          else
            tox -e $TOX_ENV -- -m "not slow"
          fi
        shell: bash # this wouldn't work on Powershell

      - name: Upload coverage reports to Codecov
        if: ${{ matrix.os == 'ubuntu-latest' && matrix.python == '3.14' }}
        uses: codecov/codecov-action@v6.0.0
        env:
          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

  cli:
    name: CLI smoke tests
    runs-on: ubuntu-latest

    steps:
      - name: Checkout repository
        uses: actions/checkout@v6
        with:
          fetch-depth: 0

      - name: Install uv
        uses: astral-sh/setup-uv@v7

      - name: Test transforms CLI tool
        run: uv run -- tiotr --help

      - name: Test info CLI tool
        run: uv run -- tiohd --help