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Redesign Redis databases to support arbitrary properties on identifiers and cliques #306

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gaurav opened this issue Feb 7, 2025 · 1 comment
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@gaurav
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gaurav commented Feb 7, 2025

@gaurav
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gaurav commented Feb 12, 2025

Here's what the Redis databases look like right now:

Redis DB name Database name Count Example Key Example Value
id-id eq_id_to_id_db 675,693,472 MESH:D014867 CHEBI:15377
id-eq-id id_to_eqids_db 481,687,260 CHEBI:15377 [{"i": "CHEBI:15377", "l": "water", "d": ["An oxygen hydride consisting of an oxygen atom that is covalently bonded to two hydrogen atoms"], "t": []}, {"i": "UNII:059QF0KO0R", "l": "WATER", "d": [], "t": []}, {"i": "PUBCHEM.COMPOUND:962", "l": "Water", "d": [], "t": []}, {"i": "CHEMBL.COMPOUND:CHEMBL1098659", "l": "WATER", "d": [], "t": []}, {"i": "DRUGBANK:DB09145", "l": "Water", "d": [], "t": []}, {"i": "MESH:D014867", "l": "Water", "d": [], "t": []}, {"i": "CAS:7732-18-5", "d": [], "t": []}, {"i": "HMDB:HMDB0002111", "l": "Water", "d": [], "t": []}, {"i": "KEGG.COMPOUND:C00001", "l": "H2O", "d": [], "t": []}, {"i": "INCHIKEY:XLYOFNOQVPJJNP-UHFFFAOYSA-N", "d": [], "t": []}, {"i": "UMLS:C0043047", "l": "water", "d": [], "t": []}, {"i": "RXCUI:11295", "d": [], "t": []}]
id-categories id_to_type_db 481,687,260 CHEBI:15377 biolink:SmallMolecule
conflation-db gene_protein_db 20,709,878 NCBIGene:469389 ["NCBIGene:469389", "UniProtKB:H2PZG5"]
info-content info_content_db 3,367,948 CHEBI:15377 “47.67114961005408”
chemical-drug-db chemical_drug_db 107,321 UNII:63M8RYN44N ["CHEBI:15377", "CHEBI:33813", "UNII:63M8RYN44N", "RXCUI:150985", "RXCUI:204918", "RXCUI:340584", "RXCUI:379002", "RXCUI:1043588", "RXCUI:1045437", "RXCUI:1045439", "RXCUI:1053147", "RXCUI:1053148", "RXCUI:1053153", "RXCUI:1053154", "RXCUI:1053172", "RXCUI:1053173", "RXCUI:1053428", "RXCUI:1053429", "RXCUI:1151100", "RXCUI:1151101", "RXCUI:1161792", "RXCUI:1161794", "RXCUI:1161795", "RXCUI:1180556", "RXCUI:1235498", "RXCUI:1235499", "RXCUI:1235500", "RXCUI:1235501", "RXCUI:1235502", "RXCUI:1235503", "RXCUI:1235504", "RXCUI:1423320", "RXCUI:1423321", "RXCUI:1424601", "RXCUI:1424602", "RXCUI:1424603", "RXCUI:1424604", "RXCUI:1424605", "RXCUI:1425974", "RXCUI:1425975", "RXCUI:1425976", "RXCUI:1425977", "RXCUI:1425978", "RXCUI:1489375", "RXCUI:1489376", "RXCUI:1489377", "RXCUI:1489378", "RXCUI:1539535", "RXCUI:1549851", "RXCUI:1549852", "RXCUI:1549853", "RXCUI:1549854", "RXCUI:1549855", "RXCUI:2108561", "RXCUI:2282752", "RXCUI:2282753", "RXCUI:2360606", "RXCUI:2360607", "RXCUI:2360608", "RXCUI:2360609", "RXCUI:2360610", "UMLS:C0359299", "UMLS:C3857954", "UMLS:C1883551"]
semantic-count curie_to_bl_type_db 135 biolink:Gene {"NCBIGene": 58008124, "ENSEMBL": 15105103, "HGNC": 43973, "UMLS": 46870, "RGD": 91426, "MGI": 80230, "ZFIN": 38079, "WormBase": 48777, "OMIM": 17512, "FB": 30254, "dictyBase": 13892, "SGD": 7167}

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