publications.yml

- author:
  - family: Seidman
    given: Jessica C.
  - family: Aiemjoy
    given: Kristen
  - family: Adnan
    given: Mehreen
  - family: Dehraj
    given: Irum Fatima
  - family: Iqbal
    given: Junaid
  - family: Iqbal
    given: Khalid
  - family: Irfan
    given: Seema
  - family: Islam
    given: Nahidul
  - family: Kabir
    given: Md. Shakiul
  - family: Katuwal
    given: Nishan
  - family: Maria
    given: Noshi
  - family: Memon
    given: Muhammad Ashraf
  - family: Munira
    given: Sira Jam
  - family: Naga
    given: Shiva Ram
  - family: Pradhan
    given: Sailesh
  - family: Sarkar
    given: Anik
  - family: Shrestha
    given: Rajeev
  - family: Shrestha
    given: Sony
  - family: Al Sium
    given: Syed Muktadir
  - family: Vaidya
    given: Krista
  - family: Morrison
    given: Douglas Ezra
  - family: Carter
    given: Alice S.
  - family: Saha
    given: Senjuti
  - family: Tamrakar
    given: Dipesh
  - family: Yousafzai
    given: Mohammad Tahir
  - family: Garrett
    given: Denise O.
  - family: Luby
    given: Stephen P.
  - family: Qamar
    given: Farah Naz
  - family: Saha
    given: Samir
  - family: Andrews
    given: Jason R.
  - family: Charles
    given: Richelle C.
  doi: 10.1101/2025.06.20.25329792
  id: Seidman_2025
  issued: 2025
  publisher: openRxiv
  title: Evaluating the accuracy of \<i\>salmonella\</i\> typhi
    hemolysin e and lipopolysaccharide IgA to discriminate enteric fever
    from other febrile illnesses in south asia
  type: article-journal
  url: "https://doi.org/10.1101/2025.06.20.25329792"
  date: 2025-06
  path: https://doi.org/10.1101/2025.06.20.25329792
  highlight: 1
  categories: [preprint]
- author:
  - family: Saiprom
    given: Natnaree
  - family: Nimnuan-ngam
    given: Supichaya
  - family: Phunpang
    given: Rungnapa
  - family: Schildhauer
    given: Samuel Hisaji
  - family: Morrison
    given: Ezra
  - family: Tandhavanant
    given: Sarunporn
  - family: Chandna
    given: Arjun
  - family: Sengyee
    given: Sineenart
  - family: West
    given: T. Eoin
  - family: Burtnick
    given: Mary N.
  - family: Brett
    given: Paul J.
  - family: Chantratita
    given: Narisara
  - family: Aiemjoy
    given: Kristen
  doi: 10.2139/ssrn.5312903
  id: Saiprom_2025
  issued: 2025
  publisher: Elsevier BV
  title: "Longitudinal profiling of antibody responses to burkholderia
    pseudomallei: Implications for diagnosis and surveillance"
  title-short: Longitudinal profiling of antibody responses to
    burkholderia pseudomallei
  type: article-journal
  url: "http://dx.doi.org/10.2139/ssrn.5312903"
  date: 2025-06-23
  path: https://doi.org/10.2139/ssrn.5312903
  highlight: 1
  categories: [preprint]
- author:
  - family: Lai
    given: Kristina W.
  - family: Orwa
    given: Chris
  - family: Seidman
    given: Jessica C.
  - family: Garrett
    given: Denise O.
  - family: Saha
    given: Samir K.
  - family: Tamrakar
    given: Dipesh
  - family: Qamar
    given: Farah Naz
  - family: Charles
    given: Richelle C.
  - family: Andrews
    given: Jason R.
  - family: Teunis
    given: Peter
  - family: Aiemjoy
    given: Kristen
  - family: Morrison
    given: Douglas Ezra
  doi: 10.1101/2025.06.04.25328941
  id: Lai_2025
  issued: 2025
  publisher: openRxiv
  title: Serocalculator, an r package for estimating seroincidence from
    cross-sectional serological data
  type: article-journal
  url: "https://doi.org/10.1101/2025.06.04.25328941"
  date: 2025-10
  path: https://doi.org/10.1101/2025.06.04.25328941
  highlight: 0
  categories: [preprint]
- author:
  - family: Munira
    given: Sira Jam
  - family: Kanon
    given: Naito
  - family: Islam
    given: Nahidul
  - family: Kabir
    given: Md Shakiul
  - family: Sarkar
    given: Anik
  - family: Polash
    given: Shamsul Alam
  - family: Rahman
    given: Hafizur
  - family: Carter
    given: Alice S
  - family: Charles
    given: Richelle C
  - family: Andrews
    given: Jason R
  - family: Luby
    given: Stephen P
  - family: Aiemjoy
    given: Kristen
  - family: Garrett
    given: Denise O
  - family: Saha
    given: Samir K
  - family: Seidman
    given: Jessica C
  - family: Saha
    given: Senjuti
  container-title: Open Forum Infectious Diseases
  doi: 10.1093/ofid/ofag197
  id: Munira_2026
  issn: 2328-8957
  issue: 5
  issued: 2026-04
  publisher: Oxford University Press (OUP)
  title: Estimating enteric fever seroincidence in bangladesh using
    rapid serosurveys
  type: article-journal
  url: "http://dx.doi.org/10.1093/ofid/ofag197"
  volume: 13
  journal-title: '*Open Forum Infectious Diseases*'
  date: 2026-04
  path: https://doi.org/10.1093/ofid/ofag197
  highlight: 0
- author:
  - family: Tamrakar
    given: Dipesh
  - family: Naga
    given: Shiva Ram
  - family: Jung
    given: Esther
  - family: Shrestha
    given: Basudha
  - family: Bista Roka
    given: Pratibha
  - family: Pokharel
    given: Rabin
  - family: Shahi
    given: Sabin Bikram
  - family: Bajracharya
    given: Aarjya Tara
  - family: Mahadup
    given: Surendra K.
  - family: Katuwal
    given: Nishan
  - family: Doyle
    given: Kate
  - family: Seidman
    given: Jessica C.
  - family: Carter
    given: Alice S.
  - family: Luby
    given: Stephen P.
  - family: Bogoch
    given: Isaac I.
  - family: Aiemjoy
    given: Kristen
  - family: Garrett
    given: Denise O.
  - family: Shrestha
    given: Rajeev
  - family: Andrews
    given: Jason R.
  container-title: PLOS Neglected Tropical Diseases
  doi: 10.1371/journal.pntd.0013242
  editor:
  - family: Bowen
    given: Richard A.
  id: Tamrakar_2026
  issn: 1935-2735
  issue: 1
  issued: 2026-01
  page: e0013242
  publisher: Public Library of Science (PLoS)
  title: Impact of the COVID-19 pandemic and typhoid conjugate vaccine
    introduction on typhoid fever in nepal
  type: article-journal
  url: "http://dx.doi.org/10.1371/journal.pntd.0013242"
  volume: 20
  journal-title: '*PLOS Neglected Tropical Diseases*'
  date: 2026-01
  path: https://doi.org/10.1371/journal.pntd.0013242
  highlight: 0
- author:
  - family: Kamau
    given: Everlyn
  - family: Ante-Testard
    given: Pearl Anne
  - family: Gwyn
    given: Sarah
  - family: Blumberg
    given: Seth
  - family: Abdalla
    given: Zeinab
  - family: Aiemjoy
    given: Kristen
  - family: Amza
    given: Abdou
  - family: Aragie
    given: Solomon
  - family: Arzika
    given: Ahmed M.
  - family: Awoussi
    given: Marcel S.
  - family: Bailey
    given: Robin L.
  - family: Butcher
    given: Robert
  - family: Callahan
    given: E. Kelly
  - family: Chaima
    given: David
  - family: Dawed
    given: Adisu Abebe
  - family: Díaz
    given: Martha Idalí Saboyá
  - family: Domingo
    given: Abou-Bakr Sidik
  - family: Drakeley
    given: Chris
  - family: Elshafie
    given: Belgesa E.
  - family: Emerson
    given: Paul M.
  - family: Fornace
    given: Kimberly
  - family: Gass
    given: Katherine
  - family: Goodhew
    given: E. Brook
  - family: Hammou
    given: Jaouad
  - family: Harding-Esch
    given: Emma M.
  - family: Hooper
    given: PJ
  - family: Kadri
    given: Boubacar
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    given: Khumbo
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  - family: Kello
    given: Amir B.
  - family: Ko
    given: Robert
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    given: Patrick J.
  - family: Lescano
    given: Andres G.
  - family: Maliki
    given: Ramatou
  - family: Masika
    given: Michael Peter
  - family: Migchelsen
    given: Stephanie J.
  - family: Nassirou
    given: Beido
  - family: Nesemann
    given: John M.
  - family: Parameswaran
    given: Nishanth
  - family: Pomat
    given: Willie
  - family: Renneker
    given: Kristen K.
  - family: Roberts
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    given: Ariktha
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    given: Fasihah
  - family: Taylor
    given: Emma Michelle
  - family: Tekeraoi
    given: Rabebe
  - family: Togbey
    given: Kwamy
  - family: West
    given: Sheila K.
  - family: Wickens
    given: Karana
  - family: William
    given: Timothy
  - family: Wittberg
    given: Dionna M.
  - family: Yeboah-Manu
    given: Dorothy
  - family: Youbi
    given: Mohammed
  - family: Zeru
    given: Taye
  - family: Keenan
    given: Jeremy D.
  - family: Lietman
    given: Thomas M.
  - family: Solomon
    given: Anthony W.
  - family: Nash
    given: Scott D.
  - family: Martin
    given: Diana L.
  - family: Arnold
    given: Benjamin F.
  container-title: Nature Communications
  doi: 10.1038/s41467-025-60581-z
  id: Kamau_2025
  issn: 2041-1723
  issue: 1
  issued: 2025
  publisher: Springer Science and Business Media LLC
  title: Characterizing trachoma elimination using serology
  type: article-journal
  url: "http://dx.doi.org/10.1038/s41467-025-60581-z"
  volume: 16
  journal-title: '*Nature Communications*'
  date: 2025-07
  path: https://doi.org/10.1038/s41467-025-60581-z
  highlight: 0
- author:
  - family: Abraham
    given: Dilip
  - family: Kathiresan
    given: Lalithambigai
  - family: Sasikumar
    given: Midhun
  - family: Aiemjoy
    given: Kristen
  - family: Charles
    given: Richelle C.
  - family: Kumar
    given: Dilesh
  - family: Srinivasan
    given: Rajan
  - family: Troman
    given: Catherine
  - family: Gray
    given: Elizabeth
  - family: Uzzell
    given: Christopher B.
  - family: John
    given: Jacob
  - family: Veeraraghavan
    given: Balaji
  - family: Grassly
    given: Nicholas C.
  - family: Mohan
    given: Venkata Raghava
  container-title: PLOS Neglected Tropical Diseases
  doi: 10.1371/journal.pntd.0012373
  editor:
  - family: Diemert
    given: David J.
  id: Abraham_2025
  issn: 1935-2735
  issue: 3
  issued: 2025-03
  page: e0012373
  publisher: Public Library of Science (PLoS)
  title: Wastewater surveillance for salmonella typhi and its
    association with seroincidence of enteric fever in vellore, india
  type: article-journal
  url: "http://dx.doi.org/10.1371/journal.pntd.0012373"
  volume: 19
  journal-title: '*PLOS Neglected Tropical Diseases*'
  date: 2025-03
  path: https://doi.org/10.1371/journal.pntd.0012373
  highlight: 0
- author:
  - family: Teunis
    given: Peter F. M.
  - family: Seidman
    given: Jessica C.
  - family: Tamrakar
    given: Dipesh
  - family: Qamar
    given: Farah Naz
  - family: Saha
    given: Samir K.
  - family: Garrett
    given: Denise O.
  - family: Andrews
    given: Jason R.
  - family: Charles
    given: Richelle C.
  - family: Aiemjoy
    given: Kristen
  container-title: Epidemics
  doi: 10.1016/j.epidem.2025.100874
  id: Teunis_2026
  issn: 1755-4365
  issued: 2026-03
  page: 100874
  publisher: Elsevier BV
  title: Seroresponse to repeated infections with salmonella enterica
    typhi and paratyphi a
  type: article-journal
  url: "http://dx.doi.org/10.1016/j.epidem.2025.100874"
  volume: 54
  journal-title: '*Epidemics*'
  date: 2026-03
  path: https://doi.org/10.1016/j.epidem.2025.100874
  highlight: 0
- author:
  - family: Garrett
    given: Denise O
  - family: Longley
    given: Ashley T
  - family: Aiemjoy
    given: Kristen
  - family: Yousafzai
    given: Mohammad T
  - family: Hemlock
    given: Caitlin
  - family: Yu
    given: Alexander T
  - family: Vaidya
    given: Krista
  - family: Tamrakar
    given: Dipesh
  - family: Saha
    given: Shampa
  - family: Bogoch
    given: Isaac I
  - family: Date
    given: Kashmira
  - family: Saha
    given: Senjuti
  - family: Islam
    given: Mohammad Shahidul
  - family: Sayeed
    given: K M Ishtiaque
  - family: Bern
    given: Caryn
  - family: Shakoor
    given: Sadia
  - family: Dehraj
    given: Irum F
  - family: Mehmood
    given: Junaid
  - family: Sajib
    given: Mohammad S I
  - family: Islam
    given: Maksuda
  - family: Thobani
    given: Rozina S
  - family: Hotwani
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    given: Najeeb
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    given: Seema
  - family: Naga
    given: Shiva R
  - family: Memon
    given: Ashraf M
  - family: Pradhan
    given: Sailesh
  - family: Iqbal
    given: Khalid
  - family: Shrestha
    given: Rajeev
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    given: Hafizur
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    given: Md Mahmudul
  - family: Qazi
    given: Saqib H
  - family: Kazi
    given: Abdul M
  - family: Saddal
    given: Nasir S
  - family: Jamal
    given: Raza
  - family: Hunzai
    given: Mohammed J
  - family: Hossain
    given: Tanvir
  - family: Marks
    given: Florian
  - family: Carter
    given: Alice S
  - family: Seidman
    given: Jessica C
  - family: Qamar
    given: Farah N
  - family: Saha
    given: Samir K
  - family: Andrews
    given: Jason R
  - family: Luby
    given: Stephen P
  container-title: The Lancet Global Health
  doi: 10.1016/s2214-109x(22)00119-x
  id: Garrett_2022
  issn: 2214-109X
  issue: 7
  issued: 2022
  page: e978-e988
  publisher: Elsevier BV
  title: "Incidence of typhoid and paratyphoid fever in bangladesh,
    nepal, and pakistan: Results of the surveillance for enteric fever
    in asia project"
  title-short: Incidence of typhoid and paratyphoid fever in bangladesh,
    nepal, and pakistan
  type: article-journal
  url: "http://dx.doi.org/10.1016/S2214-109X(22)00119-X"
  volume: 10
  journal-title: '*The Lancet Global Health*'
  date: 2022-07
  path: https://doi.org/10.1016/s2214-109x(22)00119-x
  highlight: 0
- author:
  - family: Morrison
    given: Doug
  - family: Laeyendecker
    given: Oliver
  - family: Brookmeyer
    given: Ron
  container-title: Statistics in Medicine
  doi: 10.1002/sim.8196
  id: Morrison_2019
  issn: 1097-0258
  issue: 19
  issued: 2019-05
  page: 3614-3627
  publisher: Wiley
  title: Cross‐sectional HIV incidence estimation in an evolving
    epidemic
  type: article-journal
  url: "http://dx.doi.org/10.1002/sim.8196"
  volume: 38
  journal-title: '*Statistics in Medicine*'
  date: 2019-05
  path: https://doi.org/10.1002/sim.8196
  highlight: 0
- author:
  - family: Katuwal
    given: Nishan
  - family: Thapa
    given: Melina
  - family: Shrestha
    given: Sony
  - family: Vaidya
    given: Krista
  - family: Bogoch
    given: Isaac I.
  - family: Shrestha
    given: Rajeev
  - family: Andrews
    given: Jason R.
  - family: Tamrakar
    given: Dipesh
  - family: Aiemjoy
    given: Kristen
  container-title: PLOS Neglected Tropical Diseases
  doi: 10.1371/journal.pntd.0012375
  editor:
  - family: Poonawala
    given: Husain
  id: Katuwal_2024
  issn: 1935-2735
  issue: 8
  issued: 2024-08
  page: e0012375
  publisher: Public Library of Science (PLoS)
  title: "Hepatitis e virus in the kathmandu valley: Insights from a
    representative longitudinal serosurvey"
  title-short: Hepatitis e virus in the kathmandu valley
  type: article-journal
  url: "http://dx.doi.org/10.1371/journal.pntd.0012375"
  volume: 18
  journal-title: '*PLOS Neglected Tropical Diseases*'
  date: 2024-08
  path: https://doi.org/10.1371/journal.pntd.0012375
  highlight: 0
- author:
  - family: Aiemjoy
    given: Kristen
  - family: Katuwal
    given: Nishan
  - family: Vaidya
    given: Krista
  - family: Shrestha
    given: Sony
  - family: Thapa
    given: Melina
  - family: Teunis
    given: Peter
  - family: Bogoch
    given: Isaac I.
  - family: Trowbridge
    given: Paul
  - family: Blacksell
    given: Stuart D.
  - family: Paris
    given: Daniel H.
  - family: Wangrangsimakul
    given: Tri
  - family: Varghese
    given: George M.
  - family: Maude
    given: Richard J.
  - family: Tamrakar
    given: Dipesh
  - family: Andrews
    given: Jason R.
  container-title: The American Journal of Tropical Medicine and Hygiene
  doi: 10.4269/ajtmh.23-0475
  id: Aiemjoy_2024
  issn: 1476-1645
  issue: 2
  issued: 2024-08
  page: 267-276
  publisher: American Society of Tropical Medicine and Hygiene
  title: Estimating the seroincidence of scrub typhus using antibody
    dynamics after infection
  type: article-journal
  url: "http://dx.doi.org/10.4269/ajtmh.23-0475"
  volume: 111
  journal-title: '*The American Journal of Tropical Medicine and Hygiene*'
  date: 2024-08
  path: https://doi.org/10.4269/ajtmh.23-0475
  highlight: 0
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  - family: Looareesuwan
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  - family: Aiemjoy
    given: Kristen
  - family: Charoensakulchai
    given: Sakarn
  - family: Thaipadungpanit
    given: Janjira
  - family: Wongsantichon
    given: Jantana
  - family: Tanganuchitcharnchai
    given: Ampai
  - family: Rungrojn
    given: Artharee
  - family: Blacksell
    given: Stuart D
  - family: Matsee
    given: Wasin
  container-title: Journal of Travel Medicine
  doi: 10.1093/jtm/taad143
  id: Looareesuwan_2023
  issn: 1708-8305
  issue: 8
  issued: 2023-11
  publisher: Oxford University Press (OUP)
  title: Diagnostic challenges and antibody kinetics in a paediatric
    traveller with scrub typhus
  type: article-journal
  url: "http://dx.doi.org/10.1093/jtm/taad143"
  volume: 30
  journal-title: '*Journal of Travel Medicine*'
  date: 2023-11
  path: https://doi.org/10.1093/jtm/taad143
  highlight: 0
- author:
  - family: Teunis
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  - family: Wang
    given: Yuke
  - family: Aiemjoy
    given: Kristen
  - family: Kretzschmar
    given: Mirjam
  - family: Aerts
    given: Marc
  container-title: Statistics in Medicine
  doi: 10.1002/sim.9906
  id: Teunis_2023
  issn: 1097-0258
  issue: 28
  issued: 2023
  page: 5160-5188
  publisher: Wiley
  title: Estimating seroconversion rates accounting for repeated
    infections by approximate bayesian computation
  type: article-journal
  url: "http://dx.doi.org/10.1002/sim.9906"
  volume: 42
  journal-title: '*Statistics in Medicine*'
  date: 2023-09
  path: https://doi.org/10.1002/sim.9906
  highlight: 0
- author:
  - family: Aiemjoy
    given: Kristen
  - family: Seidman
    given: Jessica C
  - family: Charles
    given: Richelle C
  - family: Andrews
    given: Jason R
  container-title: Open Forum Infectious Diseases
  doi: 10.1093/ofid/ofad021
  id: Aiemjoy_2023
  issn: 2328-8957
  issue: Supplement_1
  issued: 2023-05
  page: S21-S25
  publisher: Oxford University Press (OUP)
  title: "Seroepidemiology for enteric fever: Emerging approaches and
    opportunities"
  title-short: Seroepidemiology for enteric fever
  type: article-journal
  url: "http://dx.doi.org/10.1093/ofid/ofad021"
  volume: 10
  journal-title: '*Open Forum Infectious Diseases*'
  date: 2023-05
  path: https://doi.org/10.1093/ofid/ofad021
  highlight: 0
- author:
  - family: Aiemjoy
    given: Kristen
  - family: Rumunu
    given: John
  - family: Hassen
    given: Juma John
  - family: Wiens
    given: Kirsten E.
  - family: Garrett
    given: Denise
  - family: Kamenskaya
    given: Polina
  - family: Harris
    given: Jason B.
  - family: Azman
    given: Andrew S.
  - family: Teunis
    given: Peter
  - family: Seidman
    given: Jessica C.
  - family: Wamala
    given: Joseph F.
  - family: Andrews
    given: Jason R.
  - family: Charles
    given: Richelle C.
  container-title: Emerging Infectious Diseases
  doi: 10.3201/eid2811.220239
  id: Aiemjoy_2022
  issn: 1080-6059
  issue: 11
  issued: 2022-11
  publisher: Centers for Disease Control and Prevention (CDC)
  title: Seroincidence of enteric fever, juba, south sudan
  type: article-journal
  url: "http://dx.doi.org/10.3201/eid2811.220239"
  volume: 28
  journal-title: '*Emerging Infectious Diseases*'
  date: 2022-11
  path: https://doi.org/10.3201/eid2811.220239
  highlight: 0
- author:
  - family: Aiemjoy
    given: Kristen
  - family: Seidman
    given: Jessica C
  - family: Saha
    given: Senjuti
  - family: Munira
    given: Sira Jam
  - family: Islam Sajib
    given: Mohammad Saiful
  - family: Sium
    given: Syed Muktadir Al
  - family: Sarkar
    given: Anik
  - family: Alam
    given: Nusrat
  - family: Zahan
    given: Farha Nusrat
  - family: Kabir
    given: Md Shakiul
  - family: Tamrakar
    given: Dipesh
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  id: Aiemjoy_2022
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  issued: 2022-08
  page: e578-e587
  publisher: Elsevier BV
  title: "Estimating typhoid incidence from community-based serosurveys:
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  title-short: Estimating typhoid incidence from community-based
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  type: article-journal
  url: "http://dx.doi.org/10.1016/S2666-5247(22)00114-8"
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  issn: 1935-2735
  issue: 9
  issued: 2020
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  publisher: Public Library of Science (PLoS)
  title: Seroprevalence of antibodies against chlamydia trachomatis and
    enteropathogens and distance to the nearest water source among young
    children in the amhara region of ethiopia
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  issn: 1541-0420
  issue: 3
  issued: 2021-05
  page: 908-921
  publisher: Oxford University Press (OUP)
  title: "Regression with interval‐censored covariates: Application to
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  title-short: Regression with interval‐censored covariates
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  doi: 10.1515/scid-2017-0003
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  issn: 2194-6310
  issue: 1
  issued: 2018
  publisher: Walter de Gruyter GmbH
  title: Cross-sectional HIV incidence estimation with missing
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  url: "http://dx.doi.org/10.1515/scid-2017-0003"
  volume: 10
  journal-title: '*Statistical Communications in Infectious Diseases*'
  date: 2018-07
  path: https://doi.org/10.1515/scid-2017-0003
  highlight: 0