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From my quick look, this is called a Sankey tree, and the method for creating these trees seems to be pulled from another app developed in Martin Steineggers lab here: https://github.com/steineggerlab/Metabuli
Looking at the license, we might be able to pull the code for generating this tree out, though I'm not sure how much work that might be.
Similar to what foldseek.com has
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