Extra specific configuration for rnafusion pipeline
To use, run the pipeline with -profile hasta.
This will download and launch the rnafusion specific hasta.config which has been pre-configured with a setup suitable for the HASTA cluster.
Example: nextflow run nf-core/rnafusion -profile hasta
Specific configurations for HASTA has been made for rnafusion.
- Always run all the analysis steps (all = true)
- Use trimming (trim = true)
- Take the fusions identified by at least 2 fusion detection tools to the fusioninspector analysis (fusioninspector_filter = true)