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cran-comments.md

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Resubmission changes

This resubmission addresses all the points raised by the reviewer:

  1. Expanded DESCRIPTION field

    • Added more details on package functionality and implemented methods.
    • Included relevant references in the required format.

  2. Added \value{} tags

    • Included \value{} sections in all relevant .Rd files (blsd.Rd, extractor.Rd, prep_dataset.Rd, taxa_counts.Rd).
    • The install_polars function has been removed, as all other functions now prompt users to install polars if needed.
    • Clearly described function outputs, including their structure and meaning.

  3. Improved examples in .Rd files

    • Added examples for exported functions.
    • Since all functions require large sequencing data, examples are wrapped in \dontrun{} to prevent execution during checks.

  4. Ensured compliance with CRAN file writing policies
    Removed any default file paths in functions that write data (including extract_kraken_output() and prep_dataset())

  5. Non-standard file/directory found at top level: 'rsahmi.Rmd' remote the the file

Thank you for your time and consideration.

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0 errors | 0 warnings | 1 note

  • This is a new release.