-
source/dentist/commands/collectPileUps/filter.d -
source/dentist/commands/collectPileUps/package.d -
source/dentist/commands/collectPileUps/pileups.d -
source/dentist/commandline.d -
source/dentist/commands/bed2mask.d -
source/dentist/commands/buildPartialAssembly.d -
source/dentist/commands/chainLocalAlignments.d -
source/dentist/commands/checkResults.d -
source/dentist/commands/checkScaffolding.d -
source/dentist/commands/filterMask.d -
source/dentist/commands/findClosableGaps.d -
source/dentist/commands/generateDazzlerOptions.d -
source/dentist/commands/maskRepetitiveRegions.d -
source/dentist/commands/mergeInsertions.d -
source/dentist/commands/mergeMasks.d -
source/dentist/commands/output.d -
source/dentist/commands/package.d -
source/dentist/commands/processPileUps/cropper.d -
source/dentist/commands/processPileUps/package.d -
source/dentist/commands/propagateMask.d -
source/dentist/commands/showInsertions.d -
source/dentist/commands/showMask.d -
source/dentist/commands/showPileUps.d -
source/dentist/commands/translateCoords.d -
source/dentist/commands/translocateGaps.d -
source/dentist/commands/validateConfig.d -
source/dentist/commands/validateRegions.d -
source/dentist/common/alignments/base.d -
source/dentist/common/alignments/chaining.d -
source/dentist/common/alignments/package.d -
source/dentist/common/binio/insertiondb.d -
source/dentist/common/binio/package.d -
source/dentist/common/binio/pileupdb.d -
source/dentist/common/binio/shared.d -
source/dentist/common/commands.d -
source/dentist/common/configfile.d -
source/dentist/common/external.d -
source/dentist/common/insertions.d -
source/dentist/common/package.d -
source/dentist/common/scaffold.d -
source/dentist/dazzler.d -
source/dentist/package.d -
source/dentist/util/algorithm.d -
source/dentist/util/containers.d -
source/dentist/util/fasta.d -
source/dentist/util/graphalgo.d -
source/dentist/util/log.d -
source/dentist/util/math.d -
source/dentist/util/process.d -
source/dentist/util/range.d -
source/dentist/util/region.d -
source/dentist/util/saturationmath.d -
source/dentist/util/string.d -
source/dentist/util/tempfile.d