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ChangeLog
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======================================================================
Originator: Bill Sacks
Date: 3-15-2020
Tag: cime5.8.17
Answer Changes: None
Tests: scripts_regression_tests, aux_clm
Dependencies: none
Brief Summary:
- Separate mct and nuopc data, xcpl and stub components
- Update pio2
- Documentation: provide a version dropdown menu and change theme
- Add ne5pg2_ne5pg2_mg37 grid
- Fix some issues
User interface changes: None
PR summary: git log --oneline --first-parent [previous_tag]..master
4f1880756 Merge pull request #3439 from billsacks/versioned_docs3
38c2b9f3c Merge pull request #3441 from jedwards4b/thunder_port
5d9ff806a Merge pull request #3451 from jedwards4b/check_inputdata_fix
3444503c2 Merge pull request #3449 from ESMCI/jgfouca/improve_case_setup_clean
02a8eebaa fix default for PIO_REARRANGER
49e82c611 Merge pull request #3447 from jedwards4b/pio2_update
ada1f0901 Merge pull request #3445 from ESMCI/fischer/ne5pg2
bbba1afdb Merge pull request #3444 from alperaltuntas/datm_mesh_tol
acc2d239c Merge commit 'e5265f03a6a8e1806e1b463b00c006b365e149d4'
fadc3ee16 resolve conflicts
614b3117c Merge pull request #3440 from ESMCI/fischer/aq_scam
328e3872a Merge pull request #3392 from ESMCI/mvertens/new_component_directories3
a93ced5eb need to explicitly state compiler used
bf09ad8e8 minor change to get FFLAGS
20856d803 Merge pull request #3431 from jedwards4b/complete_cprnc_fix
7fd3daebc Merge pull request #3430 from ESMCI/jgfouca/sharedlib_bld_serialization
e75142fae Merge pull request #3424 from ESMCI/cprnc_build_machine
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/config_pio.xml
M config/e3sm/config_files.xml
M config/ufs/config_files.xml
M config/ufs/config_inputdata.xml
M config/ufs/machines/config_batch.xml
M config/ufs/machines/config_compilers.xml
M config/ufs/machines/config_machines.xml
M config/ufs/machines/config_workflow.xml
M config/ufs/machines/template.chgres.run
M config/ufs/machines/template.gfs_post.run
M doc/README
D doc/source/_static
A doc/source/_static/pop_ver.js
A doc/source/_templates/footer.html
A doc/source/_templates/layout.html
M doc/source/conf.py
M scripts/lib/CIME/SystemTests/pre.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/buildlib.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/case/preview_namelists.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/test_scheduler.py
M scripts/tests/CMakeLists.txt
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.cprnc
D src/components/data_comps/datm/doc/bookinfo.xml
D src/components/data_comps/datm/doc/datacomps.xml
D src/components/data_comps/datm/doc/intro.xml
D src/components/data_comps/datm/doc/rundocbook.csh
D src/components/data_comps/datm/doc/streams.xml
D src/components/data_comps/datm/doc/ug.xml
D src/components/data_comps/docn/tools/pop_som_frc/SOM.pdf
D src/components/data_comps/dwav/bld/README
R100 src/components/data_comps/datm/cime_config/buildlib src/components/data_comps_mct/datm/cime_config/buildlib
R100 src/components/data_comps/datm/cime_config/buildnml src/components/data_comps_mct/datm/cime_config/buildnml
R100 src/components/data_comps/datm/cime_config/config_archive.xml src/components/data_comps_mct/datm/cime_config/config_archive.xml
R100 src/components/data_comps/datm/cime_config/config_component.xml src/components/data_comps_mct/datm/cime_config/config_component.xml
R100 src/components/data_comps/datm/cime_config/namelist_definition_datm.xml src/components/data_comps_mct/datm/cime_config/namelist_definition_datm.xml
R100 src/components/data_comps/datm/cime_config/user_nl_datm src/components/data_comps_mct/datm/cime_config/user_nl_datm
R100 src/components/data_comps/datm/mct/atm_comp_mct.F90 src/components/data_comps_mct/datm/src/atm_comp_mct.F90
R100 src/components/data_comps/datm/mct/datm_comp_mod.F90 src/components/data_comps_mct/datm/src/datm_comp_mod.F90
R100 src/components/data_comps/datm/mct/datm_shr_mod.F90 src/components/data_comps_mct/datm/src/datm_shr_mod.F90
R100 src/components/data_comps/desp/cime_config/buildlib src/components/data_comps_mct/desp/cime_config/buildlib
R099 src/components/data_comps/desp/cime_config/buildnml src/components/data_comps_mct/desp/cime_config/buildnml
R100 src/components/data_comps/desp/cime_config/config_component.xml src/components/data_comps_mct/desp/cime_config/config_component.xml
R100 src/components/data_comps/desp/cime_config/namelist_definition_desp.xml src/components/data_comps_mct/desp/cime_config/namelist_definition_desp.xml
R100 src/components/data_comps/desp/cime_config/user_nl_desp src/components/data_comps_mct/desp/cime_config/user_nl_desp
R100 src/components/data_comps/desp/desp_comp_mod.F90 src/components/data_comps_mct/desp/desp_comp_mod.F90
R100 src/components/data_comps/desp/esp_utils.F90 src/components/data_comps_mct/desp/esp_utils.F90
R100 src/components/data_comps/desp/mct/esp_comp_mct.F90 src/components/data_comps_mct/desp/src/esp_comp_mct.F90
R100 src/components/data_comps/dice/cime_config/buildlib src/components/data_comps_mct/dice/cime_config/buildlib
R100 src/components/data_comps/dice/cime_config/buildnml src/components/data_comps_mct/dice/cime_config/buildnml
R100 src/components/data_comps/dice/cime_config/config_archive.xml src/components/data_comps_mct/dice/cime_config/config_archive.xml
R100 src/components/data_comps/dice/cime_config/config_component.xml src/components/data_comps_mct/dice/cime_config/config_component.xml
R100 src/components/data_comps/dice/cime_config/namelist_definition_dice.xml src/components/data_comps_mct/dice/cime_config/namelist_definition_dice.xml
R100 src/components/data_comps/dice/cime_config/user_nl_dice src/components/data_comps_mct/dice/cime_config/user_nl_dice
R100 src/components/data_comps/dice/mct/dice_comp_mod.F90 src/components/data_comps_mct/dice/src/dice_comp_mod.F90
R100 src/components/data_comps/dice/mct/dice_flux_atmice_mod.F90 src/components/data_comps_mct/dice/src/dice_flux_atmice_mod.F90
R100 src/components/data_comps/dice/mct/dice_shr_mod.F90 src/components/data_comps_mct/dice/src/dice_shr_mod.F90
R100 src/components/data_comps/dice/mct/ice_comp_mct.F90 src/components/data_comps_mct/dice/src/ice_comp_mct.F90
R100 src/components/data_comps/dlnd/cime_config/buildlib src/components/data_comps_mct/dlnd/cime_config/buildlib
R100 src/components/data_comps/dlnd/cime_config/buildnml src/components/data_comps_mct/dlnd/cime_config/buildnml
R100 src/components/data_comps/dlnd/cime_config/config_archive.xml src/components/data_comps_mct/dlnd/cime_config/config_archive.xml
R100 src/components/data_comps/dlnd/cime_config/config_component.xml src/components/data_comps_mct/dlnd/cime_config/config_component.xml
R100 src/components/data_comps/dlnd/cime_config/namelist_definition_dlnd.xml src/components/data_comps_mct/dlnd/cime_config/namelist_definition_dlnd.xml
R100 src/components/data_comps/dlnd/cime_config/user_nl_dlnd src/components/data_comps_mct/dlnd/cime_config/user_nl_dlnd
R100 src/components/data_comps/dlnd/mct/dlnd_comp_mod.F90 src/components/data_comps_mct/dlnd/src/dlnd_comp_mod.F90
R100 src/components/data_comps/dlnd/mct/dlnd_shr_mod.F90 src/components/data_comps_mct/dlnd/src/dlnd_shr_mod.F90
R100 src/components/data_comps/dlnd/mct/lnd_comp_mct.F90 src/components/data_comps_mct/dlnd/src/lnd_comp_mct.F90
R100 src/components/data_comps/docn/cime_config/buildlib src/components/data_comps_mct/docn/cime_config/buildlib
R100 src/components/data_comps/docn/cime_config/buildnml src/components/data_comps_mct/docn/cime_config/buildnml
R100 src/components/data_comps/docn/cime_config/config_archive.xml src/components/data_comps_mct/docn/cime_config/config_archive.xml
R100 src/components/data_comps/docn/cime_config/config_component.xml src/components/data_comps_mct/docn/cime_config/config_component.xml
R100 src/components/data_comps/docn/cime_config/namelist_definition_docn.xml src/components/data_comps_mct/docn/cime_config/namelist_definition_docn.xml
R100 src/components/data_comps/docn/cime_config/user_nl_docn src/components/data_comps_mct/docn/cime_config/user_nl_docn
R099 src/components/data_comps/docn/mct/docn_comp_mod.F90 src/components/data_comps_mct/docn/src/docn_comp_mod.F90
R100 src/components/data_comps/docn/mct/docn_shr_mod.F90 src/components/data_comps_mct/docn/src/docn_shr_mod.F90
R100 src/components/data_comps/docn/mct/ocn_comp_mct.F90 src/components/data_comps_mct/docn/src/ocn_comp_mct.F90
R100 src/components/data_comps/docn/tools/pop_som_frc/README src/components/data_comps_mct/docn/tools/pop_som_frc/README
R100 src/components/data_comps/docn/tools/pop_som_frc/SOM.doc src/components/data_comps_mct/docn/tools/pop_som_frc/SOM.doc
R100 src/components/data_comps/datm/doc/SOM.pdf src/components/data_comps_mct/docn/tools/pop_som_frc/SOM.pdf
R100 src/components/data_comps/docn/tools/pop_som_frc/pop_frc.csh src/components/data_comps_mct/docn/tools/pop_som_frc/pop_frc.csh
R100 src/components/data_comps/docn/tools/pop_som_frc/pop_frc_mlann.ncl src/components/data_comps_mct/docn/tools/pop_som_frc/pop_frc_mlann.ncl
R100 src/components/data_comps/docn/tools/pop_som_frc/pop_frc_mlt.ncl src/components/data_comps_mct/docn/tools/pop_som_frc/pop_frc_mlt.ncl
R100 src/components/data_comps/docn/tools/pop_som_frc/pop_interp.ncl src/components/data_comps_mct/docn/tools/pop_som_frc/pop_interp.ncl
R100 src/components/data_comps/docn/tools/pop_som_frc/read_from_mss.csh src/components/data_comps_mct/docn/tools/pop_som_frc/read_from_mss.csh
R100 src/components/data_comps/docn/tools/pop_som_frc/read_from_mss_month.csh src/components/data_comps_mct/docn/tools/pop_som_frc/read_from_mss_month.csh
R100 src/components/data_comps/drof/cime_config/buildlib src/components/data_comps_mct/drof/cime_config/buildlib
R100 src/components/data_comps/drof/cime_config/buildnml src/components/data_comps_mct/drof/cime_config/buildnml
R100 src/components/data_comps/drof/cime_config/config_archive.xml src/components/data_comps_mct/drof/cime_config/config_archive.xml
R100 src/components/data_comps/drof/cime_config/config_component.xml src/components/data_comps_mct/drof/cime_config/config_component.xml
R100 src/components/data_comps/drof/cime_config/namelist_definition_drof.xml src/components/data_comps_mct/drof/cime_config/namelist_definition_drof.xml
R100 src/components/data_comps/drof/cime_config/user_nl_drof src/components/data_comps_mct/drof/cime_config/user_nl_drof
R100 src/components/data_comps/drof/mct/drof_comp_mod.F90 src/components/data_comps_mct/drof/src/drof_comp_mod.F90
R100 src/components/data_comps/drof/mct/drof_shr_mod.F90 src/components/data_comps_mct/drof/src/drof_shr_mod.F90
R100 src/components/data_comps/drof/mct/rof_comp_mct.F90 src/components/data_comps_mct/drof/src/rof_comp_mct.F90
R100 src/components/data_comps/dwav/README src/components/data_comps_mct/dwav/README
R100 src/components/data_comps/dwav/cime_config/buildlib src/components/data_comps_mct/dwav/cime_config/buildlib
R100 src/components/data_comps/dwav/cime_config/buildnml src/components/data_comps_mct/dwav/cime_config/buildnml
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M src/externals/pio2/src/clib/pio_lists.c
M src/externals/pio2/src/clib/pio_msg.c
M src/externals/pio2/src/clib/pio_nc.c
M src/externals/pio2/src/clib/pio_rearrange.c
M src/externals/pio2/src/clib/pioc.c
M src/externals/pio2/src/clib/pioc_support.c
M src/externals/pio2/src/flib/Makefile.am
M src/externals/pio2/src/gptl/Makefile.am
M src/externals/pio2/src/ncint/ncint_pio.c
M src/externals/pio2/src/ncint/ncintdispatch.c
M src/externals/pio2/tests/cunit/CMakeLists.txt
M src/externals/pio2/tests/cunit/Makefile.am
M src/externals/pio2/tests/cunit/run_tests.sh
A src/externals/pio2/tests/cunit/test_async_1d.c
M src/externals/pio2/tests/cunit/test_darray.c
M src/externals/pio2/tests/cunit/test_spmd.c
M src/externals/pio2/tests/fncint/Makefile.am
M src/externals/pio2/tests/ncint/Makefile.am
A src/externals/pio2/tests/ncint/pio_err_macros.h
A src/externals/pio2/tests/ncint/run_perf.sh
M src/externals/pio2/tests/ncint/run_tests.sh
A src/externals/pio2/tests/ncint/tst_async_multi.c
A src/externals/pio2/tests/ncint/tst_ncint_async_perf.c
A src/externals/pio2/tests/ncint/tst_ncint_perf.c
A src/externals/pio2/tests/ncint/tst_pio_async.c
M src/externals/pio2/tests/ncint/tst_pio_udf.c
M src/externals/pio2/tests/unit/Makefile.am
M src/share/util/shr_infnan_mod.F90.in
M tools/cprnc/CMakeLists.txt
======================================================================
======================================================================
Originator: Chris Fischer
Date: 2-27-2020
Tag: cime5.8.16
Answer Changes: None
tests: scripts_regression_tests, aux_cam using fv3, various hand tests.
Dependencies:
Brief Summary:
- Add SE grids for CAM.
- Improved cprnc build process.
- FV3 port to CAM.
- Fix izumi submit.
- maint-5.6 branch merge(2020-02-20).
- Fix the -n parameter to mpirun in chgres workflow template.
- Initial port of CIME to Hera for the UFS MR Weather App.
- Add rpath for netcdf.
- Update laramie modules.
- Fix typo.
- Fix pylint issue.
- Add ic_filepath to config_inputdata.
- Change homebrew to macos.
- Non-netcdf files should not be compared with cprnc.
- Fix an issue in downloading inputdata.
- Update cheyenne build.
- More updates of macros.
- Update macros.
- Strictly ufs updates.
- Fix for post-processing to work with netcdf files.
- Fix auto-triage.
- Add D0 to all namelist values added in PR 3231 and 3251.
- Revert "Update nuopc esmf".
- More fixes for UFS release.
- Put MAX_MPITASKS_PER_NODE back to config_workflow.xml.
- Fix chgres issue on cheyenne.
- Update for UFS model.
- Allow writing T-forcing cplhist files even when running with SGLC.
- Update nuopc esmf.
- Fix misspelling in comment.
- Fix issue with resubmit on systems that use ssh.
- Move orbital updates to nuopc caps and update nuopc dmodels.
- Latest developments from the CIME_MODEL=ufs project.
- Fix issue when input_ic_root is None.
- Fix misleading output casestatus.
- More work related with UFS.
- Update description for FORCE_BUILD_SMP.
- Revert "update esmf and netcdf on cheyenne".
- Remove redundant logic in _get_extension.
- Pop hist dd fix.
- Homebrew build fix.
- Cheyenne machine updates.
- Correction in get_model().
- Update ufs config_files.
- Implement automatic test traiging in e3sm test infrastructure.
- Rename fv3gfs to ufsatm.
- Extend archiving support to accept a regex pattern as well as a cesm style file extension.
- Updates needed to get aux_clm tests working with CMEPS.
- Add trouble shooting doc.
- Updates input directory for UFS application.
- Changes to build fv3gfs standalone using cime.
- Support new inputdata for ufs model.
- Fixed Empty .cesm_proj file results in a crash.
- Improve scripts_regression_tests test cleanup.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
b2e292597 Merge pull request #3420 from ESMCI/fischer/segrids
5f75c600f Merge pull request #3400 from ESMCI/wpcoomb/improve_cprnc_build_process
f6395d42d Merge pull request #3415 from jtruesdal/fv3port
894562c87 Merge pull request #3413 from jedwards4b/fix_izumi_submit
1d406ebfa Merge pull request #3409 from ESMCI/fischer/m_maint5.6
a1ee2a564 Merge pull request #3405 from ESMCI/rsdunlapiv/chgres_mpirun_fix
d7d30df71 Merge pull request #3407 from ESMCI/rsdunlapiv/heraport2
3b42be3f0 Merge pull request #3406 from jedwards4b/mac_build_fix
1f64cbe2a Merge pull request #3402 from ESMCI/laramie_update
2a8bbd8e5 fix typo
7fe3af99b fix pylint issue
8884e2acf Merge pull request #3398 from jedwards4b/ufs_autodownload
39ce78718 change homebrew to macos
3835a137c Merge pull request #3397 from jedwards4b/dont_compare_nonnetcdf_hists
3399dd0be Merge pull request #3395 from jedwards4b/fix_issue_in_download
ae6b1a267 update cheyenne build for compatibility
e11de4814 more updates for macos
0c262b64b updates for macos
7339b0b66 strictly ufs updates
5b59975cf fix for post-processing to work with netcdf files
b5c3ca048 Merge pull request #3388 from ESMCI/jgfouca/fix_auto_triage
4c26f56e6 Merge pull request #3383 from cacraigucar/add_namelist_double
e8e9f655a Merge pull request #3386 from ESMCI/revert-3377-update_nuopc_esmf
e3b71c2f3 Merge pull request #3384 from ESMCI/uturuncoglu/ufs_release
5fe1b20e2 put MAX_MPITASKS_PER_NODE back to config_workflow.xml
846d089d8 fix chgres issue on cheyenne
f09afb134 Merge pull request #3379 from ESMCI/ufs_release
ce075935d Merge pull request #3358 from billsacks/t_forcing_cplhist_with_sglc_master
6cfcb072d Merge pull request #3377 from jedwards4b/update_nuopc_esmf
0d7fc13ab Fix misspelling in comment
307d4bb4a Merge pull request #3375 from jedwards4b/ssh_resubmit_fix
4de404425 Merge pull request #3373 from ESMCI/mvertens/update_nuopc_dmodels
d3624d963 Merge pull request #3371 from ESMCI/ufs_release
44673e0b8 fix issue when input_ic_root is None
8b8b1df5a Merge pull request #3354 from ESMCI/wpcoomb/fix_misleading_output_casestatus
bd4525df7 Merge pull request #3353 from ESMCI/ufs_release
e6ddef63f Merge pull request #3351 from ESMCI/jgfouca/update_force_build_smp_desc
5c32f2315 Merge pull request #3350 from ESMCI/revert-3343-cheyenne_machine_updates
27fd20a50 Merge pull request #3348 from billsacks/cleanup_extension_dd_match
d261fea15 Merge pull request #3346 from jedwards4b/pop_hist_dd_fix
207d1ab7d Merge pull request #3345 from jedwards4b/homebrew_build_fix
27b6d3405 Merge pull request #3343 from jedwards4b/cheyenne_machine_updates
b373a0240 correction in get_model()
2fd32ebef update ufs config_files
6d5b5ba84 Merge pull request #3340 from ESMCI/jgfouca/cime_auto_triage
5a35958e2 Merge pull request #3337 from jedwards4b/rename_fv3gfs_ufsatm
047f4ffbf Merge pull request #3326 from jedwards4b/archive_extensions
2f3876d4d Merge pull request #3335 from ESMCI/mvertens/updates_for_nuopc_regional
33ad6e314 Merge pull request #3332 from billsacks/doc_troubleshooting
00cfb7ed9 Merge pull request #3327 from jedwards4b/ufs_release_3
d13f34f15 Merge pull request #3322 from jedwards4b/fv3gfs_cime_build2
93931a0ec Merge pull request #3323 from jedwards4b/ufs_inputdata
c00ce8ff4 Merge pull request #3319 from ESMCI/wpcoomb/fix_empty_.cesm_proj_crash
2a7d36454 Merge pull request #3317 from ESMCI/jgfouca/better_regr_test_cleanup
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_archive.xml
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/cesm/config_grids_common.xml
M config/cesm/config_grids_mct.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/config_workflow.xml
M config/cesm/machines/cylc_suite.rc.template
M config/ufs/config_files.xml
M config/ufs/config_grids.xml
D config/ufs/config_grids_common.xml
D config/ufs/config_grids_mct.xml
D config/ufs/config_grids_nuopc.xml
M config/ufs/config_inputdata.xml
M config/ufs/machines/config_batch.xml
M config/ufs/machines/config_compilers.xml
M config/ufs/machines/config_machines.xml
M config/ufs/machines/config_workflow.xml
A config/ufs/machines/template.chgres.run
A config/ufs/machines/template.gfs_post.run
M config/xml_schemas/config_compilers_v2.xsd
M config/xml_schemas/config_inputdata.xsd
M config/xml_schemas/config_workflow.xsd
M config/xml_schemas/testlist.xsd
M doc/source/users_guide/troubleshooting.rst
M scripts/Tools/Makefile
M scripts/Tools/archive_metadata
M scripts/Tools/bless_test_results
M scripts/Tools/component_compare_copy
M scripts/Tools/jenkins_generic_job
M scripts/Tools/jenkins_script
M scripts/Tools/wait_for_tests
M scripts/create_test
M scripts/lib/CIME/Servers/ftp.py
M scripts/lib/CIME/Servers/wget.py
M scripts/lib/CIME/SystemTests/mvk.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/SystemTests/tsc.py
M scripts/lib/CIME/XML/archive.py
M scripts/lib/CIME/XML/archive_base.py
M scripts/lib/CIME/XML/env_archive.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_workflow.py
M scripts/lib/CIME/XML/inputdata.py
M scripts/lib/CIME/XML/testlist.py
M scripts/lib/CIME/bless_test_results.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/case/preview_namelists.py
M scripts/lib/CIME/code_checker.py
M scripts/lib/CIME/get_timing.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/nmlgen.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/utils.py
M scripts/lib/CIME/wait_for_tests.py
M scripts/lib/jenkins_generic_job.py
M scripts/query_config
M scripts/tests/scripts_regression_tests.py
A src/build_scripts/buildlib.cprnc
M src/components/data_comps/datm/cime_config/config_component.xml
M src/components/data_comps/datm/cime_config/namelist_definition_datm.xml
M src/components/data_comps/datm/nuopc/atm_comp_nuopc.F90
M src/components/data_comps/datm/nuopc/datm_comp_mod.F90
D src/components/data_comps/datm/nuopc/datm_shr_mod.F90
M src/components/data_comps/dice/nuopc/dice_comp_mod.F90
M src/components/data_comps/dice/nuopc/dice_flux_atmice_mod.F90
D src/components/data_comps/dice/nuopc/dice_shr_mod.F90
M src/components/data_comps/dice/nuopc/ice_comp_nuopc.F90
M src/components/data_comps/dlnd/nuopc/dlnd_comp_mod.F90
D src/components/data_comps/dlnd/nuopc/dlnd_shr_mod.F90
M src/components/data_comps/dlnd/nuopc/lnd_comp_nuopc.F90
M src/components/data_comps/docn/mct/docn_comp_mod.F90
M src/components/data_comps/docn/nuopc/docn_comp_mod.F90
D src/components/data_comps/docn/nuopc/docn_shr_mod.F90
M src/components/data_comps/docn/nuopc/ocn_comp_nuopc.F90
M src/components/data_comps/drof/cime_config/config_component.xml
M src/components/data_comps/drof/cime_config/namelist_definition_drof.xml
M src/components/data_comps/drof/nuopc/drof_comp_mod.F90
D src/components/data_comps/drof/nuopc/drof_shr_mod.F90
M src/components/data_comps/drof/nuopc/rof_comp_nuopc.F90
A src/components/data_comps/dshr_nuopc/dshr_dfield_mod.F90
A src/components/data_comps/dshr_nuopc/dshr_fldlist_mod.F90
M src/components/data_comps/dshr_nuopc/dshr_methods_mod.F90
M src/components/data_comps/dshr_nuopc/dshr_nuopc_mod.F90
M src/components/data_comps/dwav/nuopc/dwav_comp_mod.F90
D src/components/data_comps/dwav/nuopc/dwav_shr_mod.F90
M src/components/data_comps/dwav/nuopc/wav_comp_nuopc.F90
M src/components/xcpl_comps/xatm/nuopc/atm_comp_nuopc.F90
M src/components/xcpl_comps/xglc/nuopc/glc_comp_nuopc.F90
M src/components/xcpl_comps/xice/nuopc/ice_comp_nuopc.F90
M src/components/xcpl_comps/xlnd/nuopc/lnd_comp_nuopc.F90
M src/components/xcpl_comps/xocn/nuopc/ocn_comp_nuopc.F90
M src/components/xcpl_comps/xrof/nuopc/rof_comp_nuopc.F90
M src/components/xcpl_comps/xwav/nuopc/wav_comp_nuopc.F90
M src/drivers/mct/cime_config/buildexe
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/prep_glc_mod.F90
M src/drivers/mct/main/seq_flux_mct.F90
M src/share/timing/perf_mod.F90
M tools/cprnc/CMakeLists.txt
======================================================================
======================================================================
Originator: Bill Sacks
Date: 11-26-2019
Tag: cime5.8.15
Answer Changes: None
Tests: scripts_regression_tests, aux_clm
Dependencies: none
Brief Summary:
- Modifications for UFS Global Mid-range Weather application
- Changes for nuopc mediator updates
- Fix clean build for CLM
- Fix dlnd for gnu
- Documentation updates for building pFUnit
User interface changes: none
PR summary: git log --oneline --first-parent [previous_tag]..master
67a54f588 Merge pull request #3315 from billsacks/pass_comp_lnd_to_build
8884a9e2f config_compilers had a duplicate entry for athena
4e556447e Merge pull request #3311 from billsacks/doc_pfunit_build
3c00449df Merge pull request #3312 from ESMCI/mvertens/update_nuopc_externals
7365a820b Merge pull request #3309 from ESMCI/fischer/T1850G1_fix
e67646129 Merge pull request #3306 from ESMCI/ufs-release
1c04f4453 Update location for obtaining pFUnit (#3300)
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M config/cesm/machines/config_compilers.xml
A config/ufs/config_archive.xml
A config/ufs/config_files.xml
A config/ufs/config_grids.xml
A config/ufs/config_grids_common.xml
A config/ufs/config_grids_mct.xml
A config/ufs/config_grids_nuopc.xml
A config/ufs/config_inputdata.xml
A config/ufs/machines/Depends.cray
A config/ufs/machines/Depends.gnu
A config/ufs/machines/Depends.intel
A config/ufs/machines/README
A config/ufs/machines/config_batch.xml
A config/ufs/machines/config_compilers.xml
A config/ufs/machines/config_machines.xml
A config/ufs/machines/config_pio.xml
A config/ufs/machines/config_workflow.xml
A config/ufs/machines/cylc_suite.rc.template
A config/ufs/machines/template.case.run
A config/ufs/machines/template.case.test
A config/ufs/machines/template.st_archive
A config/ufs/machines/userdefined_laptop_template/README.md
A config/ufs/machines/userdefined_laptop_template/config_compilers.xml
A config/ufs/machines/userdefined_laptop_template/config_machines.xml
A config/ufs/machines/userdefined_laptop_template/config_pes.xml
M doc/source/users_guide/unit_testing.rst
M scripts/Tools/Makefile
M scripts/create_test
M scripts/lib/CIME/build.py
M scripts/lib/CIME/utils.py
M scripts/tests/CTestConfig.cmake
M src/components/data_comps/dlnd/mct/dlnd_comp_mod.F90
M src/share/nuopc/seq_drydep_mod.F90
M src/share/nuopc/shr_carma_mod.F90
M src/share/nuopc/shr_fire_emis_mod.F90
M src/share/nuopc/shr_megan_mod.F90
M src/share/nuopc/shr_ndep_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 11-11-2019
Tag: cime5.8.14
Answer Changes: None, (except for X compsets with nuopc
Tests: scripts_regression_tests, ERIO.f09_g16.X.cheyenne_intel
Dependencies:
Brief Summary:
- Revert "initialize albdif and albdir in seq_flux_mct"
- Initialize albdif and albdir in seq_flux_mct.
- Clean up env_batch.
- Test too short.
- set mpilib for custom test.
- Shorten the cime developer tests.
- Update time of day string in ERI test.
- Shr code cleanup.
- Update for compatibility with latest CMEPS.
- Omit broken netcdf4 on cheyenne with mpt.
- Exclude .ref1 and .ref2 from TestStatus files and move get_test_status_files to a common place.
- Fix issue with e3sm field.
- Minor fix to e3sm_cime_mgmt to properly handle submodules.
- Refactor how run_cmd handles strings.
- ACME merge 2019-10-25.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
cad8477bb Merge pull request #3297 from ESMCI/revert-3296-master_seq_flux_init
5f7bfb6a1 Merge pull request #3296 from jedwards4b/master_seq_flux_init
96455e0d6 Merge pull request #3292 from ESMCI/jgfouca/cleanup_env_batch
73dddb262 test too short
ff5a4c07c set mpilib for custom test
de2f7c3bb Merge pull request #3289 from jedwards4b/shorten_cime_developer
62a77d1d5 Merge pull request #3288 from ESMCI/fischer/eri_test
0bd9a353e Merge pull request #3285 from jedwards4b/shr_code_cleanup
1529bac14 Merge pull request #3283 from ESMCI/nems_integration_fixed2
edb013cb7 Merge pull request #3284 from jedwards4b/ERIO_on_cheyenne
cafc94139 Merge pull request #3282 from jedwards4b/fix_get_test_status_files
0945a4760 Merge pull request #3277 from jedwards4b/demand_better
db4d8df17 Minor fix to e3sm_cime_mgmt to properly handle submodules
4d6798451 Merge pull request #3273 from ESMCI/jgfouca/run_cmd_str_refactor
bb9fc0a99 Merge pull request #3272 from ESMCI/jgfouca/branch-for-acme-split-2019-10-25
Modified files: git diff --name-status [previous_tag]
M config/cesm/machines/config_machines.xml
M config/e3sm/allactive/config_pesall.xml
M config/e3sm/config_grids.xml
M config/e3sm/machines/config_batch.xml
M config/e3sm/machines/config_compilers.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/tests.py
M scripts/create_test
M scripts/lib/CIME/Servers/wget.py
M scripts/lib/CIME/SystemTests/eri.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/bless_test_results.py
M scripts/lib/CIME/buildlib.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/compare_test_results.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/test_utils.py
M scripts/lib/CIME/utils.py
M scripts/lib/e3sm_cime_mgmt.py
M scripts/lib/get_tests.py
M scripts/tests/scripts_regression_tests.py
M src/components/data_comps/dlnd/mct/dlnd_comp_mod.F90
M src/components/data_comps/docn/nuopc/docn_comp_mod.F90
M src/components/data_comps/docn/nuopc/docn_shr_mod.F90
M src/components/xcpl_comps/xlnd/nuopc/lnd_comp_nuopc.F90
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/prep_aoflux_mod.F90
M src/drivers/mct/main/prep_rof_mod.F90
M src/drivers/mct/shr/seq_flds_mod.F90
M src/drivers/mct/shr/seq_timemgr_mod.F90
M src/share/nuopc/glc_elevclass_mod.F90
M src/share/nuopc/seq_drydep_mod.F90
M src/share/streams/shr_strdata_mod.F90
M src/share/util/mct_mod.F90
M src/share/util/shr_const_mod.F90
M src/share/util/shr_flux_mod.F90
M src/share/util/shr_mct_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 10-24-2019
Tag: cime5.8.13
Answer Changes: None
Tests: scripts_regeression_tests
Dependencies:
Brief Summary:
- Add a raw xml option to the query_config interface.
- Add --only-job option to case.submit.
User interface changes:
- Add --xml to query_config.
- Add option --only-job to case.submit.
- Fix an issue with Lockedfile error when case.submit is used with the --no-batch flag.
- Change globally uniform SST mode from AQP11 to AQPCONST.
PR summary: git log --oneline --first-parent [previous_tag]..master
f22ebdafa Merge pull request #3268 from jedwards4b/add_xml_to_query_config
ab4d53999 Merge pull request #3267 from jedwards4b/no_workflow
4cd12246f Merge pull request #3265 from jedwards4b/fix_batch_lock_issue
a45130996 Merge pull request #3257 from ESMCI/whannah/add-AQPCONST-mode
Modified files: git diff --name-status [previous_tag]
M scripts/Tools/case.submit
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/utils.py
M scripts/query_config
M src/components/data_comps/docn/cime_config/buildnml
M src/components/data_comps/docn/cime_config/config_component.xml
M src/components/data_comps/docn/cime_config/namelist_definition_docn.xml
M src/components/data_comps/docn/mct/docn_comp_mod.F90
M src/components/data_comps/docn/mct/docn_shr_mod.F90
M src/drivers/mct/cime_config/config_component.xml
M src/share/util/shr_scam_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 10-15-2019
Tag: cime5.8.12
Answer Changes: None
Tests: ERS.T5_T5_mg37.QPC4, scripts_regression_tests
Dependencies:
Brief Summary:
- Add missing domain files for T5_T5_mg37 grid.
- Merge maint-5.6 to master 2019-11-10.
- Updates for cam testing updates.
- Fix nuopc esmf paths.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
7f1d48fe9 Merge pull request #3263 from ESMCI/fischer/T5_grid_fix
3468404c1 Merge pull request #3260 from ESMCI/fischer/maint-5.6_merge
7070d8a5c Merge pull request #3256 from ESMCI/fischer/cam_testing
4a9b008f2 fix nuopc esmf paths
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/config_workflow.xml
M config/e3sm/machines/config_workflow.xml
M config/xml_schemas/config_workflow.xsd
M scripts/create_newcase
M scripts/lib/CIME/XML/workflow.py
M scripts/lib/CIME/case/case.py
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/seq_flux_mct.F90
M src/share/util/shr_flux_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 10-01-2019
Tag: cime5.8.11
Answer Changes: None
Tests: scripts_regression_tests, Hand tested SMS_D_Vnuopc.f09_g17.X.cheyenne_intel
Dependencies:
Brief Summary:
- Correct the way esmf is built to avoid library mismatch.
- Update gnu compiler on cheyenne, bit for bit.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
693383167 Merge pull request #3252 from jedwards4b/nuopc_esmf_build_correction
fcc629127 Merge pull request #3253 from ESMCI/fischer/gnu_fix
Modified files: git diff --name-status [previous_tag]
M config/cesm/machines/config_machines.xml
M scripts/Tools/Makefile
======================================================================
======================================================================
Originator: Chris Fischer
Date: 9-26-2019
Tag: cime5.8.10
Answer Changes: None
Tests: scripts_regression_tests, tested with nuopc
Dependencies:
Brief Summary:
- Don't call mpi_bcast on null communicator.
- Fix nag compiler flags.
- Fix issue with workflow prior to run on master.
- Merge maint-5.6.
- Update esmf paths on cheyenne for nuopc.
- Fix issue in scripts_regression_tests.py.
- Fix issue 3232
- Update DROF(JRA) to MOM6 mapping file.
- acme split 2019-09-05 merge.
- Clean up some issues in scripts_regression_tests.py.
- Add /cluster/torque/bin to path on izumi.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
809bcb3b8 Merge pull request #3248 from jedwards4b/mct_null_comm_fix
2a2b9ecfe Merge pull request #3244 from ESMCI/fischer/cam_nag_fix
5f4f1c6da Merge pull request #3243 from jedwards4b/workflow_before_run_master
23409d7e9 Merge pull request #3241 from ESMCI/fischer/maint-5.6_09182019
47b630012 Merge pull request #3239 from jedwards4b/cheyenne_esmf_update
00d664666 fix issue in scripts_regression_tests.py
474dc5fc0 fix issue 3232
209b1e19b Merge pull request #3233 from alperaltuntas/update_TL319_t061
35bc87f4f Merge pull request #3230 from ESMCI/jgfouca/branch-for-acme-split-2019-09-05
d2f7157b8 Merge pull request #3227 from jedwards4b/srt_update
8bffca6d3 Merge pull request #3221 from billsacks/izumi_add_to_path
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_archive.xml
M config/cesm/config_grids_common.xml
M config/cesm/machines/Depends.nag
M config/cesm/machines/config_machines.xml
M config/e3sm/allactive/config_compsets.xml
M config/e3sm/allactive/config_pesall.xml
M config/e3sm/machines/config_batch.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/machines/config_pio.xml
M config/e3sm/tests.py
M config/xml_schemas/config_machines.xsd
M scripts/Tools/Makefile
M scripts/Tools/archive_metadata
M scripts/Tools/preview_run
M scripts/climate_reproducibility/README.md
M scripts/lib/CIME/SystemTests/mvk.py
M scripts/lib/CIME/SystemTests/pgn.py
M scripts/lib/CIME/SystemTests/tsc.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/machines.py
A scripts/lib/CIME/XML/stream.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/nmlgen.py
M scripts/lib/CIME/utils.py
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.pio
M src/components/data_comps/datm/cime_config/buildnml
M src/components/data_comps/dice/cime_config/buildnml
M src/components/data_comps/dlnd/cime_config/buildnml
M src/components/data_comps/docn/cime_config/buildnml
M src/components/data_comps/docn/cime_config/config_component.xml
M src/components/data_comps/docn/cime_config/namelist_definition_docn.xml
M src/components/data_comps/docn/mct/docn_comp_mod.F90
M src/components/data_comps/docn/mct/docn_shr_mod.F90
M src/components/data_comps/drof/cime_config/buildnml
M src/components/data_comps/dwav/cime_config/buildnml
M src/drivers/mct/cime_config/buildnml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/config_component_e3sm.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/cime_config/testdefs/testlist_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/seq_flux_mct.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
M src/share/streams/shr_tInterp_mod.F90
M src/share/util/shr_orb_mod.F90
M src/share/util/shr_scam_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 8-29-2019
Tag: cime5.8.9
Answer Changes: None
Tests: scripts_regression_tests --compiler nag, SMS_D_Ln9.f19_f19_mg17.QPC6.izumi_nag
Dependencies:
Brief Summary:
- Fix nag compiler for CAM.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
- 6026ca341 Merge pull request #3219 from ESMCI/fischer/nag
Modified files: git diff --name-status [previous_tag]
M config/cesm/machines/Depends.nag
======================================================================
======================================================================
Originator: Chris Fischer