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Following SIM links might be a feature request although there are some implications as AGC will traverse nested directories. One possible work around would be to have a github repo of common WDL subworkflows and for each workflow you |
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Hello, I had what is hopefully a quick question about the best way to handle large projects with multiple WDL entry points in AGC.
If we have a bunch of workflows that are importing from common WDL task files etc, is there a best practices for defining those different workflows to AGC?
My initial approach was to have a staging directory where each workflow entrypoint
WDL
would be symlinked in a directory corresponding to that workflow and in that directory haveinputs.json
andMANIFEST.yaml
files. The problem there being that it seems like AGC doesn't then follow those symlinks when doing imports for the WDL. (i.e. if my workflow WDLMyExampleWorkflow
imports a task WDL file withimport "example_tasks.wdl"
, AGC will fail due to not being able to findexample_tasks.wdl
in the staging directory.)Is there a preferred way of managing this that I'm not thinking of?
Thanks in advance!
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