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nf-core/sarek demo doesn't work due to the input validation error #587
Labels
bug
Something isn't working
Describe the Bug
The current input for the demo run doesn't work, because the current version of nf-core/sarek requires a csv file format.
For example:
Steps to Reproduce
Execute sarek workflow for the project - https://github.com/aws/amazon-genomics-cli/tree/main/examples/nf-core-project
Relevant Logs
Jan-06 14:24:27.109 [main] ERROR nextflow.Nextflow - ERROR: Validation of pipeline parameters failed!
Jan-06 14:24:27.133 [main] ERROR nextflow.Nextflow - * --input: string [s3://healthai-public-assets-us-east-1/agc-demo-data/sarek/fastq_list.tsv] does not match pattern ^\S+.csv$ (s3://healthai-public-assets-us-east-1/agc-demo-data/sarek/fastq_list.tsv)
Expected Behavior
Actual Behavior
Screenshots
Additional Context
Operating System: macOS Monterey
AGC Version: 1.6.0
Was AGC setup with a custom bucket: no
Was AGC setup with a custom VPC: no
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