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models.py
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models.py
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""" Parts of the U-Net model """
import torch
import torch.nn as nn
import torch.nn.functional as F
import math
def positionalencoding1d(d_model, length):
"""
:param d_model: dimension of the model
:param length: length of positions
:return: length*d_model position matrix
"""
if d_model % 2 != 0:
raise ValueError(
"Cannot use sin/cos positional encoding with "
"odd dim (got dim={:d})".format(d_model)
)
pe = torch.zeros(length, d_model)
position = torch.arange(0, length).unsqueeze(1)
div_term = torch.exp(
(
torch.arange(0, d_model, 2, dtype=torch.float)
* -(math.log(10000.0) / d_model)
)
)
pe[:, 0::2] = torch.sin(position.float() * div_term)
pe[:, 1::2] = torch.cos(position.float() * div_term)
return pe
def get_position_embeddings(t, device):
x = positionalencoding1d(32, 1000).to(device)
emb = x[t]
return emb
class DoubleConv(nn.Module):
"""(convolution => [BN] => ReLU) * 2"""
def __init__(self, in_channels, out_channels, mid_channels=None):
super().__init__()
if not mid_channels:
mid_channels = out_channels
self.double_conv = nn.Sequential(
nn.Conv2d(in_channels, mid_channels, kernel_size=3, padding=1, bias=False),
nn.BatchNorm2d(mid_channels),
nn.ReLU(inplace=True),
nn.Conv2d(mid_channels, out_channels, kernel_size=3, padding=1, bias=False),
nn.BatchNorm2d(out_channels),
nn.ReLU(inplace=True),
)
def forward(self, x):
return self.double_conv(x)
class Down(nn.Module):
"""Downscaling with maxpool then double conv"""
def __init__(self, in_channels, out_channels):
super().__init__()
self.maxpool_conv = nn.Sequential(
nn.MaxPool2d(2), DoubleConv(in_channels, out_channels)
)
def forward(self, x):
return self.maxpool_conv(x)
class Up(nn.Module):
"""Upscaling then double conv"""
def __init__(self, in_channels, out_channels, bilinear=True):
super().__init__()
# if bilinear, use the normal convolutions to reduce the number of channels
if bilinear:
self.up = nn.Upsample(scale_factor=2, mode="bilinear", align_corners=True)
self.conv = DoubleConv(in_channels, out_channels, in_channels // 2)
else:
self.up = nn.ConvTranspose2d(
in_channels, in_channels // 2, kernel_size=2, stride=2
)
self.conv = DoubleConv(in_channels, out_channels)
def forward(self, x1, x2):
x1 = self.up(x1)
# input is CHW
diffY = x2.size()[2] - x1.size()[2]
diffX = x2.size()[3] - x1.size()[3]
x1 = F.pad(x1, [diffX // 2, diffX - diffX // 2, diffY // 2, diffY - diffY // 2])
# if you have padding issues, see
# https://github.com/HaiyongJiang/U-Net-Pytorch-Unstructured-Buggy/commit/0e854509c2cea854e247a9c615f175f76fbb2e3a
# https://github.com/xiaopeng-liao/Pytorch-UNet/commit/8ebac70e633bac59fc22bb5195e513d5832fb3bd
x = torch.cat([x2, x1], dim=1)
return self.conv(x)
class OutConv(nn.Module):
def __init__(self, in_channels, out_channels):
super(OutConv, self).__init__()
self.conv = nn.Conv2d(in_channels, out_channels, kernel_size=1)
def forward(self, x):
return self.conv(x)
class UNet(nn.Module):
def __init__(self, n_channels, n_classes, bilinear=False):
super(UNet, self).__init__()
self.n_channels = n_channels
self.n_classes = n_classes
self.bilinear = bilinear
self.inc = DoubleConv(n_channels, 64)
self.down1 = Down(64, 128)
self.down2 = Down(128, 256)
self.down3 = Down(256, 512)
factor = 2 if bilinear else 1
self.down4 = Down(512, 1024 // factor)
self.up1 = Up(1024, 512 // factor, bilinear)
self.up2 = Up(512, 256 // factor, bilinear)
self.up3 = Up(256, 128 // factor, bilinear)
self.up4 = Up(128, 64, bilinear)
self.outc = OutConv(64, n_classes)
self.class_embed = nn.Linear(10, 32)
input_size = [32, 64, 128, 256, 512, 1024, 512, 256, 128, 64]
self.linears = nn.ModuleList(
[
nn.Linear(input_size[0], input_size[i + 1])
for i in range(len(input_size) - 1)
]
)
def forward(self, x, t, y=None):
x1 = self.inc(x)
if y is not None:
y_embed = self.class_embed(y)
t = t + y_embed
t1 = self.linears[0](t)
t1 = t1.unsqueeze(-1).unsqueeze(-1)
x1 = x1 + t1
x2 = self.down1(x1)
t1 = self.linears[1](t)
t1 = t1.unsqueeze(-1).unsqueeze(-1)
x2 = x2 + t1
x3 = self.down2(x2)
t1 = self.linears[2](t)
t1 = t1.unsqueeze(-1).unsqueeze(-1)
x3 = x3 + t1
x4 = self.down3(x3)
t1 = self.linears[3](t)
t1 = t1.unsqueeze(-1).unsqueeze(-1)
x4 = x4 + t1
x5 = self.down4(x4)
t1 = self.linears[4](t)
t1 = t1.unsqueeze(-1).unsqueeze(-1)
x5 = x5 + t1
x = self.up1(x5, x4)
t1 = self.linears[5](t)
t1 = t1.unsqueeze(-1).unsqueeze(-1)
x = x + t1
x = self.up2(x, x3)
t1 = self.linears[6](t)
t1 = t1.unsqueeze(-1).unsqueeze(-1)
x = x + t1
x = self.up3(x, x2)
t1 = self.linears[7](t)
t1 = t1.unsqueeze(-1).unsqueeze(-1)
x = x + t1
x = self.up4(x, x1)
t1 = self.linears[8](t)
t1 = t1.unsqueeze(-1).unsqueeze(-1)
x = x + t1
logits = self.outc(x)
return logits
class Classifier(nn.Module):
def __init__(self):
super().__init__()
self.conv1 = nn.Conv2d(1, 12, 3)
self.conv2 = nn.Conv2d(12, 12, 3)
self.pool = nn.MaxPool2d(2, 2)
self.conv3 = nn.Conv2d(12, 32, 3)
self.conv4 = nn.Conv2d(32, 32, 3)
self.fc1 = nn.Linear(32 * 5 * 5, 120)
self.fc2 = nn.Linear(120+32, 84)
self.fc3 = nn.Linear(84, 10)
def forward(self, x, t_embed):
x = self.pool(F.relu(self.conv2(F.relu(self.conv1(x)))))
x = self.pool(F.relu(self.conv4(F.relu(self.conv3(x)))))
x = torch.flatten(x, 1) # flatten all dimensions except batch
x = F.relu(self.fc1(x))
x = torch.cat([x, t_embed], dim=1)
x = F.relu(self.fc2(x))
x = self.fc3(x)
return x
def cond_fn(x, t_embed, classifier, y=None, scale=1):
assert y is not None
with torch.enable_grad():
x_in = x.detach().requires_grad_(True)
logits = classifier(x_in, t_embed)
log_probs = F.log_softmax(logits, dim=-1)
selected = log_probs[range(len(logits)), y.view(-1)]
return torch.autograd.grad(selected.sum(), x_in)[0] * scale