diff --git a/.dockerignore b/.dockerignore index 38c15249f8..5ebc819b83 100644 --- a/.dockerignore +++ b/.dockerignore @@ -6,6 +6,7 @@ .zap .architecture .gitignore +.ipynb_checkpoints node_modules web/build web/coverage-cypress @@ -22,8 +23,14 @@ web/.yarn/* !web/.yarn/versions r .dockerignore +grib **/Dockerfile* **/junk **/scripts **/python_cache* -**.venv \ No newline at end of file +**/__pycache__ +**/*.pyc +**/*.zip +**/*.grib2 +**.venv +*/nbconvert/* \ No newline at end of file diff --git a/.github/workflows/integration.yml b/.github/workflows/integration.yml index 794d78ec9d..40b3bf2719 100644 --- a/.github/workflows/integration.yml +++ b/.github/workflows/integration.yml @@ -20,30 +20,27 @@ jobs: steps: - name: Checkout repo uses: actions/checkout@v6 + - name: Install uv + uses: astral-sh/setup-uv@v5 + with: + version: "0.9.11" - name: Cache .venv id: cache-venv uses: actions/cache@v4 with: - path: ~/work/wps/wps/api/.venv - key: ${{ runner.os }}-venv-poetry-1.8.3-${{ hashFiles('**/poetry.lock') }} - - name: Install python dependencies using poetry (api) + path: ~/work/wps/wps/backend/.venv + key: ${{ runner.os }}-venv-uv-0.9.11-${{ hashFiles('**/uv.lock') }} + - name: Install python dependencies using uv if: steps.cache-venv.outputs.cache-hit != 'true' - working-directory: ./api - run: | - poetry run python -m pip install --upgrade pip - poetry install - poetry run python -m pip install -U setuptools wheel - poetry run python -m pip install --no-build-isolation --no-cache-dir --force-reinstall gdal==$(gdal-config --version) - - name: Reinstall wps_shared - working-directory: ./api + working-directory: ./backend run: | - poetry run python -m pip install --no-deps --force-reinstall ../wps_shared + uv sync --all-extras + uv pip install setuptools + uv pip install --no-build-isolation gdal==$(gdal-config --version) - name: Lint (api/wps_shared/wps_jobs) - # We used to be able to do linting before installing gdal, but it's not possible anymore. - # We can however place it ahead of the R installs. - working-directory: ./api + working-directory: ./backend run: | - poetry run ruff check app/*.py app/**/*.py ../wps_shared/wps_shared/*.py ../wps_shared/wps_shared/**/*.py ../wps_jobs/wps_jobs/*.py ../wps_jobs/wps_jobs/**/*.py + uv run ruff check packages/wps-api/src packages/wps-shared/src packages/wps-jobs/src test-api: name: Python - API Test with coverage @@ -57,44 +54,41 @@ jobs: with: # For sonar-scanner to work properly we can't use a shallow fetch. fetch-depth: 0 + - name: Install uv + uses: astral-sh/setup-uv@v5 + with: + version: "0.9.11" - name: Cache .venv id: cache-venv uses: actions/cache@v4 with: - path: ~/work/wps/wps/api/.venv - key: ${{ runner.os }}-venv-poetry-1.8.3-${{ hashFiles('**/poetry.lock') }} - - name: Install python dependencies using poetry (api) + path: ~/work/wps/wps/backend/.venv + key: ${{ runner.os }}-venv-uv-0.9.11-${{ hashFiles('**/uv.lock') }} + - name: Install python dependencies using uv if: steps.cache-venv.outputs.cache-hit != 'true' - working-directory: ./api + working-directory: ./backend run: | # Install JDK apt-get update --fix-missing apt-get -y install default-jdk - poetry config virtualenvs.create true - poetry config virtualenvs.in-project false - poetry run python -m pip install --upgrade pip - poetry install - poetry run python -m pip install -U setuptools wheel - poetry run python -m pip install --no-build-isolation --no-cache-dir --force-reinstall gdal==$(gdal-config --version) - - name: Reinstall wps_shared - working-directory: ./api - run: | - poetry run python -m pip install --no-deps --force-reinstall ../wps_shared + uv sync --all-extras + uv pip install setuptools + uv pip install --no-build-isolation gdal==$(gdal-config --version) - name: Unit Test with coverage (api) - working-directory: ./api + working-directory: ./backend run: | - export LD_LIBRARY_PATH=$(poetry run python -m rpy2.situation LD_LIBRARY_PATH):${LD_LIBRARY_PATH} - export CLASSPATH=./libs/REDapp_Lib.jar:./libs/WTime.jar:./libs/hss-java.jar:$CLASSPATH + export LD_LIBRARY_PATH=$(uv run python -m rpy2.situation LD_LIBRARY_PATH):${LD_LIBRARY_PATH} + export CLASSPATH=./packages/wps-api/libs/REDapp_Lib.jar:./packages/wps-api/libs/WTime.jar:./packages/wps-api/libs/hss-java.jar:$CLASSPATH export ORIGINS=testorigin export SFMS_SECRET=secret - poetry run pytest -n auto --cov=app --cov-branch --cov-report=xml:coverage-reports/api-coverage-report.xml app/tests -x -o log_cli=true --disable-warnings -vvv + uv run pytest -n auto --cov=packages/wps-api/src/app --cov-branch --cov-report=xml:packages/wps-api/coverage-reports/api-coverage-report.xml packages/wps-api/src/app/tests -x -o log_cli=true --disable-warnings -vvv - name: Archive coverage report (api) uses: actions/upload-artifact@v5 with: name: api-coverage-report - path: ./api/coverage-reports/api-coverage-report.xml - test-wps-jobs: - name: Python - WPS Jobs Test with coverage + path: ./backend/packages/wps-api/coverage-reports/api-coverage-report.xml + test-wps-shared: + name: Python - WPS Shared Test with coverage runs-on: ubuntu-24.04 container: image: ghcr.io/bcgov/wps/wps-api-base:10-30-2025 @@ -105,42 +99,39 @@ jobs: with: # For sonar-scanner to work properly we can't use a shallow fetch. fetch-depth: 0 + - name: Install uv + uses: astral-sh/setup-uv@v5 + with: + version: "0.9.11" - name: Cache .venv id: cache-venv uses: actions/cache@v4 with: - path: ~/work/wps/wps/wps_jobs/.venv - key: ${{ runner.os }}-venv-poetry-1.8.3-${{ hashFiles('**/poetry.lock') }} - - name: Install python dependencies using poetry (wps_jobs) + path: ~/work/wps/wps/backend/.venv + key: ${{ runner.os }}-venv-uv-0.9.11-${{ hashFiles('**/uv.lock') }} + - name: Install python dependencies using uv if: steps.cache-venv.outputs.cache-hit != 'true' - working-directory: ./wps_jobs + working-directory: ./backend run: | # Install JDK apt-get update --fix-missing apt-get -y install default-jdk - poetry config virtualenvs.create true - poetry config virtualenvs.in-project false - poetry run python -m pip install --upgrade pip - poetry install - poetry run python -m pip install -U setuptools wheel - poetry run python -m pip install --no-build-isolation --no-cache-dir --force-reinstall gdal==$(gdal-config --version) - - name: Reinstall wps_shared - working-directory: ./wps_jobs - run: | - poetry run python -m pip install --force-reinstall ../wps_shared - - name: Unit Test with coverage (wps_jobs) - working-directory: ./wps_jobs + uv sync --all-extras + uv pip install setuptools + uv pip install --no-build-isolation gdal==$(gdal-config --version) + - name: Unit Test with coverage (wps_shared) + working-directory: ./backend run: | export ORIGINS=testorigin export SFMS_SECRET=secret - poetry run pytest -n auto --cov=wps_jobs --cov-branch --cov-report=xml:coverage-reports/wps-jobs-coverage-report.xml tests -x -o log_cli=true --disable-warnings -vvv - - name: Archive coverage report (wps_jobs) + uv run pytest --cov=packages/wps-shared/src/wps_shared --cov-branch --cov-report=xml:packages/wps-shared/coverage-reports/wps-shared-coverage-report.xml packages/wps-shared/src/wps_shared/tests -x -o log_cli=true --disable-warnings -vvv + - name: Archive coverage report (wps_shared) uses: actions/upload-artifact@v5 with: - name: wps-jobs-coverage-report - path: ./wps_jobs/coverage-reports/wps-jobs-coverage-report.xml - test-wps-shared: - name: Python - WPS Shared Test with coverage + name: wps-shared-coverage-report + path: ./backend/packages/wps-shared/coverage-reports/wps-shared-coverage-report.xml + test-wps-jobs: + name: Python - WPS Jobs Test with coverage runs-on: ubuntu-24.04 container: image: ghcr.io/bcgov/wps/wps-api-base:10-30-2025 @@ -151,36 +142,38 @@ jobs: with: # For sonar-scanner to work properly we can't use a shallow fetch. fetch-depth: 0 + - name: Install uv + uses: astral-sh/setup-uv@v5 + with: + version: "0.9.11" - name: Cache .venv id: cache-venv uses: actions/cache@v4 with: - path: ~/work/wps/wps/wps_shared/.venv - key: ${{ runner.os }}-venv-poetry-1.8.3-${{ hashFiles('**/poetry.lock') }} - - name: Install python dependencies using poetry (wps_shared) + path: ~/work/wps/wps/backend/.venv + key: ${{ runner.os }}-venv-uv-0.9.11-${{ hashFiles('**/uv.lock') }} + - name: Install python dependencies using uv if: steps.cache-venv.outputs.cache-hit != 'true' - working-directory: ./wps_shared + working-directory: ./backend run: | # Install JDK apt-get update --fix-missing apt-get -y install default-jdk - poetry config virtualenvs.create true - poetry config virtualenvs.in-project false - poetry run python -m pip install --upgrade pip - poetry install - poetry run python -m pip install -U setuptools wheel - poetry run python -m pip install --no-build-isolation --no-cache-dir --force-reinstall gdal==$(gdal-config --version) - - name: Unit Test with coverage (wps_shared) - working-directory: ./wps_shared + uv sync --all-extras + uv pip install setuptools + uv pip install --no-build-isolation gdal==$(gdal-config --version) + - name: Unit Test with coverage (wps_jobs) + working-directory: ./backend run: | + export LD_LIBRARY_PATH=$(uv run python -m rpy2.situation LD_LIBRARY_PATH):${LD_LIBRARY_PATH} export ORIGINS=testorigin export SFMS_SECRET=secret - poetry run pytest --cov=wps_shared --cov-branch --cov-report=xml:coverage-reports/wps-shared-coverage-report.xml wps_shared/tests -x -o log_cli=true --disable-warnings -vvv - - name: Archive coverage report (wps_shared) + uv run pytest --cov=packages/wps-jobs/src --cov-branch --cov-report=xml:packages/wps-jobs/coverage-reports/wps-jobs-coverage-report.xml packages/wps-jobs/src/tests -x -o log_cli=true --disable-warnings -vvv + - name: Archive coverage report (wps_jobs) uses: actions/upload-artifact@v5 with: - name: wps-shared-coverage-report - path: ./wps_shared/coverage-reports/wps-shared-coverage-report.xml + name: wps-jobs-coverage-report + path: ./backend/packages/wps-jobs/coverage-reports/wps-jobs-coverage-report.xml lint-and-test-web: name: Web - Lint, Test with coverage runs-on: ubuntu-24.04 @@ -232,7 +225,7 @@ jobs: upload-code-coverage: name: Coverage with CodeCov runs-on: ubuntu-24.04 - needs: [lint-and-test-web, test-api, test-wps-jobs, test-wps-shared] + needs: [lint-and-test-web, test-api, test-wps-shared, test-wps-jobs] steps: # we need to checkout, so that we have codecov.yml - name: Checkout repo diff --git a/.github/workflows/post_merge_integration.yml b/.github/workflows/post_merge_integration.yml index 3977c2b5f1..752094b65c 100644 --- a/.github/workflows/post_merge_integration.yml +++ b/.github/workflows/post_merge_integration.yml @@ -21,29 +21,27 @@ jobs: steps: - name: Checkout repo uses: actions/checkout@v6 + - name: Install uv + uses: astral-sh/setup-uv@v5 + with: + version: "0.9.11" - name: Cache .venv id: cache-venv uses: actions/cache@v4 with: - path: ~/work/wps/wps/api/.venv - key: ${{ runner.os }}-venv-poetry-1.8.3-${{ hashFiles('**/poetry.lock') }} - - name: Install python dependencies using poetry (api) + path: ~/work/wps/wps/backend/.venv + key: ${{ runner.os }}-venv-uv-0.9.11-${{ hashFiles('**/uv.lock') }} + - name: Install python dependencies using uv if: steps.cache-venv.outputs.cache-hit != 'true' - working-directory: ./api - run: | - poetry run python -m pip install --upgrade pip - poetry install - poetry run python -m pip install --no-build-isolation --no-cache-dir --force-reinstall gdal==$(gdal-config --version) - - name: Reinstall wps_shared - working-directory: ./api + working-directory: ./backend run: | - poetry run python -m pip install --no-deps --force-reinstall ../wps_shared - - name: Lint (api/wps_shared) - # We used to be able to do linting before installing gdal, but it's not possible anymore. - # We can however place it ahead of the R installs. - working-directory: ./api + uv sync --all-extras + uv pip install setuptools + uv pip install --no-build-isolation gdal==$(gdal-config --version) + - name: Lint (api/wps_shared/wps_jobs) + working-directory: ./backend run: | - poetry run ruff check app/*.py app/**/*.py ../wps_shared/wps_shared/*.py ../wps_shared/wps_shared/**/*.py ../wps_jobs/wps_jobs/*.py ../wps_jobs/wps_jobs/**/*.py + uv run ruff check packages/wps-api/src packages/wps-shared/src packages/wps-jobs/src test-api: name: Python - API Test with coverage @@ -57,43 +55,41 @@ jobs: with: # For sonar-scanner to work properly we can't use a shallow fetch. fetch-depth: 0 + - name: Install uv + uses: astral-sh/setup-uv@v5 + with: + version: "0.9.11" - name: Cache .venv id: cache-venv uses: actions/cache@v4 with: - path: ~/work/wps/wps/api/.venv - key: ${{ runner.os }}-venv-poetry-1.8.3-${{ hashFiles('**/poetry.lock') }} - - name: Install python dependencies using poetry (api) + path: ~/work/wps/wps/backend/.venv + key: ${{ runner.os }}-venv-uv-0.9.11-${{ hashFiles('**/uv.lock') }} + - name: Install python dependencies using uv if: steps.cache-venv.outputs.cache-hit != 'true' - working-directory: ./api + working-directory: ./backend run: | # Install JDK apt-get update --fix-missing apt-get -y install default-jdk - poetry config virtualenvs.create true - poetry config virtualenvs.in-project false - poetry run python -m pip install --upgrade pip - poetry install - poetry run python -m pip install --no-build-isolation --no-cache-dir --force-reinstall gdal==$(gdal-config --version) - - name: Reinstall wps_shared - working-directory: ./api - run: | - poetry run python -m pip install --no-deps --force-reinstall ../wps_shared + uv sync --all-extras + uv pip install setuptools + uv pip install --no-build-isolation gdal==$(gdal-config --version) - name: Unit Test with coverage (api) - working-directory: ./api + working-directory: ./backend run: | - export LD_LIBRARY_PATH=$(poetry run python -m rpy2.situation LD_LIBRARY_PATH):${LD_LIBRARY_PATH} - export CLASSPATH=./libs/REDapp_Lib.jar:./libs/WTime.jar:./libs/hss-java.jar:$CLASSPATH + export LD_LIBRARY_PATH=$(uv run python -m rpy2.situation LD_LIBRARY_PATH):${LD_LIBRARY_PATH} + export CLASSPATH=./packages/wps-api/libs/REDapp_Lib.jar:./packages/wps-api/libs/WTime.jar:./packages/wps-api/libs/hss-java.jar:$CLASSPATH export ORIGINS=testorigin export SFMS_SECRET=secret - poetry run pytest -n auto --cov=app --cov-branch --cov-report=xml:coverage-reports/api-coverage-report.xml app/tests -x -o log_cli=true --disable-warnings -vvv + uv run pytest -n auto --cov=packages/wps-api/src/app --cov-branch --cov-report=xml:packages/wps-api/coverage-reports/api-coverage-report.xml packages/wps-api/src/app/tests -x -o log_cli=true --disable-warnings -vvv - name: Archive coverage report (api) uses: actions/upload-artifact@v5 with: name: api-coverage-report - path: ./api/coverage-reports/api-coverage-report.xml - test-wps-jobs: - name: Python - WPS Jobs Test with coverage + path: ./backend/packages/wps-api/coverage-reports/api-coverage-report.xml + test-wps-shared: + name: Python - WPS Shared Test with coverage runs-on: ubuntu-24.04 container: image: ghcr.io/bcgov/wps/wps-api-base:10-30-2025 @@ -104,42 +100,39 @@ jobs: with: # For sonar-scanner to work properly we can't use a shallow fetch. fetch-depth: 0 + - name: Install uv + uses: astral-sh/setup-uv@v5 + with: + version: "0.9.11" - name: Cache .venv id: cache-venv uses: actions/cache@v4 with: - path: ~/work/wps/wps/wps_jobs/.venv - key: ${{ runner.os }}-venv-poetry-1.8.3-${{ hashFiles('**/poetry.lock') }} - - name: Install python dependencies using poetry (wps_jobs) + path: ~/work/wps/wps/backend/.venv + key: ${{ runner.os }}-venv-uv-0.9.11-${{ hashFiles('**/uv.lock') }} + - name: Install python dependencies using uv if: steps.cache-venv.outputs.cache-hit != 'true' - working-directory: ./wps_jobs + working-directory: ./backend run: | # Install JDK apt-get update --fix-missing apt-get -y install default-jdk - poetry config virtualenvs.create true - poetry config virtualenvs.in-project false - poetry run python -m pip install --upgrade pip - poetry install - poetry run python -m pip install -U setuptools wheel - poetry run python -m pip install --no-build-isolation --no-cache-dir --force-reinstall gdal==$(gdal-config --version) - - name: Reinstall wps_shared - working-directory: ./wps_jobs - run: | - poetry run python -m pip install --force-reinstall ../wps_shared - - name: Unit Test with coverage (wps_jobs) - working-directory: ./wps_jobs + uv sync --all-extras + uv pip install setuptools + uv pip install --no-build-isolation gdal==$(gdal-config --version) + - name: Unit Test with coverage (wps_shared) + working-directory: ./backend run: | export ORIGINS=testorigin export SFMS_SECRET=secret - poetry run pytest -n auto --cov=wps_jobs --cov-branch --cov-report=xml:coverage-reports/wps-jobs-coverage-report.xml tests -x -o log_cli=true --disable-warnings -vvv - - name: Archive coverage report (wps_jobs) + uv run pytest --cov=packages/wps-shared/src/wps_shared --cov-branch --cov-report=xml:packages/wps-shared/coverage-reports/wps-shared-coverage-report.xml packages/wps-shared/src/wps_shared/tests -x -o log_cli=true --disable-warnings -vvv + - name: Archive coverage report (wps_shared) uses: actions/upload-artifact@v5 with: - name: wps-jobs-coverage-report - path: ./wps_jobs/coverage-reports/wps-jobs-coverage-report.xml - test-wps-shared: - name: Python - WPS Shared Test with coverage + name: wps-shared-coverage-report + path: ./backend/packages/wps-shared/coverage-reports/wps-shared-coverage-report.xml + test-wps-jobs: + name: Python - WPS Jobs Test with coverage runs-on: ubuntu-24.04 container: image: ghcr.io/bcgov/wps/wps-api-base:10-30-2025 @@ -150,36 +143,38 @@ jobs: with: # For sonar-scanner to work properly we can't use a shallow fetch. fetch-depth: 0 + - name: Install uv + uses: astral-sh/setup-uv@v5 + with: + version: "0.9.11" - name: Cache .venv id: cache-venv uses: actions/cache@v4 with: - path: ~/work/wps/wps/wps_shared/.venv - key: ${{ runner.os }}-venv-poetry-1.8.3-${{ hashFiles('**/poetry.lock') }} - - name: Install python dependencies using poetry (wps_shared) + path: ~/work/wps/wps/backend/.venv + key: ${{ runner.os }}-venv-uv-0.9.11-${{ hashFiles('**/uv.lock') }} + - name: Install python dependencies using uv if: steps.cache-venv.outputs.cache-hit != 'true' - working-directory: ./wps_shared + working-directory: ./backend run: | # Install JDK apt-get update --fix-missing apt-get -y install default-jdk - poetry config virtualenvs.create true - poetry config virtualenvs.in-project false - poetry run python -m pip install --upgrade pip - poetry install - poetry run python -m pip install -U setuptools wheel - poetry run python -m pip install --no-build-isolation --no-cache-dir --force-reinstall gdal==$(gdal-config --version) - - name: Unit Test with coverage (wps_shared) - working-directory: ./wps_shared + uv sync --all-extras + uv pip install setuptools + uv pip install --no-build-isolation gdal==$(gdal-config --version) + - name: Unit Test with coverage (wps_jobs) + working-directory: ./backend run: | + export LD_LIBRARY_PATH=$(uv run python -m rpy2.situation LD_LIBRARY_PATH):${LD_LIBRARY_PATH} export ORIGINS=testorigin export SFMS_SECRET=secret - poetry run pytest --cov=wps_shared --cov-branch --cov-report=xml:coverage-reports/wps-shared-coverage-report.xml wps_shared/tests -x -o log_cli=true --disable-warnings -vvv - - name: Archive coverage report (wps_shared) + uv run pytest --cov=packages/wps-jobs/src --cov-branch --cov-report=xml:packages/wps-jobs/coverage-reports/wps-jobs-coverage-report.xml packages/wps-jobs/src/tests -x -o log_cli=true --disable-warnings -vvv + - name: Archive coverage report (wps_jobs) uses: actions/upload-artifact@v5 with: - name: wps-shared-coverage-report - path: ./wps_shared/coverage-reports/wps-shared-coverage-report.xml + name: wps-jobs-coverage-report + path: ./backend/packages/wps-jobs/coverage-reports/wps-jobs-coverage-report.xml lint-and-test-web: name: Web - Lint, Test with coverage runs-on: ubuntu-24.04 @@ -237,7 +232,7 @@ jobs: upload-code-coverage: name: Coverage with CodeCov runs-on: ubuntu-24.04 - needs: [lint-and-test-web, test-api, test-wps-jobs, test-wps-shared] + needs: [lint-and-test-web, test-api, test-wps-shared, test-wps-jobs] steps: # we need to checkout, so that we have codecov.yml - name: Checkout repo diff --git a/.gitignore b/.gitignore index 534f931baf..c4a650674a 100644 --- a/.gitignore +++ b/.gitignore @@ -163,4 +163,7 @@ Pods # bruno envs **/prod.bru -**/local.bru \ No newline at end of file +**/local.bru + +# hypothesis directories +.hypothesis/ \ No newline at end of file diff --git a/.vscode/launch.json b/.vscode/launch.json index dc1f9f7cda..78d50f082e 100644 --- a/.vscode/launch.json +++ b/.vscode/launch.json @@ -8,16 +8,24 @@ "name": "api", "type": "debugpy", "request": "launch", - "program": "api/app/main.py", + "program": "${workspaceFolder}/backend/packages/wps-api/src/app/main.py", "console": "integratedTerminal", - "justMyCode": false + "justMyCode": false, + "cwd": "${workspaceFolder}/backend", + "python": "${workspaceFolder}/backend/.venv/bin/python", + "env": { + "R_HOME": "/Library/Frameworks/R.framework/Resources", + "DYLD_LIBRARY_PATH": "/Library/Frameworks/R.framework/Resources/lib" + } }, { "name": "nats", "type": "debugpy", "request": "launch", - "program": "api/app/auto_spatial_advisory/nats_consumer.py", - "console": "integratedTerminal" + "program": "${workspaceFolder}/backend/packages/wps-api/src/app/auto_spatial_advisory/nats_consumer.py", + "console": "integratedTerminal", + "cwd": "${workspaceFolder}/backend", + "python": "${workspaceFolder}/backend/.venv/bin/python" }, { "name": "sfms", @@ -30,13 +38,17 @@ "name": "app.jobs.noon_forecasts", "type": "debugpy", "request": "launch", - "module": "app.jobs.noon_forecasts" + "module": "app.jobs.noon_forecasts", + "cwd": "${workspaceFolder}/backend", + "python": "${workspaceFolder}/backend/.venv/bin/python" }, { "name": "app.jobs.hourly_actuals", "type": "debugpy", "request": "launch", - "module": "app.jobs.hourly_actuals" + "module": "app.jobs.hourly_actuals", + "cwd": "${workspaceFolder}/backend", + "python": "${workspaceFolder}/backend/.venv/bin/python" }, { "name": "backup unit tests", @@ -51,6 +63,8 @@ "request": "launch", "module": "app.auto_spatial_advisory.local.process_hfi_local", "console": "integratedTerminal", + "cwd": "${workspaceFolder}/backend", + "python": "${workspaceFolder}/backend/.venv/bin/python", "args": [ "2024-09-01", "2024-09-01", @@ -62,7 +76,9 @@ "type": "debugpy", "request": "launch", "module": "app.jobs.fuel_type_areas_per_zone", - "console": "integratedTerminal" + "console": "integratedTerminal", + "cwd": "${workspaceFolder}/backend", + "python": "${workspaceFolder}/backend/.venv/bin/python" }, { "name": "asa - process stats", @@ -70,6 +86,8 @@ "request": "launch", "module": "app.auto_spatial_advisory.local.process_stats_local", "console": "integratedTerminal", + "cwd": "${workspaceFolder}/backend", + "python": "${workspaceFolder}/backend/.venv/bin/python", "args": [ "2024-08-06", "2024-08-08", @@ -82,13 +100,17 @@ "request": "launch", "module": "app.auto_spatial_advisory.local.import_fire_zones", "console": "integratedTerminal", + "cwd": "${workspaceFolder}/backend", + "python": "${workspaceFolder}/backend/.venv/bin/python" }, { "name": "app.jobs.rdps_sfms", "type": "debugpy", "request": "launch", "module": "app.jobs.rdps_sfms", - "console": "integratedTerminal" + "console": "integratedTerminal", + "cwd": "${workspaceFolder}/backend", + "python": "${workspaceFolder}/backend/.venv/bin/python" }, { "name": "local critical hours", @@ -96,6 +118,8 @@ "request": "launch", "module": "app.auto_spatial_advisory.critical_hours", "console": "integratedTerminal", + "cwd": "${workspaceFolder}/backend", + "python": "${workspaceFolder}/backend/.venv/bin/python", "args": [ "-r", "3460" @@ -109,6 +133,8 @@ "request": "launch", "module": "app.auto_spatial_advisory.hfi_minimum_wind_speed", "console": "integratedTerminal", + "cwd": "${workspaceFolder}/backend", + "python": "${workspaceFolder}/backend/.venv/bin/python", "args": [ "-r", "3460" @@ -120,6 +146,8 @@ "request": "launch", "module": "app.auto_spatial_advisory.hfi_percent_conifer", "console": "integratedTerminal", + "cwd": "${workspaceFolder}/backend", + "python": "${workspaceFolder}/backend/.venv/bin/python", "args": [ "-r", "3460" @@ -131,6 +159,8 @@ "request": "launch", "module": "app.jobs.sfms_calculations", "console": "integratedTerminal", + "cwd": "${workspaceFolder}/backend", + "python": "${workspaceFolder}/backend/.venv/bin/python", "args": [ "2024-10-23 12" ] @@ -141,6 +171,82 @@ "request": "launch", "module": "app.jobs.fuel_type_areas_per_zone", "console": "integratedTerminal", + "cwd": "${workspaceFolder}/backend", + "python": "${workspaceFolder}/backend/.venv/bin/python" + }, + { + "name": "env_canada GDPS", + "type": "debugpy", + "justMyCode": false, + "request": "launch", + "cwd": "${workspaceFolder}/backend", + "python": "${workspaceFolder}/backend/.venv/bin/python", + "module": "weather_model_jobs.env_canada", + "args": [ + "GDPS" + ] + }, + { + "name": "env_canada HRDPS", + "type": "debugpy", + "request": "launch", + "cwd": "${workspaceFolder}/backend", + "python": "${workspaceFolder}/backend/.venv/bin/python", + "module": "weather_model_jobs.env_canada", + "args": [ + "HRDPS" + ] + }, + { + "name": "env_canada RDPS", + "type": "debugpy", + "request": "launch", + "cwd": "${workspaceFolder}/backend", + "python": "${workspaceFolder}/backend/.venv/bin/python", + "module": "weather_model_jobs.env_canada", + "args": [ + "RDPS" + ] + }, + { + "name": "noaa GFS", + "type": "debugpy", + "request": "launch", + "cwd": "${workspaceFolder}/backend", + "python": "${workspaceFolder}/backend/.venv/bin/python", + "module": "weather_model_jobs.noaa", + "args": [ + "GFS" + ] + }, + { + "name": "noaa NAM", + "type": "debugpy", + "request": "launch", + "cwd": "${workspaceFolder}/backend", + "python": "${workspaceFolder}/backend/.venv/bin/python", + "module": "weather_model_jobs.noaa", + "args": [ + "NAM" + ] + }, + { + "name": "fuel layer processor job", + "type": "debugpy", + "request": "launch", + "cwd": "${workspaceFolder}/backend", + "python": "${workspaceFolder}/backend/.venv/bin/python", + "module": "fuel_raster", + "console": "integratedTerminal", + "args": [] + }, + { + "name": "ecmwf IFS", + "type": "debugpy", + "request": "launch", + "cwd": "${workspaceFolder}/backend", + "python": "${workspaceFolder}/backend/.venv/bin/python", + "module": "weather_model_jobs.ecmwf", }, { "name": "Chrome", diff --git a/.vscode/settings.json b/.vscode/settings.json index 34f0a5c0ea..860b011d79 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -1,10 +1,154 @@ { - "python.defaultInterpreterPath": "${workspaceFolder}/api/.venv/bin/python", + // Python + "python.defaultInterpreterPath": "${workspaceFolder}/backend/.venv/bin/python", + "python.terminal.activateEnvironment": true, "python.testing.pytestEnabled": true, "python.testing.unittestEnabled": false, - "python.testing.promptToConfigure": true, - "python.envFile": "${workspaceFolder}/.env.python", + "python.testing.cwd": "${workspaceFolder}/backend", "python.testing.pytestArgs": [ - "api" + "-v", + "--tb=short", + "--import-mode=importlib" ], -} \ No newline at end of file + "python.analysis.extraPaths": [ + "${workspaceFolder}/backend/packages/wps-api/src", + "${workspaceFolder}/backend/packages/wps-jobs/src", + "${workspaceFolder}/backend/packages/wps-shared/src" + ], + "[python]": { + "editor.defaultFormatter": "charliermarsh.ruff" + }, + "autoDocstring.docstringFormat": "sphinx-notypes", + "autoDocstring.startOnNewLine": true, + // General Editor + "editor.codeActionsOnSave": { + "source.fixAll": "explicit" + }, + "editor.formatOnSave": true, + "editor.rulers": [ + 100 + ], + "files.exclude": { + ".github": false, + "**/__pycache__": true, + "**/.pytest_cache": true, + "**/python_cache": true, + "**/.venv": true + }, + // JavaScript/TypeScript + "eslint.format.enable": true, + "eslint.run": "onSave", + "eslint.validate": [ + "javascript", + "javascriptreact", + "typescript", + "typescriptreact" + ], + "typescript.preferences.importModuleSpecifier": "non-relative", + // HTML + "[html]": { + "editor.formatOnSave": false + }, + // YAML + "[yaml]": { + "editor.defaultFormatter": "esbenp.prettier-vscode", + "editor.insertSpaces": true, + "editor.tabSize": 2, + "editor.formatOnSave": true + }, + // JSON + "[json]": { + "editor.defaultFormatter": "vscode.json-language-features" + }, + "[jsonc]": { + "editor.defaultFormatter": "vscode.json-language-features" + }, + // Spell checker + "cSpell.words": [ + "actuals", + "aiobotocore", + "aiohttp", + "Albers", + "allclose", + "anyio", + "APCP", + "astype", + "asyncpg", + "autoflush", + "Behaviour", + "botocore", + "cffdrs", + "colour", + "cutline", + "CWFIS", + "determinates", + "dtype", + "excinfo", + "fastapi", + "FBAN", + "ffmc", + "fireweather", + "firezone", + "FWIs", + "GDPS", + "geoalchemy", + "GEOGCS", + "geopackage", + "geospatial", + "geotiff", + "gpkg", + "grib", + "gribs", + "HAINES", + "Hasher", + "hourlies", + "HRDPS", + "idir", + "Indeterminates", + "Kamloops", + "luxon", + "maxx", + "maxy", + "miny", + "morecast", + "nats", + "ndarray", + "Neighbour", + "numba", + "ORJSON", + "osgeo", + "PMTILES", + "polygonize", + "Polygonized", + "polygonizing", + "PRECIP", + "PRIMEM", + "PROJCS", + "pydantic", + "pyproj", + "RDPS", + "reduxjs", + "reproject", + "rocketchat", + "rollup", + "rtol", + "sessionmaker", + "sfms", + "sqlalchemy", + "starlette", + "testid", + "tobytes", + "upsampled", + "uvicorn", + "vectorize", + "VSIL", + "vsimem", + "vsis", + "WDIR", + "wfwx", + "Whitebox", + "wpsread" + ], + // Java + "java.configuration.updateBuildConfiguration": "interactive" +} diff --git a/.vscode/wps.code-workspace b/.vscode/wps.code-workspace deleted file mode 100644 index 1cd4248581..0000000000 --- a/.vscode/wps.code-workspace +++ /dev/null @@ -1,151 +0,0 @@ -{ - "folders": [ - { - "path": ".." - }, - { - "path": "../wps_jobs" - }, - { - "path": "../wps_shared" - } - ], - "settings": { - // General - "editor.codeActionsOnSave": { - "source.fixAll": "explicit" - }, - "editor.formatOnSave": true, - "editor.rulers": [ - 100 - ], - "files.exclude": { - ".github": false, - "**/.pytest_cache": true, - "**/__pycache__**": true, - "**/python_cache": true, - "**/.venv": true - }, - // Python - "[python]": { - "editor.defaultFormatter": "charliermarsh.ruff", - }, - "autoDocstring.docstringFormat": "sphinx-notypes", - "autoDocstring.startOnNewLine": true, - // JavaScript/TypeScript - "eslint.format.enable": true, - "eslint.run": "onSave", - "eslint.validate": [ - "javascript", - "javascriptreact", - "typescript", - "typescriptreact" - ], - "typescript.preferences.importModuleSpecifier": "non-relative", - // HTML - "[html]": { - "editor.formatOnSave": false - }, - // YAML - "[yaml]": { - "editor.defaultFormatter": "esbenp.prettier-vscode", - "editor.insertSpaces": true, - "editor.tabSize": 2, - "editor.formatOnSave": true - }, - // JSON - "[json]": { - "editor.defaultFormatter": "vscode.json-language-features" - }, - "[jsonc]": { - "editor.defaultFormatter": "vscode.json-language-features" - }, - // Spell checker - "cSpell.words": [ - "actuals", - "aiobotocore", - "aiohttp", - "Albers", - "allclose", - "anyio", - "APCP", - "astype", - "asyncpg", - "autoflush", - "Behaviour", - "botocore", - "cffdrs", - "colour", - "cutline", - "CWFIS", - "determinates", - "dtype", - "excinfo", - "fastapi", - "FBAN", - "ffmc", - "fireweather", - "firezone", - "FWIs", - "GDPS", - "geoalchemy", - "GEOGCS", - "geopackage", - "geospatial", - "geotiff", - "gpkg", - "grib", - "gribs", - "HAINES", - "Hasher", - "hourlies", - "HRDPS", - "idir", - "Indeterminates", - "Kamloops", - "luxon", - "maxx", - "maxy", - "miny", - "morecast", - "nats", - "ndarray", - "Neighbour", - "numba", - "ORJSON", - "osgeo", - "PMTILES", - "polygonize", - "Polygonized", - "polygonizing", - "PRECIP", - "PRIMEM", - "PROJCS", - "pydantic", - "pyproj", - "RDPS", - "reduxjs", - "reproject", - "rocketchat", - "rollup", - "rtol", - "sessionmaker", - "sfms", - "sqlalchemy", - "starlette", - "testid", - "tobytes", - "upsampled", - "uvicorn", - "vectorize", - "VSIL", - "vsimem", - "vsis", - "WDIR", - "wfwx", - "Whitebox", - "wpsread" - ], - "java.configuration.updateBuildConfiguration": "interactive" - } -} \ No newline at end of file diff --git a/Dockerfile b/Dockerfile index 5cb3bed6d0..06231e5426 100644 --- a/Dockerfile +++ b/Dockerfile @@ -13,6 +13,9 @@ ARG USER_GID=1000 # Switch to root USER 0 +# Install uv +COPY --from=ghcr.io/astral-sh/uv:0.9.11 /uv /uvx /bin/ + # Create a directory for the app to run in, and grant worker access RUN mkdir /app RUN chown "$USERNAME" /app @@ -23,19 +26,33 @@ USER $USERNAME WORKDIR /app -# Copy poetry files. -COPY --chown=$USERNAME:$USER_GID ./api/pyproject.toml ./api/poetry.lock /app/ +# Copy workspace configuration and package manifests +COPY ./backend/pyproject.toml /app/ +COPY ./backend/uv.lock /app/ +COPY ./backend/packages/wps-api/pyproject.toml /app/packages/wps-api/ +COPY ./backend/packages/wps-shared/pyproject.toml /app/packages/wps-shared/ +COPY ./backend/packages/wps-shared/src /app/packages/wps-shared/src + +# Switch to root to set file permissions +USER 0 + +# Set configuration files to read-only for security +RUN chmod 444 /app/pyproject.toml /app/uv.lock \ + /app/packages/wps-api/pyproject.toml \ + /app/packages/wps-shared/pyproject.toml +RUN chmod -R a-w /app/packages/wps-shared/src -COPY ./wps_shared /wps_shared +# Switch back to non-root user +USER $USERNAME -# Install dependencies. -RUN poetry install --without dev +# Install dependencies using uv +RUN uv sync --frozen --no-dev --package wps-api -RUN poetry run python -m pip install --upgrade pip +# Install setuptools required for GDAL build +RUN uv pip install setuptools -RUN poetry run python -m pip install -U setuptools wheel # Get a python binding for gdal that matches the version of gdal we have installed. -RUN poetry run python -m pip install --no-build-isolation --no-cache-dir --force-reinstall gdal==$(gdal-config --version) +RUN uv pip install --no-build-isolation --no-cache-dir --force-reinstall gdal==$(gdal-config --version) # Stage 2: Prepare the final image, including copying Python packages from Stage 1. FROM ${DOCKER_IMAGE} @@ -48,51 +65,58 @@ ARG USER_GID=1000 # Switch to root USER 0 +# Install uv +COPY --from=ghcr.io/astral-sh/uv:0.9.11 /uv /uvx /bin/ + # Create a directory for the app to run in, and grant worker access RUN mkdir /app RUN chown "$USERNAME" /app WORKDIR /app -# Copy poetry files. -COPY --from=builder --chown=$USERNAME:$USER_GID /app/pyproject.toml /app/poetry.lock /app/ +# Copy workspace and package configuration +COPY --from=builder /app/pyproject.toml /app/ +COPY --from=builder /app/packages/wps-api/pyproject.toml /app/packages/wps-api/ +COPY --from=builder /app/packages/wps-shared/pyproject.toml /app/packages/wps-shared/ # Switch back to our non-root user USER $USERNAME -# Copy the app: -COPY ./api/app /app/app +# Copy the app from new src layout: +COPY ./backend/packages/wps-api/src/app /app/app # TODO: we need to do this better. RUN mkdir /app/advisory -COPY ./api/advisory /app/advisory +COPY ./backend/packages/wps-api/advisory /app/advisory # Copy java libs: RUN mkdir /app/libs -COPY ./api/libs /app/libs +COPY ./backend/packages/wps-api/libs /app/libs # Copy alembic: -COPY ./api/alembic /app/alembic -COPY ./api/alembic.ini /app +COPY ./backend/packages/wps-api/alembic /app/alembic +COPY ./backend/packages/wps-api/alembic.ini /app # Copy pre-start.sh (it will be run on startup): -COPY ./api/prestart.sh /app -COPY ./api/start.sh /app +COPY ./backend/packages/wps-api/prestart.sh /app +COPY ./backend/packages/wps-api/start.sh /app -# Make poetry happy by copying wps_shared -COPY ./wps_shared /wps_shared +# Make uv happy by copying wps_shared +COPY ./backend/packages/wps-shared/src /app/packages/wps-shared/src -# Copy installed Python packages (the chown lets us install the dev packages later without root if we want) -COPY --from=builder --chown=$USERNAME:$USER_GID /home/worker/.cache/pypoetry/virtualenvs /home/worker/.cache/pypoetry/virtualenvs +# Copy installed Python packages +COPY --from=builder /app/.venv /app/.venv # The fastapi docker image defaults to port 80, but openshift doesn't allow non-root users port 80. EXPOSE 8080 # Set the classpath to include copied libs ENV CLASSPATH=/app/libs/REDapp_Lib.jar:/app/libs/WTime.jar:/app/libs/hss-java.jar:${CLASSPATH} -# Tell poetry where to find the cache -ENV POETRY_CACHE_DIR="/home/${USERNAME}/.cache/pypoetry" -# Put poetry on the path -ENV PATH="/home/${USERNAME}/.local/bin:${PATH}" +# Add .venv to PATH +ENV PATH="/app/.venv/bin:${PATH}" +# Set virtual env location +ENV VIRTUAL_ENV="/app/.venv" # root user please USER 0 -# We don't know what user poetry is going to run as, so we give everyone write access directories +# Remove write permissions from copied configuration and source files for security +RUN chmod -R a-w /app/pyproject.toml /app/packages/wps-api/pyproject.toml /app/advisory /app/libs /app/alembic /app/alembic.ini /app/prestart.sh /app/start.sh /app/packages/wps-shared/src +# We don't know what user uv is going to run as, so we give everyone write access directories # in the app folder. We need write access for .pyc files to be created. .pyc files are good, # they speed up python. RUN chmod a+w $(find /app/app -type d) @@ -101,4 +125,4 @@ RUN chmod a+w $(find /app/app -type d) # to test locally with similar conditions to what we may find in openshift. USER 1001 -CMD ["./start.sh"] \ No newline at end of file +CMD ["./start.sh"] diff --git a/Dockerfile.jobs b/Dockerfile.jobs index c04a836d5a..67a404052e 100644 --- a/Dockerfile.jobs +++ b/Dockerfile.jobs @@ -13,6 +13,9 @@ ARG USER_GID=1010 # Switch to root USER 0 +# Install uv +COPY --from=ghcr.io/astral-sh/uv:0.9.11 /uv /uvx /bin/ + # Create a directory for the jobs to run from, and grant worker access RUN mkdir /app RUN chown "$USERNAME" /app @@ -21,17 +24,33 @@ WORKDIR /app # Switch back to our non-root user USER $USERNAME -# Copy poetry files. -COPY --chown=$USERNAME:$USER_GID ./wps_jobs/pyproject.toml ./wps_jobs/poetry.lock /app/ +# Copy workspace configuration and package manifests +COPY ./backend/pyproject.toml /app/ +COPY ./backend/uv.lock /app/ +COPY ./backend/packages/wps-jobs/pyproject.toml /app/packages/wps-jobs/ +COPY ./backend/packages/wps-shared/pyproject.toml /app/packages/wps-shared/ +COPY ./backend/packages/wps-shared/src /app/packages/wps-shared/src + +# Switch to root to set file permissions +USER 0 -COPY ./wps_shared /wps_shared +# Set configuration files to read-only for security +RUN chmod 444 /app/pyproject.toml /app/uv.lock \ + /app/packages/wps-jobs/pyproject.toml \ + /app/packages/wps-shared/pyproject.toml +RUN chmod -R a-w /app/packages/wps-shared/src -# Install dependencies. -RUN poetry install --without dev --no-root +# Switch back to non-root user +USER $USERNAME + +# Install dependencies using uv +RUN uv sync --frozen --no-dev --package wps-jobs + +# Install setuptools required for GDAL build +RUN uv pip install setuptools -RUN poetry run python -m pip install -U setuptools wheel # Get a python binding for gdal that matches the version of gdal we have installed. -RUN poetry run python -m pip install --no-build-isolation --no-cache-dir --force-reinstall \ +RUN uv pip install --no-build-isolation --no-cache-dir --force-reinstall \ gdal==$(gdal-config --version) # Stage 2: Prepare the final image, including copying Python packages from Stage 1. @@ -45,34 +64,43 @@ ARG USER_GID=1010 # Switch to root USER 0 +# Install uv +COPY --from=ghcr.io/astral-sh/uv:0.9.11 /uv /uvx /bin/ + # Create a directory for the app to run in, and grant worker access RUN mkdir /app && chown "$USERNAME" /app WORKDIR /app -# Copy poetry files. -COPY --from=builder --chown=$USERNAME:$USER_GID /app/pyproject.toml /app/poetry.lock /app/ +# Copy workspace and package configuration +COPY --from=builder /app/pyproject.toml /app/ +COPY --from=builder /app/packages/wps-jobs/pyproject.toml /app/packages/wps-jobs/ +COPY --from=builder /app/packages/wps-shared/pyproject.toml /app/packages/wps-shared/ # Switch back to our non-root user USER $USERNAME -# Copy the app: -COPY ./wps_jobs/wps_jobs /app/wps_jobs -COPY ./wps_shared /wps_shared +# Copy the jobs from src layout: +COPY ./backend/packages/wps-jobs/src /app +COPY ./backend/packages/wps-shared/src /app/packages/wps-shared/src -# Copy installed Python packages (the chown lets us install the dev packages later without root if we want) -COPY --from=builder --chown=$USERNAME:$USER_GID /home/worker/.cache/pypoetry/virtualenvs /home/worker/.cache/pypoetry/virtualenvs +# Copy installed Python packages +COPY --from=builder /app/.venv /app/.venv -# Tell poetry where to find the cache -ENV POETRY_CACHE_DIR="/home/${USERNAME}/.cache/pypoetry" -# Put poetry on the path -ENV PATH="/home/${USERNAME}/.local/bin:${PATH}" +# Add .venv to PATH +ENV PATH="/app/.venv/bin:${PATH}" +# Set virtual env location +ENV VIRTUAL_ENV="/app/.venv" # root user please USER 0 -# We don't know what user poetry is going to run as, so we give everyone write access directories +# Create writable data directory for library caches (e.g., herbie BallTree) +RUN mkdir -p /data && chmod 777 /data +# Remove write permissions from copied configuration and source files for security +RUN chmod -R a-w /app/pyproject.toml /app/packages/wps-jobs/pyproject.toml /app/weather_model_jobs /app/packages/wps-shared/src +# We don't know what user uv is going to run as, so we give everyone write access directories # in the app folder. We need write access for .pyc files to be created. .pyc files are good, # they speed up python. -RUN chmod a+w $(find /app/wps_jobs -type d) +RUN chmod a+w /app && chmod a+w $(find /app/weather_model_jobs -type d) # Openshift runs with a random non-root user, so switching our user to 1001 allows us # to test locally with similar conditions to what we may find in openshift. diff --git a/README.md b/README.md index 4cc5044557..71f9354e8e 100644 --- a/README.md +++ b/README.md @@ -33,7 +33,7 @@ Wildfire Predictive Services to support decision making in prevention, preparedn #### Running the api alone -Refer to [api/README.md](api/README.md). +Refer to [backend/packages/wps-api/README.md](backend/packages/wps-api/README.md). #### Running the front end alone diff --git a/api/.coveragerc b/api/.coveragerc deleted file mode 100644 index 1e96bb2276..0000000000 --- a/api/.coveragerc +++ /dev/null @@ -1,3 +0,0 @@ -[run] -omit = - app/utils/redapp.py diff --git a/api/.dockerignore b/api/.dockerignore deleted file mode 100644 index e47b044714..0000000000 --- a/api/.dockerignore +++ /dev/null @@ -1,15 +0,0 @@ -**/*.zip -**/*.grib2 -grib -.vscode -.github -.ipynb_checkpoints -.vscode -**/__pycache__ -**/*.pyc -python_cache -junk/**/* -junk -scripts/**/* -scripts -*/nbconvert/* \ No newline at end of file diff --git a/api/Dockerfile b/api/Dockerfile deleted file mode 100644 index 25ec6a6605..0000000000 --- a/api/Dockerfile +++ /dev/null @@ -1,93 +0,0 @@ -# NOTE: -# This Dockerfile is for local development only! - -# debian would match more closely what we have in production, and would probably be ideal, -# but it's also a pain working with because debian is so old. -FROM ubuntu:22.04 - -ARG USERNAME=worker -ARG USER_UID=1000 -ARG USER_GID=$USER_UID - -# Tell r-base not to wait for interactive input. -ENV DEBIAN_FRONTEND=noninteractive - -# Install dependancies needed by python developer packages -# One should really run all these installs and the update in one go - for a consistent install -# but ease of development trumps consistency in this instance: it's easer to have more -# faster running steps that can fail, that one big monster install that takes forever -# and fails. -# NOTE: Once we no longer need pyodbc, please remove the apt-get update and install commands below. -RUN apt-get -y update -RUN apt-get -y install unixodbc-dev -# Install old (2.4.*; current debian) version of gdal -# cffdrs requires libudunits2-dev -RUN apt-get -y install libgdal-dev libudunits2-dev - -# Install R -RUN apt-get update --fix-missing && apt-get -y install r-base - -# Install cffdrs -RUN R -e "install.packages('cffdrs')" - -# Install some other dependancies -RUN apt-get -y install git build-essential python3 python3-dev python3-pip curl vim - -# Install JDK -RUN apt-get -y install default-jdk - -# We could install poetry manually, but it's easier to use apt. -RUN apt-get -y install python3-poetry -# Poetry expects "python", but by default, on ubuntu, you need to specify "python3", so -# we work around that, by using the python3-poetry command. -RUN apt-get -y install python-is-python3 - -# from: https://code.visualstudio.com/remote/advancedcontainers/add-nonroot-user -RUN groupadd --gid $USER_GID $USERNAME \ - && useradd --uid $USER_UID --gid $USER_GID -m $USERNAME - -RUN mkdir /app -RUN chown worker /app -USER worker -ENV PATH="/home/worker/.local/bin:${PATH}" - -WORKDIR /app - -# Update pip -RUN python3 -m pip install --upgrade pip - -# Copy poetry files. -COPY pyproject.toml poetry.lock ./ - -COPY --chown=worker:worker poetry.lock pyproject.toml ./ -RUN python3 -m pip install cachecontrol - -RUN poetry install - -# We can't have this inside pyproject.toml because the gdal version differs from platform to platform. -# To figure out what version of pygdal you need, run gdal-config -RUN poetry run python -m pip install pygdal==3.4.1.10 - -ENV PATH="/home/worker/.local/bin:${PATH}" - -COPY ./app /app/app -# TODO: we need to do this better. -RUN mkdir /app/advisory -COPY ./advisory /app/advisory -RUN mkdir /app/libs -COPY ./libs /app/libs - -# root user please -USER 0 -# We don't know what user poetry is going to run as, so we give everyone write access directories -# in the app folder. We need write access for .pyc files to be created. .pyc files are good, -# they speed up python. -RUN chmod a+w $(find /app/app -type d) - -USER worker - -EXPOSE 8080 - -ENV CLASSPATH=/app/libs/REDapp_Lib.jar:/app/libs/WTime.jar:/app/libs/hss-java.jar:${CLASSPATH} -CMD PYTHONPATH=. poetry run alembic upgrade head && poetry run uvicorn app.main:app --timeout-keep-alive 120 --host 0.0.0.0 --reload --port 8080 - diff --git a/api/Makefile b/api/Makefile deleted file mode 100644 index 4a5639b0a3..0000000000 --- a/api/Makefile +++ /dev/null @@ -1,210 +0,0 @@ -# If the VIRTUAL_ENV is specified, we can assume we're in a poetry shell, otherwise -# we need to execute "poetry run" -ifdef VIRTUAL_ENV -POETRY_RUN= -else -POETRY_RUN=poetry run -endif - -define run-api - # function to run api - ${1} uvicorn app.main:app --timeout-keep-alive 120 --host 0.0.0.0 --reload --port 8080; -endef - -define build-static - # function to build static content - cd ../web; npm run build -endef - -define run-env-canada-model - POSTGRES_HOST=localhost $(POETRY_RUN) python -m app.jobs.env_canada ${1} -endef - -define run-env-canada - ${call run-env-canada-model,GDPS} - ${call run-env-canada-model,HRDPS} - ${call run-env-canada-model,RDPS} -endef - -clean: - # delete python bytecode. - find . -name \*.pyc -delete - # clean out the static folder - leaving the placeholder alone. - find static ! -name 'placeholder.txt' ! -name 'static' -exec rm -rf {} + - -init: - # Create virtual environment. - poetry install; - # Create static content - ${call build-static} - -init-mac: - # Create virtual environment. - env LDFLAGS="-I/usr/local/opt/openssl@1.1/include -L/usr/local/opt/openssl@1.1/lib" poetry install - # Create static content - ${call build-static} - -test: - # Run tests - # useful params for pytest: - # -s show stdout - # -n numprocesses - PYTHONPYCACHEPREFIX=python_cache $(POETRY_RUN) pytest -n 3 -x app; - # ImportMismatchError? run: make clean - -test-verbose: - # Run tests with verbose output - $(POETRY_RUN) pytest app -n 3 -x -vv; - -test-coverage: - # run tests with coverate reports - $(POETRY_RUN) coverage run --source=app -m pytest; - $(POETRY_RUN) coverage report; - $(POETRY_RUN) coverage xml -o coverage-reports/coverage-report.xml; - # ImportMismatchError? run: make clean - -lint: - # Run lint. - $(POETRY_RUN) ruff app/*.py app/**/*.py; - -run-with-tests: - # Run the application in the virtual environment (after linting and testing). - # Not failing on lint or test - just output so developer knows. - -poetry run ruff app/*.py app/**/*.py; - -poetry run python -m pytest -x -n 3 app; - ${call run-api,$(POETRY_RUN)} - -run: - ${call run-api,$(POETRY_RUN)} - -run-env-canada: - ${call run-env-canada} - -run-env-canada-gdps: - ${call run-env-canada-model,GDPS} - -run-env-canada-hrdps: - ${call run-env-canada-model,HRDPS} - -run-env-canada-rdps: - ${call run-env-canada-model,RDPS} - -run-noon-forecasts: - $(POETRY_RUN) python -m app.jobs.noon_forecasts - -run-hourly-actuals: - $(POETRY_RUN) python -m app.jobs.hourly_actuals - -run-all-jobs: - # Run hourlies and actuals 1'st - very quick. - $(POETRY_RUN) python -m app.jobs.hourly_actuals - $(POETRY_RUN) python -m app.jobs.noon_forecasts - ${call run-env-canada} - $(POETRY_RUN) python -m app.c_haines.worker - -c-haines: - $(POETRY_RUN) python -m app.c_haines.worker - -model-pruner: - $(POETRY_RUN) python -m app.jobs.model_data_pruner - -fetch-database-partial: - $(POETRY_RUN) python scripts/copy_db_from_pod_to_local.py - -fetch-database-complete: - $(POETRY_RUN) python scripts/copy_db_from_pod_to_local.py --mode=complete - -fetch-database-machine-learning: - $(POETRY_RUN) python scripts/copy_db_from_pod_to_local.py --mode=ml - -restore-partial-database-local: - # Restore a partial database to local server. - # Set environment variable PGPASSWORD=mywpspassword if you want to skip typing password for authentication. - # Set environment variable WITH_WPSREAD if you want to grant rights for wpsread user. - MODE=native ./scripts/restore_db.sh - -restore-complete-database-local: - # Restore a complete database to local server. - MODE=native PARTIAL=False ./scripts/restore_db.sh - -restore-partial-database-docker: - # Restore a partial database to server in docker. - # Set environment variable PGPASSWORD=mywpspassword if you want to skip typing password for authentication. - # Set environment variable WITH_WPSREAD if you want to grant rights for wpsread user. - MODE=docker ./scripts/restore_db.sh - -notebook: - # Run jupyter notebooks. - POSTGRES_HOST=localhost PYTHONPATH=$(shell pwd) JUPYTER_PATH=$(shell pwd) poetry run jupyter notebook --ip 0.0.0.0 - -shell: - # Run shell in virtual environment shell. - poetry shell - -docker-build: - # Build dev docker images. - # Having issues? try: docker volume prune - # Still having issues? try: docker system prune - docker compose build - -docker-lint: - # Run linting in docker (dev instance). - ${call run-lint,docker-compose run --rm api} - -docker-test: - # Run tests in docker (dev instance). - # We use the dev instance, because the "production" version doesn't have - # a number of the development dependancies. - # Make sure that your docker pycache doesn't conflict with your local pycache. - docker compose run --rm api pytest -x -n 3 app - -docker-test-coverage: - # Run tests with coverage in docker (dev instance). - ${call run-test-coverage,docker-compose run --rm api} - -docker-shell: - # Shell into the dev container. - # docker run -it --env-file app/.env --entrypoint bash wps-api_api:latest - docker compose run --rm api bash - -docker-run: - # Run docker in dev mode. - docker compose up - -docker-shell-db: - # Shell into the db container - docker compose exec db psql -h db -U wps - -docker-redis: - # Start up a local Redis service within docker container - docker compose up redis - -docker-run-env-canada: - # Run a python script to download model data from Env Canada on docker - # Needs to run "make docker-run" first - docker compose exec api python -m app.weather_models.env_canada GDPS - docker compose exec api python -m app.weather_models.env_canada HRDPS - docker compose exec api python -m app.weather_models.env_canada RDPS - -docker-run-noon-forecasts: - # Run a python script to download forecast data from BC Wild Fire on docker - # Needs to run "make docker-run" first - docker compose exec api python -m app.jobs.noon_forecasts - -docker-run-hourly-actuals: - # Run a python script to download hourly actuals from BC Wild Fire on docker. - # Needs to run "make docker-run" first - docker compose exec api python -m app.jobs.hourly_actuals - -database-upgrade: - PYTHONPATH=. $(POETRY_RUN) alembic upgrade head - -database-downgrade: - PYTHONPATH=. $(POETRY_RUN) alembic downgrade -1 - -docker-database-upgrade: - docker compose exec -e PYTHONPATH=. api alembic upgrade head - -nats: - # Run nats with jetstream - docker run -p 4222:4222 -ti nats:latest -js \ No newline at end of file diff --git a/api/README.md b/api/README.md deleted file mode 100644 index 20a1a612c4..0000000000 --- a/api/README.md +++ /dev/null @@ -1,53 +0,0 @@ -## Getting Started - -You will need an environment file. See: `.env.example`. Contact current maintainers for current variable settings. - -### Installing - -- Automated (mac only): - - Run `setup/mac.sh` in parent folder - - Follow [manual setup](../docs/MANUAL_SETUP.md) for database setup notes as of Nov 2024. - - Follow [lima setup steps](../setup/LIMA.md) - - then add run `eval "$(pyenv init -)"` in your current shell and add it to your `rc` or `zshrc` file - - then run `poetry-workspaces-setup.sh` from the root of the wps project - - Follow [vsc setup steps](../setup/VSC.md) -- Manual (linux): See [manual setup](../docs/MANUAL_SETUP.md). - Note: you may want to alias `python3` as `python` in your profile - -### Running - -Assumes: - -- Installation section above is completed -- `.env` is correctly configured in the project root - -Run API with: - -```bash -make run -``` - -### Testing - -Code must pass all unit tests. - -```bash -make test -``` - -### Troubleshooting - -**Poetry can't install rpy2** -Error: `ld: library not found for -lpcre2-8` - -pcre2 should be installed after running [mac.sh](../setup/mac.sh). 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-# Run migrations -PYTHONPATH=. poetry run alembic upgrade head diff --git a/api/pyproject.toml b/api/pyproject.toml deleted file mode 100644 index fd322db4a4..0000000000 --- a/api/pyproject.toml +++ /dev/null @@ -1,69 +0,0 @@ -[tool.poetry] -name = "wps-api" -version = "0.1.0" -description = "Wildfire Predictive Services Unit API" -authors = ["Sybrand Strauss "] -package-mode = false - -[tool.poetry.dependencies] -python = ">=3.12.3,<4.0" -fastapi = "^0" -requests = "^2" -aiodns = "^3" -aiohttp = "^3" -pandas = "^2" -pyjwt = "^2" -cryptography = "^46.0.0" -sqlalchemy = "^2" -psycopg2 = "^2" -postgres = "^4" -python-decouple = "^3" -uvicorn = "^0" -alembic = "^1" -requests_ntlm = "^1" -scipy = "^1" -geoalchemy2 = "^0" -aiofiles = "^25.0.0" -jinja2 = "^3" -numpy = "2.1" -aiobotocore = "^2.0.0" -rpy2 = "^3.4.5" -redis = "^7.0.0" -pyjnius = "^1.3.0" -hiredis = "^3.0.0" -pdfkit = "^1.0.0" -asyncpg = "^0.30.0" -python-multipart = "^0.0.18" -gunicorn = "^23.0.0" -setuptools = "^80.0.0" -nats-py = "^2.1.7" -affine = "^2.3.1" -scikit-learn = "^1.1.3" -httpx = "^0.27.0" -orjson = "^3.9.0" -greenlet = "^3.0.0" -sentry-sdk = { extras = ["fastapi"], version = "^2.0.1" } -numba = "0.61" -cffdrs = { git = "https://github.com/cffdrs/cffdrs_py.git", rev = "c760307" } -geopandas = "^1.0.1" -shapely = "^2.0.5" -wps-shared = { path = "../wps_shared" } - -[tool.poetry.group.dev.dependencies] -pytest = "^9.0.0" -jupyter = "^1" -notebook = "^7.0.7" -coverage = "^7.6.4" -pycodestyle = "^2" -autopep8 = "^2" -matplotlib = "^3" -pytest-xdist = "^3" -pytest-mock = "^3" -rope = "^1" -pytest-watch = "^4.2.0" -ruff = "^0.11.5" -pytest-cov = "^7.0.0" - -[build-system] -requires = ["poetry>=1.1.11"] -build-backend = "poetry.masonry.api" diff --git a/api/scripts/copy_db_from_pod_to_local.py b/api/scripts/copy_db_from_pod_to_local.py deleted file mode 100644 index 93c4201ae2..0000000000 --- a/api/scripts/copy_db_from_pod_to_local.py +++ /dev/null @@ -1,254 +0,0 @@ -""" Module for getting database dump. -""" -from enum import Enum -import subprocess -import io -import argparse -from typing import List - - -class CopyException(Exception): - """ Custom exception for errors """ - - -class Mode(str, Enum): - """ Different copy modes """ - partial = 'partial' - complete = 'complete' - machine_learning = 'ml' - - -def oc_n_project(project: str) -> List: - """ Construct['oc', '-n', ''] """ - return ['oc', '-n', project] - - -def oc_rsh(project: str, pod: str) -> List: - """ Construct['oc', '-n', '', 'rsh', ''] """ - return [*oc_n_project(project), 'rsh', pod] - - -def get_first_project() -> str: - """ Return the first project in the list """ - result = subprocess.run(['oc', 'get', 'projects', '-o', 'name'], - stdout=subprocess.PIPE, check=True, text=True) - project = io.StringIO(result.stdout).readline() - return project[project.rindex('/') + 1:-1] - - -def list_pods(project: str) -> None: - """ print list of pods to screen """ - result = subprocess.run([*oc_n_project(project), 'get', 'pods'], - stdout=subprocess.PIPE, check=True, text=True) - print(result.stdout) - - -def list_projects() -> None: - """ Print list of projects to screen """ - result = subprocess.run(['oc', 'get', 'projects'], stdout=subprocess.PIPE, check=True, text=True) - print(result.stdout) - - -def list_cluster_members(project: str, pod: str) -> None: - """ List cluster members available """ - print("fetching cluster members...") - result = subprocess.run([*oc_rsh(project, pod), 'patronictl', 'list'], - stdout=subprocess.PIPE, check=True, text=True) - lines = io.StringIO(result.stdout) - pod_is_leader = False - for line in lines: - print(line[:-1]) - if pod in line and 'Leader' in line: - pod_is_leader = True - if pod in line and 'Replica' in line: - print('The pod you selected is a Replica. This is good.') - if pod_is_leader: - message = 'Please don\'t use the Leader - choose a different pod.' - print(message) - raise CopyException(message) - - -def list_databases(project: str, pod: str) -> None: - """ List databases on pod """ - print("fetching list of databases...") - result = subprocess.run([*oc_rsh(project, pod), 'psql'], input='\\l', - stdout=subprocess.PIPE, check=True, text=True, timeout=20) - print(result.stdout) - - -def create_lock_file(project: str, pod: str, database: str) -> None: - """ Attempt to create a lock file, will fail if already exists """ - try: - lock_file = '/tmp/{}.lock'.format(database) - print('creating lock file: {}'.format(lock_file)) - subprocess.run([*oc_rsh(project, pod), 'mkdir', lock_file], - stdout=subprocess.PIPE, check=True, text=True) - except subprocess.CalledProcessError: - print('failed to create lock {}:{} - another copy may be in progress'.format(pod, lock_file)) - raise - - -def delete_lock_file(project: str, pod: str, database: str) -> None: - """ Attempt to delete lockfile """ - lock_file = '/tmp/{}.lock'.format(database) - print('deleting lock {}:{}...'.format(pod, lock_file)) - result = subprocess.run([*oc_rsh(project, pod), 'rmdir', lock_file], - stdout=subprocess.PIPE, check=True, text=True) - print(result.stdout) - - -def dump_database(project: str, pod: str, database: str, mode: Mode, num_days: int) -> List[str]: - """ Dump database to file """ - print('running pg_dump...') - files = ['/tmp/dump_db.tar', ] if mode != Mode.machine_learning else [] - if mode == Mode.partial: - print('(partial dump)') - result = subprocess.run([*oc_rsh(project, pod), 'pg_dump', '--file=/tmp/dump_db.tar', - '--clean', '-Ft', database, - '--exclude-table-data=model_run_grid_subset_predictions', - '--exclude-table-data=weather_station_model_predictions'], - stdout=subprocess.PIPE, check=True, text=True) - print(result.stdout) - - elif mode == Mode.complete: - print('(complete dump)') - result = subprocess.run([*oc_rsh(project, pod), 'pg_dump', '--file=/tmp/dump_db.tar', - '--clean', '-Ft', database], - stdout=subprocess.PIPE, check=True, text=True) - print(result.stdout) - - process = subprocess.Popen([*oc_rsh(project, pod)], stdin=subprocess.PIPE, - stdout=subprocess.PIPE, stderr=subprocess.PIPE, text=True) - if mode == Mode.partial: - # partial model data - tables = ['model_run_grid_subset_predictions', 'weather_station_model_predictions'] - for table in tables: - csv_file = '/tmp/{}.csv'.format(table) - files.append(csv_file) - sql_command = ('psql {database} -c "\\copy (SELECT * FROM {table} WHERE ' - 'prediction_timestamp > current_date -5) to \'{csv_file}\' with csv"\n').format( - database=database, table=table, csv_file=csv_file) - print('run: {}'.format(sql_command)) - process.stdin.write(sql_command) - process.stdin.flush() - elif mode == Mode.machine_learning: - print('(dump weather model data for linear regression ML)') - tables_dict = {'prediction_model_run_timestamps': {'col_name': 'prediction_run_timestamp', 'date_offset': num_days + 11}, - 'model_run_grid_subset_predictions': {'col_name': 'prediction_timestamp', 'date_offset': num_days}, - 'weather_station_model_predictions': {'col_name': 'prediction_timestamp', 'date_offset': num_days}} - for table_name, values in tables_dict.items(): - csv_file = '/tmp/{}.csv'.format(table_name) - files.append(csv_file) - sql_command = ('psql {database} -c "\\copy (SELECT * FROM {table} WHERE ' - '{col_name} > current_date - {max_days_to_learn}) to ' - '\'{csv_file}\' with CSV"\n').format(database=database, table=table_name, csv_file=csv_file, - max_days_to_learn=values['date_offset'], col_name=values['col_name']) - print('run: {}'.format(sql_command)) - process.stdin.write(sql_command) - process.stdin.flush() - - for filename in files: - print('zip: {}'.format(filename)) - process.stdin.write('gzip {}\n'.format(filename)) - process.stdin.flush() - - print('waiting for process to complete...') - out, errs = process.communicate() - print(out) - print(errs) - return files - - -def copy_files_to_local(project: str, pod: str, files: List[str]) -> None: - """ Copy compressed files to local """ - for filename in files: - print('copying {}.gz...'.format(filename)) - result = subprocess.run([*oc_n_project(project), 'cp', '{}:{}.gz'.format(pod, filename), - './{}.gz'.format(filename)], - stdout=subprocess.PIPE, check=True, text=True) - print(result.stdout) - - -def delete_remote_files(project: str, pod: str, files: List[str]) -> None: - """ Delete all the files we made from the server(cleanup) """ - process = subprocess.Popen([*oc_rsh(project, pod)], stdin=subprocess.PIPE, - stdout=subprocess.PIPE, stderr=subprocess.PIPE, text=True) - for filename in files: - print('deleting {}:{}.gz'.format(pod, filename)) - process.stdin.write('rm {}.gz\n'.format(filename)) - process.stdin.flush() - - print('waiting for process to complete...') - out, errs = process.communicate() - print(out) - print(errs) - - -def unzip_locally(files: List[str]) -> None: - """ Unzip all the files locally """ - print('unzipping files locally...') - for filename in files: - print('unzip .{}.gz'.format(filename)) - result = subprocess.run(['gunzip', '.{}.gz'.format(filename)], - stdout=subprocess.PIPE, check=True, text=True) - print(result.stdout) - - -def get_project() -> str: - """ Get project user is going to use """ - list_projects() - project = input("enter project name: ") - if not project: - project = get_first_project() - print(project) - return project - - -def get_pod(project) -> str: - """ Get name of the pod """ - list_pods(project) - pod = input("enter pod name: ") - if not pod: - raise CopyException("you have to specify a pod name!") - list_cluster_members(project, pod) - return pod - - -def get_database(project, pod) -> str: - """ Get the name of the database """ - list_databases(project, pod) - database = input("enter name of database: ") - if not database: - raise CopyException("you have to specify a database!") - return database - - -def main(): - """ - Entry points - assumes you have openshift command line tools installed and are logged in . - """ - parser = argparse.ArgumentParser( - description='Download complete or partial database dump from a pod in an openshift cluster, or download weather model data only') - parser.add_argument('-m', '--mode', default='partial', - help='Download complete, partial, or ml (machine learning) (default: partial)') - parser.add_argument('-d', '--days', default='19', type=int, - help='Number of days in past to fetch weather model data for (default: 19') - args = parser.parse_args() - mode = Mode(args.mode) - num_days = args.days - - project = get_project() - pod = get_pod(project) - database = get_database(project, pod) - create_lock_file(project, pod, database) - try: - files = dump_database(project, pod, database, mode, num_days) - copy_files_to_local(project, pod, files) - delete_remote_files(project, pod, files) - finally: - delete_lock_file(project, pod, database) - unzip_locally(files) - - -if __name__ == '__main__': - main() diff --git a/api/scripts/percentile_calculator/calculate_percentile_offline.py b/api/scripts/percentile_calculator/calculate_percentile_offline.py deleted file mode 100644 index 515841ec55..0000000000 --- a/api/scripts/percentile_calculator/calculate_percentile_offline.py +++ /dev/null @@ -1,169 +0,0 @@ -""" -This script can be used to update data for the 90th Percentile Calculator from data stored in the dev s3 bucket. -It will updates both the weather_stations.json and the 90th percentile values by station json files. - -- Change the RECENT_YEAR to match the most recent data dump on s3 (s3 folders named by year) - -""" -import os -import json -import pandas as pd -import asyncio -from scripts.percentile_calculator.station_csv_to_json import generate_station_json -from scripts.percentile_calculator.s3_to_dataframe import load_all_csv_to_dataframe, get_csv_list_from_s3, filter_wx_and_station_csv - - -RECENT_YEAR = 2023 # the most recent year that has the core fire season recorded. -RANGES = [(RECENT_YEAR - 29, RECENT_YEAR), (RECENT_YEAR - 19, RECENT_YEAR), - (RECENT_YEAR - 9, RECENT_YEAR)] -PERCENTILE = 0.9 -NUMBER_OF_DECIMAL_POINT = 5 # for FWI values - -async def main(): - """ The main entrypoint for pre-generating json daily summaries. """ - all_csv_from_s3 = await get_csv_list_from_s3(RECENT_YEAR) - wx_csv_list, station_csv_list = filter_wx_and_station_csv(all_csv_from_s3) - station_json = await generate_station_json(station_csv_list) - - print('Loading all historical weather csv to dataframes from s3') - df = load_all_csv_to_dataframe(wx_csv_list, filter_dailies=True) - - print('Split dates into multiple columns...') - split_dates_into_multiple_cols(df) - - stations = get_stations(station_json) - - for start_year, end_year in RANGES: - year_range = list(range(start_year, end_year + 1)) - year_df = grab_data_in_particular_year_range(df, year_range) - - folder_name = get_output_foldername(start_year, end_year) - - for station in stations: - station_code = int(station['code']) - station_df = year_df[year_df['STATION_CODE'] == station_code] - - if station_df.empty: - print('Data not available for {} creating empty summary...'.format( - station_code)) - empty_summary = create_null_summary(station, year_range) - dump_summary_in_json(folder_name, station_code, empty_summary) - continue - - season = get_core_fire_season(station) - station_df = remove_data_outside_fire_season(station_df, season) - percentiles = calculate_percentile(station_df, PERCENTILE) - - years = get_years_for_valid_fwi_values(station_df) - - summary = { - 'ffmc': percentiles['ffmc'], - 'isi': percentiles['isi'], - 'bui': percentiles['bui'], - 'years': years, - 'station': station - } - - dump_summary_in_json(folder_name, station_code, summary) - - print('--- Done creating data under {} folder ---'.format(folder_name)) - -def create_null_summary(station, year_range: list): - """ Create an empty summary """ - return { - 'ffmc': None, - 'isi': None, - 'bui': None, - 'years': year_range, - 'station': station - } - - -def dump_summary_in_json(folder_name: str, station_code: int, summary: dict): - """ Create a json file with the given summary """ - filename = '{}/{}.json'.format(folder_name, station_code) - with open(filename, 'w+') as json_file: - json.dump(summary, json_file, indent=4, allow_nan=False) - - -def get_output_foldername(start_year: int, end_year: int) -> str: - """ Create an output folder and return its name """ - folder_name = "app/data/{}-{}".format(start_year, end_year) - if not os.path.exists(folder_name): - os.mkdir(folder_name) - return folder_name - - -def get_stations(station_json_path: str) -> list: - """ Load stations from json """ - with open(station_json_path) as file_handle: - return json.load(file_handle)['weather_stations'] - - -def get_core_fire_season(station: dict) -> dict: - """ Read the core fire season and return them in dict """ - return { - 'start_month': int(station['core_season']['start_month']), - 'start_day': int(station['core_season']['start_day']), - 'end_month': int(station['core_season']['end_month']), - 'end_day': int(station['core_season']['end_day']), - } - - -def split_dates_into_multiple_cols(df: pd.DataFrame): - """ Turn weather_date into datetime type then create 3 columns, year, month, and day """ - df['DATE_TIME'] = df['DATE_TIME'].apply(str) - df['year'] = df['DATE_TIME'].apply(lambda x: int(x[:4])) - df['month'] = df['DATE_TIME'].apply(lambda x: int(x[4:6])) - df['day'] = df['DATE_TIME'].apply(lambda x: int(x[6:])) - - -def grab_data_in_particular_year_range(df:pd.DataFrame, year_range: list) -> pd.DataFrame: - """ Grab data recorded between start_year and end_year. """ - return df[df['year'].isin(year_range)] - - -def remove_data_outside_fire_season(df: pd.DataFrame, season: dict): - """ Remove data recorded outside of fire season. """ - outside_month = (df['month'] < season['start_month']) | ( - df['month'] > season['end_month']) - df = df.loc[~outside_month] - - before_start = ((df['month'] == season['start_month']) & - (df['day'] < season['start_day'])) - df = df.loc[~before_start] - - after_end = ((df['month'] == season['end_month']) & - (df['day'] > season['end_day'])) - df = df.loc[~after_end] - - return df - - -def calculate_percentile(df: pd.DataFrame, percentile: float) -> dict: - """ Calculate percentile """ - ffmc = df[df['FINE_FUEL_MOISTURE_CODE'].notnull()]['FINE_FUEL_MOISTURE_CODE'].quantile(percentile) - bui = df[df['BUILDUP_INDEX'].notnull()]['BUILDUP_INDEX'].quantile(percentile) - isi = df[df['INITIAL_SPREAD_INDEX'].notnull()]['INITIAL_SPREAD_INDEX'].quantile(percentile) - - ffmc = round(ffmc, NUMBER_OF_DECIMAL_POINT) if not pd.isna(ffmc) else None - bui = round(bui, NUMBER_OF_DECIMAL_POINT) if not pd.isna(bui) else None - isi = round(isi, NUMBER_OF_DECIMAL_POINT) if not pd.isna(isi) else None - - return {'ffmc': ffmc, 'bui': bui, 'isi': isi} - - -def get_years_for_valid_fwi_values(df: pd.DataFrame) -> list: - """ List each year that is sorted """ - ffmc_data_years = df[df['FINE_FUEL_MOISTURE_CODE'].notnull()].year.unique().tolist() - bui_data_years = df[df['BUILDUP_INDEX'].notnull()].year.unique().tolist() - isi_data_years = df[df['INITIAL_SPREAD_INDEX'].notnull()].year.unique().tolist() - # Combine them and remove duplicates - data_years = list(set(ffmc_data_years) | set( - bui_data_years) | set(isi_data_years)) - data_years.sort() - - return data_years - -if __name__ == '__main__': - asyncio.run(main()) diff --git a/api/start.sh b/api/start.sh deleted file mode 100755 index 1ea0b8b18e..0000000000 --- a/api/start.sh +++ /dev/null @@ -1,9 +0,0 @@ -#! /usr/bin/env sh -set -e - -# run pre-start scripts -./prestart.sh -# set some defaults -GUNICORN_WORKERS="${GUNICORN_WORKERS:-4}" -# start the server -GUNICORN_CMD_ARGS="--max-requests 50 --max-requests-jitter 50" poetry run gunicorn app.main:app --timeout 200 --workers $GUNICORN_WORKERS --worker-class uvicorn.workers.UvicornWorker --bind=0.0.0.0:8080 diff --git a/api/static/placeholder.txt b/api/static/placeholder.txt deleted file mode 100644 index 1024f67e85..0000000000 --- a/api/static/placeholder.txt +++ /dev/null @@ -1 +0,0 @@ -this placeholder exists in order to ensure that the static folder is created on checkout - without it, api tests fail. \ No newline at end of file diff --git a/api/.python-version b/backend/.python-version similarity index 100% rename from api/.python-version rename to backend/.python-version diff --git a/backend/README.md b/backend/README.md new file mode 100644 index 0000000000..abefb15575 --- /dev/null +++ b/backend/README.md @@ -0,0 +1,97 @@ +# WPS Backend + +Python workspace containing all backend packages managed by uv. + +## Structure + +``` +backend/ +├── packages/ +│ ├── wps-api/ # Main API application +│ ├── wps-jobs/ # Background jobs +│ └── wps-shared/ # Shared utilities +├── .venv/ # Single virtual environment +├── pyproject.toml # Workspace configuration +└── uv.lock # Dependency lock file +``` + +## Getting Started + +You will need an environment file. See: `.env.example`. Contact current maintainers for current variable settings. + +### Installing + +- Automated (mac only): + - Run `setup/mac.sh` in parent folder + - Follow [manual setup](../docs/MANUAL_SETUP.md) for database setup notes as of Nov 2024. + - Follow [vsc setup steps](../setup/VSC.md) +- Manual (linux): See [manual setup](../docs/MANUAL_SETUP.md). + Note: you may want to alias `python3` as `python` in your profile + +### Setup + +- Installation section above is completed +- `.env` is correctly configured in the project root +- this dynamic library is set in the env: `DYLD_LIBRARY_PATH=/Library/Frameworks/R.framework/Resources/lib` + +### Install Dependencies + +```bash +cd wps/backend +uv sync --all-extras +``` + +## Running Tests + +```bash +# Run all tests +uv run pytest + +# Run tests for a specific package +uv run pytest packages/wps-api/src +uv run pytest packages/wps-jobs/src +uv run pytest packages/wps-shared/src + +# Run a specific test file +uv run pytest packages/wps-shared/src/wps_shared/tests/test_fuel_raster.py +``` + +## VSCode Integration + +The workspace is configured for VSCode with: + +- Python interpreter: `backend/.venv/bin/python` +- Test discovery working directory: `backend/` +- Pytest configuration in `backend/pytest.ini` + +After setup, tests should appear in the VSCode Test Explorer automatically. + +## Package Management + +### Add a dependency to a package + +```bash +# Edit the package's pyproject.toml, then: +uv lock +uv sync +``` + +### Add a new package to the workspace + +1. Create directory in `packages/` +2. Add `pyproject.toml` +3. It will be auto-discovered (using `members = ["packages/*"]`) + +## Docker Images + +Each package can be built independently: + +```bash +# API image +docker build -f Dockerfile -t wps-api . + +# Jobs image +docker build -f Dockerfile.jobs -t wps-jobs . +``` + +The `--package` flag in Dockerfiles ensures only needed dependencies are installed. diff --git a/backend/packages/wps-api/Dockerfile b/backend/packages/wps-api/Dockerfile new file mode 100644 index 0000000000..44fd80563d --- /dev/null +++ b/backend/packages/wps-api/Dockerfile @@ -0,0 +1,68 @@ +# NOTE: +# This Dockerfile is for local development only! + +FROM ubuntu:22.04 + +ARG USERNAME=worker +ARG USER_UID=1000 +ARG USER_GID=$USER_UID + +ENV DEBIAN_FRONTEND=noninteractive + +RUN apt-get -y update +RUN apt-get -y install unixodbc-dev libgdal-dev libudunits2-dev + +# Install R +RUN apt-get update --fix-missing && apt-get -y install r-base + +# Install cffdrs +RUN R -e "install.packages('cffdrs')" + +# Install other dependencies +RUN apt-get -y install git build-essential python3 python3-dev python3-pip curl vim + +# Install JDK +RUN apt-get -y install default-jdk python-is-python3 + +# Install uv +COPY --from=ghcr.io/astral-sh/uv:0.9.11 /uv /uvx /bin/ + +RUN groupadd --gid $USER_GID $USERNAME \ + && useradd --uid $USER_UID --gid $USER_GID -m $USERNAME + +RUN mkdir /app && chown worker /app +USER worker +ENV PATH="/home/worker/.local/bin:${PATH}" +WORKDIR /app + +# Copy workspace configuration (build context is backend dir) +COPY pyproject.toml /app/ +COPY uv.lock /app/ +COPY packages/wps-api/pyproject.toml /app/packages/wps-api/ +COPY packages/wps-api/README.md /app/packages/wps-api/ +COPY packages/wps-shared/pyproject.toml /app/packages/wps-shared/ +COPY packages/wps-shared/README.md /app/packages/wps-shared/ +COPY packages/wps-shared/src /app/packages/wps-shared/src +RUN chmod -R a-w /app/pyproject.toml /app/uv.lock /app/packages/wps-api /app/packages/wps-shared + +# Install dependencies +RUN uv sync --package wps-api +RUN uv pip install pygdal==3.4.1.10 + +ENV PATH="/app/.venv/bin:${PATH}" +ENV VIRTUAL_ENV="/app/.venv" + +COPY packages/wps-api/src/app /app/app +RUN mkdir /app/advisory +COPY packages/wps-api/advisory /app/advisory +RUN mkdir /app/libs +COPY packages/wps-api/libs /app/libs +RUN chmod -R a-w /app/advisory /app/libs + +USER 0 +RUN chmod a+w $(find /app/app -type d) +USER worker + +EXPOSE 8080 +ENV CLASSPATH=/app/libs/REDapp_Lib.jar:/app/libs/WTime.jar:/app/libs/hss-java.jar:${CLASSPATH} +CMD PYTHONPATH=. alembic upgrade head && uvicorn app.main:app --timeout-keep-alive 120 --host 0.0.0.0 --reload --port 8080 diff --git a/api/HFI_spreadsheet.md b/backend/packages/wps-api/HFI_spreadsheet.md similarity index 100% rename from api/HFI_spreadsheet.md rename to backend/packages/wps-api/HFI_spreadsheet.md diff --git a/backend/packages/wps-api/README.md b/backend/packages/wps-api/README.md new file mode 100644 index 0000000000..d004802138 --- /dev/null +++ b/backend/packages/wps-api/README.md @@ -0,0 +1,30 @@ +Assumes installation and setup is done in [backend/README.md](../../../backend/README.md) + +Run API with: + +```bash +uv run --package wps-api python -m app.main +``` + +### Testing + +Code must pass all unit tests. + +```bash +uv run pytest +``` + +### Troubleshooting + +**Poetry can't install rpy2** +Error: `ld: library not found for -lpcre2-8` + +pcre2 should be installed after running [mac.sh](../../../setup/mac.sh). This can be verified by running + +```bash +brew list pcre2 +``` + +```bash +export LIBRARY_PATH="/opt/homebrew/Cellar/pcre2/10.42/lib/:$LIBRARY_PATH" +``` diff --git a/api/advisory/db/database/__init__.py b/backend/packages/wps-api/advisory/db/database/__init__.py similarity index 100% rename from api/advisory/db/database/__init__.py rename to backend/packages/wps-api/advisory/db/database/__init__.py diff --git a/api/advisory/db/database/tileserver_advisory_setup.sql b/backend/packages/wps-api/advisory/db/database/tileserver_advisory_setup.sql similarity index 100% rename from api/advisory/db/database/tileserver_advisory_setup.sql rename to backend/packages/wps-api/advisory/db/database/tileserver_advisory_setup.sql diff --git a/api/alembic.ini b/backend/packages/wps-api/alembic.ini similarity index 100% rename from api/alembic.ini rename to backend/packages/wps-api/alembic.ini diff --git a/api/alembic/README b/backend/packages/wps-api/alembic/README similarity index 100% rename from api/alembic/README rename to backend/packages/wps-api/alembic/README diff --git a/api/alembic/data/zones/zone_481.geojson b/backend/packages/wps-api/alembic/data/zones/zone_481.geojson similarity index 100% rename from api/alembic/data/zones/zone_481.geojson rename to backend/packages/wps-api/alembic/data/zones/zone_481.geojson diff --git a/api/alembic/data/zones/zone_482.geojson b/backend/packages/wps-api/alembic/data/zones/zone_482.geojson similarity index 100% rename from api/alembic/data/zones/zone_482.geojson rename to backend/packages/wps-api/alembic/data/zones/zone_482.geojson diff --git a/api/alembic/data/zones/zone_483.geojson b/backend/packages/wps-api/alembic/data/zones/zone_483.geojson similarity index 100% rename from api/alembic/data/zones/zone_483.geojson rename to backend/packages/wps-api/alembic/data/zones/zone_483.geojson diff --git a/api/alembic/data/zones/zone_484.geojson b/backend/packages/wps-api/alembic/data/zones/zone_484.geojson similarity index 100% rename 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backend/packages/wps-api/libs/WTime.jar diff --git a/api/libs/hss-java.jar b/backend/packages/wps-api/libs/hss-java.jar similarity index 100% rename from api/libs/hss-java.jar rename to backend/packages/wps-api/libs/hss-java.jar diff --git a/backend/packages/wps-api/prestart.sh b/backend/packages/wps-api/prestart.sh new file mode 100755 index 0000000000..26101b0de5 --- /dev/null +++ b/backend/packages/wps-api/prestart.sh @@ -0,0 +1,4 @@ +#! /usr/bin/env bash + +# Run migrations +PYTHONPATH=. alembic upgrade head diff --git a/backend/packages/wps-api/pyproject.toml b/backend/packages/wps-api/pyproject.toml new file mode 100644 index 0000000000..e0336b80cd --- /dev/null +++ b/backend/packages/wps-api/pyproject.toml @@ -0,0 +1,75 @@ +[project] +name = "wps-api" +version = "0.1.0" +description = "Wildfire Predictive Services Unit API" +authors = [{ name = "Sybrand Strauss", email = "sybrand.strauss@gov.bc.ca" }] +requires-python = ">=3.12.3,<4.0" +dependencies = [ + "wps-shared", + "fastapi>=0,<1", + "requests>=2,<3", + "aiodns>=3,<4", + "aiohttp>=3,<4", + "pandas>=2,<3", + "pyjwt>=2,<3", + "cryptography>=46.0.0,<47", + "sqlalchemy>=2,<3", + "psycopg2>=2,<3", + "postgres>=4,<5", + "python-decouple>=3,<4", + "uvicorn>=0,<1", + "alembic>=1,<2", + "requests-ntlm>=1,<2", + "scipy>=1,<2", + "geoalchemy2>=0,<1", + "aiofiles>=25.0.0,<26", + "jinja2>=3,<4", + "numpy==2.1.*", + "aiobotocore==2.15.1", + "rpy2>=3.4.5,<4", + "redis>=7.0.0,<8", + "pyjnius>=1.3.0,<2", + "hiredis>=3.0.0,<4", + "pdfkit>=1.0.0,<2", + "asyncpg>=0.30.0,<1", + "python-multipart>=0.0.18,<1", + "gunicorn>=23.0.0,<24", + "setuptools>=80.0.0,<81", + "nats-py>=2.1.7,<3", + "affine>=2.3.1,<3", + "scikit-learn>=1.1.3,<2", + "httpx>=0.27.0,<1", + "orjson>=3.9.0,<4", + "greenlet>=3.0.0,<4", + "sentry-sdk[fastapi]>=2.0.1,<3", + "numba==0.61.*", + "cffdrs", + "geopandas>=1.0.1,<2", + "shapely>=2.0.5,<3", + "gdal==3.9.2", +] + +[project.optional-dependencies] +dev = [ + "jupyter>=1,<2", + "notebook>=7.0.7,<8", + "pycodestyle>=2,<3", + "autopep8>=2,<3", + "matplotlib>=3,<4", + "rope>=1,<2", + "pytest-watch>=4.2.0,<5", +] + +[tool.uv.sources] +wps-shared = { workspace = true } +cffdrs = { git = "https://github.com/cffdrs/cffdrs_py.git", rev = "c760307" } + +[tool.hatch.metadata] +allow-direct-references = true + +[build-system] +requires = ["hatchling"] +build-backend = "hatchling.build" + +[tool.hatch.build.targets.wheel] +packages = ["src/app"] diff --git a/api/app/__init__.py b/backend/packages/wps-api/src/app/__init__.py similarity index 100% rename from api/app/__init__.py rename to backend/packages/wps-api/src/app/__init__.py diff --git a/api/app/auto_spatial_advisory/__init__.py b/backend/packages/wps-api/src/app/auto_spatial_advisory/__init__.py similarity index 100% rename from api/app/auto_spatial_advisory/__init__.py rename to backend/packages/wps-api/src/app/auto_spatial_advisory/__init__.py diff --git a/api/app/auto_spatial_advisory/calculate_combustible_land_area.py 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backend/packages/wps-api/src/app/auto_spatial_advisory/hfi_percent_conifer.py diff --git a/api/app/auto_spatial_advisory/local/__init__.py b/backend/packages/wps-api/src/app/auto_spatial_advisory/local/__init__.py similarity index 100% rename from api/app/auto_spatial_advisory/local/__init__.py rename to backend/packages/wps-api/src/app/auto_spatial_advisory/local/__init__.py diff --git a/api/app/auto_spatial_advisory/local/generate_classified_tpi.py b/backend/packages/wps-api/src/app/auto_spatial_advisory/local/generate_classified_tpi.py similarity index 100% rename from api/app/auto_spatial_advisory/local/generate_classified_tpi.py rename to backend/packages/wps-api/src/app/auto_spatial_advisory/local/generate_classified_tpi.py diff --git a/api/app/auto_spatial_advisory/local/generate_fuel_masked_tpi.py b/backend/packages/wps-api/src/app/auto_spatial_advisory/local/generate_fuel_masked_tpi.py similarity index 100% rename from api/app/auto_spatial_advisory/local/generate_fuel_masked_tpi.py rename to backend/packages/wps-api/src/app/auto_spatial_advisory/local/generate_fuel_masked_tpi.py diff --git a/api/app/auto_spatial_advisory/local/import_fire_zones.py b/backend/packages/wps-api/src/app/auto_spatial_advisory/local/import_fire_zones.py similarity index 100% rename from api/app/auto_spatial_advisory/local/import_fire_zones.py rename to backend/packages/wps-api/src/app/auto_spatial_advisory/local/import_fire_zones.py diff --git a/api/app/auto_spatial_advisory/local/process_hfi_local.py b/backend/packages/wps-api/src/app/auto_spatial_advisory/local/process_hfi_local.py similarity index 100% rename from api/app/auto_spatial_advisory/local/process_hfi_local.py rename to backend/packages/wps-api/src/app/auto_spatial_advisory/local/process_hfi_local.py diff --git a/api/app/auto_spatial_advisory/local/process_stats_local.py b/backend/packages/wps-api/src/app/auto_spatial_advisory/local/process_stats_local.py similarity index 100% rename from api/app/auto_spatial_advisory/local/process_stats_local.py rename to backend/packages/wps-api/src/app/auto_spatial_advisory/local/process_stats_local.py diff --git a/api/app/auto_spatial_advisory/nats_config.py b/backend/packages/wps-api/src/app/auto_spatial_advisory/nats_config.py similarity index 100% rename from api/app/auto_spatial_advisory/nats_config.py rename to backend/packages/wps-api/src/app/auto_spatial_advisory/nats_config.py diff --git a/api/app/auto_spatial_advisory/nats_consumer.py b/backend/packages/wps-api/src/app/auto_spatial_advisory/nats_consumer.py similarity index 99% rename from api/app/auto_spatial_advisory/nats_consumer.py rename to backend/packages/wps-api/src/app/auto_spatial_advisory/nats_consumer.py index 51420ffedf..22cbd80b2f 100644 --- a/api/app/auto_spatial_advisory/nats_consumer.py +++ b/backend/packages/wps-api/src/app/auto_spatial_advisory/nats_consumer.py @@ -4,7 +4,6 @@ import asyncio import json -import datetime from datetime import datetime import logging from typing import List diff --git a/api/app/auto_spatial_advisory/process_elevation_hfi.py b/backend/packages/wps-api/src/app/auto_spatial_advisory/process_elevation_hfi.py similarity index 100% rename from api/app/auto_spatial_advisory/process_elevation_hfi.py rename to backend/packages/wps-api/src/app/auto_spatial_advisory/process_elevation_hfi.py diff --git a/api/app/auto_spatial_advisory/process_fuel_type_area.py b/backend/packages/wps-api/src/app/auto_spatial_advisory/process_fuel_type_area.py similarity index 100% rename from api/app/auto_spatial_advisory/process_fuel_type_area.py rename to backend/packages/wps-api/src/app/auto_spatial_advisory/process_fuel_type_area.py diff --git a/api/app/auto_spatial_advisory/process_hfi.py b/backend/packages/wps-api/src/app/auto_spatial_advisory/process_hfi.py similarity index 100% rename from api/app/auto_spatial_advisory/process_hfi.py rename to backend/packages/wps-api/src/app/auto_spatial_advisory/process_hfi.py diff --git a/api/app/auto_spatial_advisory/process_high_hfi_area.py b/backend/packages/wps-api/src/app/auto_spatial_advisory/process_high_hfi_area.py similarity index 100% rename from api/app/auto_spatial_advisory/process_high_hfi_area.py rename to backend/packages/wps-api/src/app/auto_spatial_advisory/process_high_hfi_area.py diff --git a/api/app/auto_spatial_advisory/process_stats.py b/backend/packages/wps-api/src/app/auto_spatial_advisory/process_stats.py similarity index 100% rename from api/app/auto_spatial_advisory/process_stats.py rename to backend/packages/wps-api/src/app/auto_spatial_advisory/process_stats.py diff --git a/api/app/auto_spatial_advisory/process_tpi_fuel_area.py b/backend/packages/wps-api/src/app/auto_spatial_advisory/process_tpi_fuel_area.py similarity index 100% rename from api/app/auto_spatial_advisory/process_tpi_fuel_area.py rename to backend/packages/wps-api/src/app/auto_spatial_advisory/process_tpi_fuel_area.py diff --git a/api/app/auto_spatial_advisory/sfms.py b/backend/packages/wps-api/src/app/auto_spatial_advisory/sfms.py similarity index 100% rename from api/app/auto_spatial_advisory/sfms.py rename to backend/packages/wps-api/src/app/auto_spatial_advisory/sfms.py diff --git a/api/app/auto_spatial_advisory/snow.py b/backend/packages/wps-api/src/app/auto_spatial_advisory/snow.py similarity index 100% rename from api/app/auto_spatial_advisory/snow.py rename to backend/packages/wps-api/src/app/auto_spatial_advisory/snow.py diff --git a/api/app/auto_spatial_advisory/zone_stats.py b/backend/packages/wps-api/src/app/auto_spatial_advisory/zone_stats.py similarity index 100% rename from api/app/auto_spatial_advisory/zone_stats.py rename to backend/packages/wps-api/src/app/auto_spatial_advisory/zone_stats.py diff --git a/api/app/c_haines/__init__.py b/backend/packages/wps-api/src/app/c_haines/__init__.py similarity 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api/app/data/diurnal_ffmc_lookups/afternoon_overnight.csv rename to backend/packages/wps-api/src/app/data/diurnal_ffmc_lookups/afternoon_overnight.csv index 42ef73101e..0bba343bd0 100644 --- a/api/app/data/diurnal_ffmc_lookups/afternoon_overnight.csv +++ b/backend/packages/wps-api/src/app/data/diurnal_ffmc_lookups/afternoon_overnight.csv @@ -1,32 +1,32 @@ -13,14,15,16,17,18,19,20,21,22,23,0,1,2,3,4,5,6,7 -41,43,46,48,50,51,52,53,53,52,51,50,49,48,47,46,45,44,43 -48,52,55,57,60,61,62,62,62,61,59,58,56,55,54,52,51,50,49 -57,61,65,68,70,70,71,70,69,68,66,65,63,62,60,59,58,56,55 -59,63,67,70,72,72,72,72,71,69,68,66,65,63,62,61,59,58,57 -62,66,70,72,74,74,74,73,72,71,69,68,66,65,63,62,61,59,58 -63,67,71,73,75,75,75,74,73,72,70,69,67,66,64,63,61,60,59 -64,68,72,74,76,76,76,75,74,72,71,69,68,66,65,64,62,61,60 -66,69,73,75,77,77,77,76,75,73,72,70,69,67,66,64,63,62,60 -67,71,75,76,78,78,78,77,76,74,72,71,69,68,67,65,64,63,61 -69,72,76,78,79,79,78,77,76,75,73,72,70,69,67,66,65,63,62 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backend/packages/wps-api/src/app/jobs/fire_watch_calculations.py diff --git a/api/app/jobs/fuel_type_areas_per_zone.py b/backend/packages/wps-api/src/app/jobs/fuel_type_areas_per_zone.py similarity index 100% rename from api/app/jobs/fuel_type_areas_per_zone.py rename to backend/packages/wps-api/src/app/jobs/fuel_type_areas_per_zone.py diff --git a/api/app/jobs/grass_curing.py b/backend/packages/wps-api/src/app/jobs/grass_curing.py similarity index 100% rename from api/app/jobs/grass_curing.py rename to backend/packages/wps-api/src/app/jobs/grass_curing.py diff --git a/api/app/jobs/hourly_actuals.py b/backend/packages/wps-api/src/app/jobs/hourly_actuals.py similarity index 100% rename from api/app/jobs/hourly_actuals.py rename to backend/packages/wps-api/src/app/jobs/hourly_actuals.py diff --git a/api/app/jobs/model_data.md b/backend/packages/wps-api/src/app/jobs/model_data.md similarity index 100% rename from api/app/jobs/model_data.md rename to backend/packages/wps-api/src/app/jobs/model_data.md diff --git a/api/app/jobs/noon_forecasts.py b/backend/packages/wps-api/src/app/jobs/noon_forecasts.py similarity index 100% rename from api/app/jobs/noon_forecasts.py rename to backend/packages/wps-api/src/app/jobs/noon_forecasts.py diff --git a/api/app/jobs/rdps_sfms.py b/backend/packages/wps-api/src/app/jobs/rdps_sfms.py similarity index 97% rename from api/app/jobs/rdps_sfms.py rename to backend/packages/wps-api/src/app/jobs/rdps_sfms.py index 553373a922..49bece1215 100644 --- a/api/app/jobs/rdps_sfms.py +++ b/backend/packages/wps-api/src/app/jobs/rdps_sfms.py @@ -10,6 +10,7 @@ from collections.abc import Generator import logging import tempfile +import aiofiles from sqlalchemy.orm import Session from wps_shared.db.database import get_write_session_scope from wps_shared.db.crud.weather_models import ( @@ -88,12 +89,13 @@ async def _process_model_run_urls(self, model_run_hour: int, weather_param: str, if downloaded: self.files_downloaded += 1 file_name = self._get_file_name_from_url(url) - file_path = os.path.join(temporary_path, file_name) key = self._generate_s3_key(model_run_hour, weather_param, file_name) # If we've downloaded the file ok, we can now save it to S3 storage. try: async with get_client() as (client, bucket): - await client.put_object(Bucket=bucket, Key=key, Body=open(file_path, "rb")) + async with aiofiles.open(downloaded, "rb") as f: + file_content = await f.read() + await client.put_object(Bucket=bucket, Key=key, Body=file_content) create_saved_model_run_for_sfms_url(self.session, url, key) finally: # delete the file when done. diff --git a/api/app/jobs/sfms_calculations.py b/backend/packages/wps-api/src/app/jobs/sfms_calculations.py similarity index 100% rename from api/app/jobs/sfms_calculations.py rename to backend/packages/wps-api/src/app/jobs/sfms_calculations.py diff --git a/api/app/jobs/viirs_snow.py b/backend/packages/wps-api/src/app/jobs/viirs_snow.py similarity index 100% rename from api/app/jobs/viirs_snow.py rename to backend/packages/wps-api/src/app/jobs/viirs_snow.py diff --git a/api/app/main.py b/backend/packages/wps-api/src/app/main.py similarity index 100% rename from api/app/main.py rename to backend/packages/wps-api/src/app/main.py diff --git a/api/app/morecast_v2/__init__.py b/backend/packages/wps-api/src/app/morecast_v2/__init__.py similarity index 100% rename from api/app/morecast_v2/__init__.py rename to backend/packages/wps-api/src/app/morecast_v2/__init__.py diff --git a/api/app/morecast_v2/forecasts.py b/backend/packages/wps-api/src/app/morecast_v2/forecasts.py similarity index 100% rename from api/app/morecast_v2/forecasts.py rename to backend/packages/wps-api/src/app/morecast_v2/forecasts.py diff --git a/api/app/nats_publish.py b/backend/packages/wps-api/src/app/nats_publish.py similarity index 100% rename from api/app/nats_publish.py rename to backend/packages/wps-api/src/app/nats_publish.py diff --git a/api/app/percentile.py 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b/backend/packages/wps-api/src/app/tests/auto_spatial_advisory/test_process_stats.py similarity index 100% rename from api/app/tests/auto_spatial_advisory/test_process_stats.py rename to backend/packages/wps-api/src/app/tests/auto_spatial_advisory/test_process_stats.py diff --git a/api/app/tests/auto_spatial_advisory/test_zone_stats.py b/backend/packages/wps-api/src/app/tests/auto_spatial_advisory/test_zone_stats.py similarity index 100% rename from api/app/tests/auto_spatial_advisory/test_zone_stats.py rename to backend/packages/wps-api/src/app/tests/auto_spatial_advisory/test_zone_stats.py diff --git a/api/app/tests/auto_spatial_advisory/wf1-dailies.json b/backend/packages/wps-api/src/app/tests/auto_spatial_advisory/wf1-dailies.json similarity index 100% rename from api/app/tests/auto_spatial_advisory/wf1-dailies.json rename to backend/packages/wps-api/src/app/tests/auto_spatial_advisory/wf1-dailies.json diff --git a/api/app/tests/auto_spatial_advisory/wf1-hourlies.json b/backend/packages/wps-api/src/app/tests/auto_spatial_advisory/wf1-hourlies.json similarity index 100% rename from api/app/tests/auto_spatial_advisory/wf1-hourlies.json rename to backend/packages/wps-api/src/app/tests/auto_spatial_advisory/wf1-hourlies.json diff --git a/api/app/tests/c_haines/CMC_hrdps_continental_DEPR_ISBL_0850_ps2.5km_2021012618_P048-00.grib2 b/backend/packages/wps-api/src/app/tests/c_haines/CMC_hrdps_continental_DEPR_ISBL_0850_ps2.5km_2021012618_P048-00.grib2 similarity index 100% rename from api/app/tests/c_haines/CMC_hrdps_continental_DEPR_ISBL_0850_ps2.5km_2021012618_P048-00.grib2 rename to backend/packages/wps-api/src/app/tests/c_haines/CMC_hrdps_continental_DEPR_ISBL_0850_ps2.5km_2021012618_P048-00.grib2 diff --git a/api/app/tests/c_haines/CMC_hrdps_continental_TMP_ISBL_0700_ps2.5km_2021012618_P048-00.grib2 b/backend/packages/wps-api/src/app/tests/c_haines/CMC_hrdps_continental_TMP_ISBL_0700_ps2.5km_2021012618_P048-00.grib2 similarity index 100% rename from api/app/tests/c_haines/CMC_hrdps_continental_TMP_ISBL_0700_ps2.5km_2021012618_P048-00.grib2 rename to backend/packages/wps-api/src/app/tests/c_haines/CMC_hrdps_continental_TMP_ISBL_0700_ps2.5km_2021012618_P048-00.grib2 diff --git a/api/app/tests/c_haines/CMC_hrdps_continental_TMP_ISBL_0850_ps2.5km_2021012618_P048-00.grib2 b/backend/packages/wps-api/src/app/tests/c_haines/CMC_hrdps_continental_TMP_ISBL_0850_ps2.5km_2021012618_P048-00.grib2 similarity index 100% rename from api/app/tests/c_haines/CMC_hrdps_continental_TMP_ISBL_0850_ps2.5km_2021012618_P048-00.grib2 rename to backend/packages/wps-api/src/app/tests/c_haines/CMC_hrdps_continental_TMP_ISBL_0850_ps2.5km_2021012618_P048-00.grib2 diff --git a/api/app/tests/c_haines/__init__.py b/backend/packages/wps-api/src/app/tests/c_haines/__init__.py similarity index 100% rename from api/app/tests/c_haines/__init__.py rename to backend/packages/wps-api/src/app/tests/c_haines/__init__.py diff --git a/api/app/tests/c_haines/c_haines_data.json.gz b/backend/packages/wps-api/src/app/tests/c_haines/c_haines_data.json.gz similarity index 100% rename from api/app/tests/c_haines/c_haines_data.json.gz rename to backend/packages/wps-api/src/app/tests/c_haines/c_haines_data.json.gz diff --git a/api/app/tests/c_haines/endpoints/model_runs_expected_response.json b/backend/packages/wps-api/src/app/tests/c_haines/endpoints/model_runs_expected_response.json similarity index 100% rename from api/app/tests/c_haines/endpoints/model_runs_expected_response.json rename to backend/packages/wps-api/src/app/tests/c_haines/endpoints/model_runs_expected_response.json diff --git a/api/app/tests/c_haines/endpoints/most_recent_predictions_kml_expected_response.kml b/backend/packages/wps-api/src/app/tests/c_haines/endpoints/most_recent_predictions_kml_expected_response.kml similarity index 100% rename from api/app/tests/c_haines/endpoints/most_recent_predictions_kml_expected_response.kml rename to backend/packages/wps-api/src/app/tests/c_haines/endpoints/most_recent_predictions_kml_expected_response.kml diff --git a/api/app/tests/c_haines/endpoints/network-link_response.kml b/backend/packages/wps-api/src/app/tests/c_haines/endpoints/network-link_response.kml similarity index 100% rename from api/app/tests/c_haines/endpoints/network-link_response.kml rename to backend/packages/wps-api/src/app/tests/c_haines/endpoints/network-link_response.kml diff --git a/api/app/tests/c_haines/endpoints/prediction_kml_expected.kml b/backend/packages/wps-api/src/app/tests/c_haines/endpoints/prediction_kml_expected.kml similarity index 100% rename from api/app/tests/c_haines/endpoints/prediction_kml_expected.kml rename to backend/packages/wps-api/src/app/tests/c_haines/endpoints/prediction_kml_expected.kml diff --git a/api/app/tests/c_haines/endpoints/predictions_kml_expected_response.kml b/backend/packages/wps-api/src/app/tests/c_haines/endpoints/predictions_kml_expected_response.kml similarity index 100% rename from api/app/tests/c_haines/endpoints/predictions_kml_expected_response.kml rename to backend/packages/wps-api/src/app/tests/c_haines/endpoints/predictions_kml_expected_response.kml diff --git a/api/app/tests/c_haines/endpoints/test_c_haines_endpoints.py b/backend/packages/wps-api/src/app/tests/c_haines/endpoints/test_c_haines_endpoints.py similarity index 100% rename from api/app/tests/c_haines/endpoints/test_c_haines_endpoints.py rename to backend/packages/wps-api/src/app/tests/c_haines/endpoints/test_c_haines_endpoints.py diff --git a/api/app/tests/c_haines/test_bounding_box.py b/backend/packages/wps-api/src/app/tests/c_haines/test_bounding_box.py similarity index 100% rename from api/app/tests/c_haines/test_bounding_box.py rename to backend/packages/wps-api/src/app/tests/c_haines/test_bounding_box.py diff --git a/api/app/tests/c_haines/test_c_haines.py b/backend/packages/wps-api/src/app/tests/c_haines/test_c_haines.py similarity index 100% rename from api/app/tests/c_haines/test_c_haines.py rename to backend/packages/wps-api/src/app/tests/c_haines/test_c_haines.py diff --git a/api/app/tests/c_haines/test_c_haines_worker.py b/backend/packages/wps-api/src/app/tests/c_haines/test_c_haines_worker.py similarity index 100% rename from api/app/tests/c_haines/test_c_haines_worker.py rename to backend/packages/wps-api/src/app/tests/c_haines/test_c_haines_worker.py diff --git a/api/app/tests/c_haines/test_re_project_gdps_expected_output.json b/backend/packages/wps-api/src/app/tests/c_haines/test_re_project_gdps_expected_output.json similarity index 100% rename from api/app/tests/c_haines/test_re_project_gdps_expected_output.json rename to backend/packages/wps-api/src/app/tests/c_haines/test_re_project_gdps_expected_output.json diff --git a/api/app/tests/c_haines/test_re_project_gdps_input.json b/backend/packages/wps-api/src/app/tests/c_haines/test_re_project_gdps_input.json similarity index 100% rename from api/app/tests/c_haines/test_re_project_gdps_input.json rename to backend/packages/wps-api/src/app/tests/c_haines/test_re_project_gdps_input.json diff --git a/api/app/tests/c_haines/test_re_project_rdps_expected_output.json b/backend/packages/wps-api/src/app/tests/c_haines/test_re_project_rdps_expected_output.json similarity index 100% rename from api/app/tests/c_haines/test_re_project_rdps_expected_output.json rename to backend/packages/wps-api/src/app/tests/c_haines/test_re_project_rdps_expected_output.json diff --git a/api/app/tests/c_haines/test_re_project_rdps_input.json b/backend/packages/wps-api/src/app/tests/c_haines/test_re_project_rdps_input.json similarity index 100% rename from api/app/tests/c_haines/test_re_project_rdps_input.json rename to backend/packages/wps-api/src/app/tests/c_haines/test_re_project_rdps_input.json diff --git a/api/app/tests/conftest.py b/backend/packages/wps-api/src/app/tests/conftest.py similarity index 100% rename from api/app/tests/conftest.py rename to backend/packages/wps-api/src/app/tests/conftest.py diff --git a/api/app/tests/fba/test_fba_endpoint.py b/backend/packages/wps-api/src/app/tests/fba/test_fba_endpoint.py similarity index 99% rename from api/app/tests/fba/test_fba_endpoint.py rename to backend/packages/wps-api/src/app/tests/fba/test_fba_endpoint.py index 97d7d82379..96d9ca27e4 100644 --- a/api/app/tests/fba/test_fba_endpoint.py +++ b/backend/packages/wps-api/src/app/tests/fba/test_fba_endpoint.py @@ -81,6 +81,7 @@ ], ) + def create_mock_centre_tpi_stats( advisory_shape_id, source_identifier, valley_bottom, mid_slope, upper_slope, pixel_size_metres ): @@ -512,6 +513,7 @@ def test_get_fire_centre_tpi_stats_authorized(client: TestClient): assert json_response["firezone_tpi_stats"][1]["mid_slope_tpi"] is None assert json_response["firezone_tpi_stats"][1]["upper_slope_tpi"] is None + @pytest.mark.usefixtures("mock_jwt_decode") @patch("app.routers.fba.get_auth_header", mock_get_auth_header) @patch("app.routers.fba.get_tpi_stats", mock_get_tpi_stats) diff --git a/api/app/tests/fba/test_fba_endpoint_fire_centers.json b/backend/packages/wps-api/src/app/tests/fba/test_fba_endpoint_fire_centers.json similarity index 100% rename from api/app/tests/fba/test_fba_endpoint_fire_centers.json rename to backend/packages/wps-api/src/app/tests/fba/test_fba_endpoint_fire_centers.json diff --git a/api/app/tests/fba/test_process_fuel_type_area.py b/backend/packages/wps-api/src/app/tests/fba/test_process_fuel_type_area.py similarity index 100% rename from api/app/tests/fba/test_process_fuel_type_area.py rename to backend/packages/wps-api/src/app/tests/fba/test_process_fuel_type_area.py diff --git a/api/app/tests/fba_calc/__init__.py b/backend/packages/wps-api/src/app/tests/fba_calc/__init__.py similarity index 100% rename from api/app/tests/fba_calc/__init__.py rename to backend/packages/wps-api/src/app/tests/fba_calc/__init__.py diff --git a/api/app/tests/fba_calc/test_01a_0curing_firebat.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_01a_0curing_firebat.py similarity index 94% rename from api/app/tests/fba_calc/test_01a_0curing_firebat.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_01a_0curing_firebat.py index c6ae86f5c6..9054b44544 100644 --- a/api/app/tests/fba_calc/test_01a_0curing_firebat.py +++ b/backend/packages/wps-api/src/app/tests/fba_calc/test_01a_0curing_firebat.py @@ -1,5 +1,5 @@ -from httpx import AsyncClient +from httpx import ASGITransport, AsyncClient from aiohttp import ClientSession import pytest import math @@ -16,7 +16,7 @@ async def async_client(): from app.main import app as test_app - async with AsyncClient(app=test_app, base_url="https://test") as test_client: + async with AsyncClient(transport=ASGITransport(app=test_app), base_url="https://test") as test_client: yield test_client diff --git a/api/app/tests/fba_calc/test_01a_30curing_firebat.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_01a_30curing_firebat.py similarity index 94% rename from api/app/tests/fba_calc/test_01a_30curing_firebat.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_01a_30curing_firebat.py index 6d16fdcf89..827fc02fd2 100644 --- a/api/app/tests/fba_calc/test_01a_30curing_firebat.py +++ b/backend/packages/wps-api/src/app/tests/fba_calc/test_01a_30curing_firebat.py @@ -1,5 +1,5 @@ -from httpx import AsyncClient +from httpx import ASGITransport, AsyncClient from aiohttp import ClientSession import pytest import math @@ -16,7 +16,7 @@ async def async_client(): from app.main import app as test_app - async with AsyncClient(app=test_app, base_url="https://test") as test_client: + async with AsyncClient(transport=ASGITransport(app=test_app), base_url="https://test") as test_client: yield test_client diff --git a/api/app/tests/fba_calc/test_01a_90curing_firebat.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_01a_90curing_firebat.py similarity index 94% rename from api/app/tests/fba_calc/test_01a_90curing_firebat.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_01a_90curing_firebat.py index c7756631b4..5b259d7298 100644 --- a/api/app/tests/fba_calc/test_01a_90curing_firebat.py +++ b/backend/packages/wps-api/src/app/tests/fba_calc/test_01a_90curing_firebat.py @@ -1,5 +1,5 @@ -from httpx import AsyncClient +from httpx import ASGITransport, AsyncClient from aiohttp import ClientSession import pytest import math @@ -16,7 +16,7 @@ async def async_client(): from app.main import app as test_app - async with AsyncClient(app=test_app, base_url="https://test") as test_client: + async with AsyncClient(transport=ASGITransport(app=test_app), base_url="https://test") as test_client: yield test_client diff --git a/api/app/tests/fba_calc/test_01b_0curing_firebat.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_01b_0curing_firebat.py similarity index 94% rename from api/app/tests/fba_calc/test_01b_0curing_firebat.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_01b_0curing_firebat.py index 0b0ec1b9cf..c47db9402a 100644 --- a/api/app/tests/fba_calc/test_01b_0curing_firebat.py +++ b/backend/packages/wps-api/src/app/tests/fba_calc/test_01b_0curing_firebat.py @@ -1,5 +1,5 @@ -from httpx import AsyncClient +from httpx import ASGITransport, AsyncClient from aiohttp import ClientSession import pytest import math @@ -16,7 +16,7 @@ async def async_client(): from app.main import app as test_app - async with AsyncClient(app=test_app, base_url="https://test") as test_client: + async with AsyncClient(transport=ASGITransport(app=test_app), base_url="https://test") as test_client: yield test_client diff --git a/api/app/tests/fba_calc/test_01b_30curing_firebat.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_01b_30curing_firebat.py similarity index 94% rename from api/app/tests/fba_calc/test_01b_30curing_firebat.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_01b_30curing_firebat.py index 450bc48912..ae6fa2833b 100644 --- a/api/app/tests/fba_calc/test_01b_30curing_firebat.py +++ b/backend/packages/wps-api/src/app/tests/fba_calc/test_01b_30curing_firebat.py @@ -1,5 +1,5 @@ -from httpx import AsyncClient +from httpx import ASGITransport, AsyncClient from aiohttp import ClientSession import pytest import math @@ -16,7 +16,7 @@ async def async_client(): from app.main import app as test_app - async with AsyncClient(app=test_app, base_url="https://test") as test_client: + async with AsyncClient(transport=ASGITransport(app=test_app), base_url="https://test") as test_client: yield test_client diff --git a/api/app/tests/fba_calc/test_01b_90curing_firebat.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_01b_90curing_firebat.py similarity index 94% rename from api/app/tests/fba_calc/test_01b_90curing_firebat.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_01b_90curing_firebat.py index 1be728c3ef..d3feed68e3 100644 --- a/api/app/tests/fba_calc/test_01b_90curing_firebat.py +++ b/backend/packages/wps-api/src/app/tests/fba_calc/test_01b_90curing_firebat.py @@ -1,5 +1,5 @@ -from httpx import AsyncClient +from httpx import ASGITransport, AsyncClient from aiohttp import ClientSession import pytest import math @@ -16,7 +16,7 @@ async def async_client(): from app.main import app as test_app - async with AsyncClient(app=test_app, base_url="https://test") as test_client: + async with AsyncClient(transport=ASGITransport(app=test_app), base_url="https://test") as test_client: yield test_client diff --git a/api/app/tests/fba_calc/test_c1_firebat.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_c1_firebat.py similarity index 97% rename from api/app/tests/fba_calc/test_c1_firebat.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_c1_firebat.py index ae8d36d88b..3db764cbe2 100644 --- a/api/app/tests/fba_calc/test_c1_firebat.py +++ b/backend/packages/wps-api/src/app/tests/fba_calc/test_c1_firebat.py @@ -1,4 +1,4 @@ -from httpx import AsyncClient +from httpx import ASGITransport, AsyncClient from aiohttp import ClientSession import pytest import math @@ -15,7 +15,9 @@ async def async_client(): from app.main import app as test_app - async with AsyncClient(app=test_app, base_url="https://test") as test_client: + async with AsyncClient( + transport=ASGITransport(app=test_app), base_url="https://test" + ) as test_client: yield test_client @@ -64,7 +66,7 @@ async def test_c1_request_response( ) assert math.isclose(response.json()["stations"][0]["fire_weather_index"], 27.792, abs_tol=0.001) assert math.isclose( - response.json()["stations"][0]["head_fire_intensity"], 528.189, abs_tol=0.001 + response.json()["stations"][0]["head_fire_intensity"], 528.189, abs_tol=0.01 ) assert math.isclose(response.json()["stations"][0]["rate_of_spread"], 1.246, abs_tol=0.001) assert math.isclose( @@ -173,7 +175,7 @@ async def test_c1_forecast_request_response( ) assert math.isclose(response.json()["stations"][0]["fire_weather_index"], 35.640, abs_tol=0.001) assert math.isclose( - response.json()["stations"][0]["head_fire_intensity"], 2324.331, abs_tol=0.001 + response.json()["stations"][0]["head_fire_intensity"], 2324.329, abs_tol=0.01 ) assert math.isclose(response.json()["stations"][0]["rate_of_spread"], 4.249, abs_tol=0.001) assert math.isclose( diff --git a/api/app/tests/fba_calc/test_c2_firebat.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_c2_firebat.py similarity index 94% rename from api/app/tests/fba_calc/test_c2_firebat.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_c2_firebat.py index 33aa9fc6dd..c69229aceb 100644 --- a/api/app/tests/fba_calc/test_c2_firebat.py +++ b/backend/packages/wps-api/src/app/tests/fba_calc/test_c2_firebat.py @@ -1,4 +1,4 @@ -from httpx import AsyncClient +from httpx import ASGITransport, AsyncClient from aiohttp import ClientSession import pytest import math @@ -15,7 +15,9 @@ async def async_client(): from app.main import app as test_app - async with AsyncClient(app=test_app, base_url="https://test") as test_client: + async with AsyncClient( + transport=ASGITransport(app=test_app), base_url="https://test" + ) as test_client: yield test_client @@ -64,7 +66,7 @@ async def test_c2_request_response( ) assert math.isclose(response.json()["stations"][0]["fire_weather_index"], 27.792, abs_tol=0.001) assert math.isclose( - response.json()["stations"][0]["head_fire_intensity"], 13692.788, abs_tol=0.001 + response.json()["stations"][0]["head_fire_intensity"], 13692.784, abs_tol=0.01 ) assert math.isclose(response.json()["stations"][0]["rate_of_spread"], 10.328, abs_tol=0.001) assert math.isclose( diff --git a/api/app/tests/fba_calc/test_c3_firebat.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_c3_firebat.py similarity index 93% rename from api/app/tests/fba_calc/test_c3_firebat.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_c3_firebat.py index f7103eb879..6f19b5c9fd 100644 --- a/api/app/tests/fba_calc/test_c3_firebat.py +++ b/backend/packages/wps-api/src/app/tests/fba_calc/test_c3_firebat.py @@ -1,4 +1,4 @@ -from httpx import AsyncClient +from httpx import ASGITransport, AsyncClient from aiohttp import ClientSession import pytest import math @@ -15,7 +15,9 @@ async def async_client(): from app.main import app as test_app - async with AsyncClient(app=test_app, base_url="https://test") as test_client: + async with AsyncClient( + transport=ASGITransport(app=test_app), base_url="https://test" + ) as test_client: yield test_client @@ -64,7 +66,7 @@ async def test_c3_request_response( ) assert math.isclose(response.json()["stations"][0]["fire_weather_index"], 27.792, abs_tol=0.001) assert math.isclose( - response.json()["stations"][0]["head_fire_intensity"], 2911.250, abs_tol=0.001 + response.json()["stations"][0]["head_fire_intensity"], 2911.248, abs_tol=0.01 ) assert math.isclose(response.json()["stations"][0]["rate_of_spread"], 2.754, abs_tol=0.001) assert math.isclose( diff --git a/api/app/tests/fba_calc/test_c4_firebat.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_c4_firebat.py similarity index 94% rename from api/app/tests/fba_calc/test_c4_firebat.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_c4_firebat.py index 00cbaa34f9..5bdd9d7328 100644 --- a/api/app/tests/fba_calc/test_c4_firebat.py +++ b/backend/packages/wps-api/src/app/tests/fba_calc/test_c4_firebat.py @@ -1,4 +1,4 @@ -from httpx import AsyncClient +from httpx import ASGITransport, AsyncClient from aiohttp import ClientSession import pytest import math @@ -15,7 +15,9 @@ async def async_client(): from app.main import app as test_app - async with AsyncClient(app=test_app, base_url="https://test") as test_client: + async with AsyncClient( + transport=ASGITransport(app=test_app), base_url="https://test" + ) as test_client: yield test_client @@ -64,7 +66,7 @@ async def test_c4_request_response( ) assert math.isclose(response.json()["stations"][0]["fire_weather_index"], 27.792, abs_tol=0.001) assert math.isclose( - response.json()["stations"][0]["head_fire_intensity"], 14124.213, abs_tol=0.001 + response.json()["stations"][0]["head_fire_intensity"], 14124.209, abs_tol=0.01 ) assert math.isclose(response.json()["stations"][0]["rate_of_spread"], 10.312, abs_tol=0.001) assert math.isclose( diff --git a/api/app/tests/fba_calc/test_c5_firebat.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_c5_firebat.py similarity index 94% rename from api/app/tests/fba_calc/test_c5_firebat.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_c5_firebat.py index 6e5d4695a9..047f9f689b 100644 --- a/api/app/tests/fba_calc/test_c5_firebat.py +++ b/backend/packages/wps-api/src/app/tests/fba_calc/test_c5_firebat.py @@ -1,5 +1,5 @@ -from httpx import AsyncClient +from httpx import ASGITransport, AsyncClient from aiohttp import ClientSession import pytest import math @@ -16,7 +16,7 @@ async def async_client(): from app.main import app as test_app - async with AsyncClient(app=test_app, base_url="https://test") as test_client: + async with AsyncClient(transport=ASGITransport(app=test_app), base_url="https://test") as test_client: yield test_client diff --git a/api/app/tests/fba_calc/test_c6_2mcbh_firebat.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_c6_2mcbh_firebat.py similarity index 94% rename from api/app/tests/fba_calc/test_c6_2mcbh_firebat.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_c6_2mcbh_firebat.py index 895f960d98..89abe5d1b6 100644 --- a/api/app/tests/fba_calc/test_c6_2mcbh_firebat.py +++ b/backend/packages/wps-api/src/app/tests/fba_calc/test_c6_2mcbh_firebat.py @@ -1,4 +1,4 @@ -from httpx import AsyncClient +from httpx import ASGITransport, AsyncClient from aiohttp import ClientSession import pytest import math @@ -15,7 +15,9 @@ async def async_client(): from app.main import app as test_app - async with AsyncClient(app=test_app, base_url="https://test") as test_client: + async with AsyncClient( + transport=ASGITransport(app=test_app), base_url="https://test" + ) as test_client: yield test_client @@ -64,7 +66,7 @@ async def test_c6_2mcbh_request_response( ) assert math.isclose(response.json()["stations"][0]["fire_weather_index"], 27.792, abs_tol=0.001) assert math.isclose( - response.json()["stations"][0]["head_fire_intensity"], 10390.169, abs_tol=0.001 + response.json()["stations"][0]["head_fire_intensity"], 10390.163, abs_tol=0.01 ) assert math.isclose(response.json()["stations"][0]["rate_of_spread"], 7.588, abs_tol=0.001) assert math.isclose( diff --git a/api/app/tests/fba_calc/test_c6_7mcbh_firebat.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_c6_7mcbh_firebat.py similarity index 93% rename from api/app/tests/fba_calc/test_c6_7mcbh_firebat.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_c6_7mcbh_firebat.py index 026e9fffb0..ba9f5e38ff 100644 --- a/api/app/tests/fba_calc/test_c6_7mcbh_firebat.py +++ b/backend/packages/wps-api/src/app/tests/fba_calc/test_c6_7mcbh_firebat.py @@ -1,4 +1,4 @@ -from httpx import AsyncClient +from httpx import ASGITransport, AsyncClient from aiohttp import ClientSession import pytest import math @@ -15,7 +15,9 @@ async def async_client(): from app.main import app as test_app - async with AsyncClient(app=test_app, base_url="https://test") as test_client: + async with AsyncClient( + transport=ASGITransport(app=test_app), base_url="https://test" + ) as test_client: yield test_client @@ -64,7 +66,7 @@ async def test_c6_7mcbh_request_response( ) assert math.isclose(response.json()["stations"][0]["fire_weather_index"], 27.792, abs_tol=0.001) assert math.isclose( - response.json()["stations"][0]["head_fire_intensity"], 2782.235, abs_tol=0.001 + response.json()["stations"][0]["head_fire_intensity"], 2782.233, abs_tol=0.01 ) assert math.isclose(response.json()["stations"][0]["rate_of_spread"], 2.967, abs_tol=0.001) assert math.isclose( diff --git a/api/app/tests/fba_calc/test_c7_firebat.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_c7_firebat.py similarity index 94% rename from api/app/tests/fba_calc/test_c7_firebat.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_c7_firebat.py index 7f08d94b8a..528ba686bb 100644 --- a/api/app/tests/fba_calc/test_c7_firebat.py +++ b/backend/packages/wps-api/src/app/tests/fba_calc/test_c7_firebat.py @@ -1,5 +1,5 @@ -from httpx import AsyncClient +from httpx import ASGITransport, AsyncClient from aiohttp import ClientSession import pytest import math @@ -16,7 +16,7 @@ async def async_client(): from app.main import app as test_app - async with AsyncClient(app=test_app, base_url="https://test") as test_client: + async with AsyncClient(transport=ASGITransport(app=test_app), base_url="https://test") as test_client: yield test_client diff --git a/api/app/tests/fba_calc/test_d1_firebat.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_d1_firebat.py similarity index 94% rename from api/app/tests/fba_calc/test_d1_firebat.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_d1_firebat.py index b2c6a65e79..0019d5c3a5 100644 --- a/api/app/tests/fba_calc/test_d1_firebat.py +++ b/backend/packages/wps-api/src/app/tests/fba_calc/test_d1_firebat.py @@ -1,5 +1,5 @@ -from httpx import AsyncClient +from httpx import ASGITransport, AsyncClient from aiohttp import ClientSession import pytest import math @@ -16,7 +16,7 @@ async def async_client(): from app.main import app as test_app - async with AsyncClient(app=test_app, base_url="https://test") as test_client: + async with AsyncClient(transport=ASGITransport(app=test_app), base_url="https://test") as test_client: yield test_client diff --git a/api/app/tests/fba_calc/test_fba_error_random_sample.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_fba_error_random_sample.py similarity index 100% rename from api/app/tests/fba_calc/test_fba_error_random_sample.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_fba_error_random_sample.py diff --git a/api/app/tests/fba_calc/test_fba_error_redapp.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_fba_error_redapp.py similarity index 100% rename from api/app/tests/fba_calc/test_fba_error_redapp.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_fba_error_redapp.py diff --git a/api/app/tests/fba_calc/test_m1_25conifer_firebat.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_m1_25conifer_firebat.py similarity index 93% rename from api/app/tests/fba_calc/test_m1_25conifer_firebat.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_m1_25conifer_firebat.py index c1d4ef3750..140103b6ac 100644 --- a/api/app/tests/fba_calc/test_m1_25conifer_firebat.py +++ b/backend/packages/wps-api/src/app/tests/fba_calc/test_m1_25conifer_firebat.py @@ -1,4 +1,4 @@ -from httpx import AsyncClient +from httpx import ASGITransport, AsyncClient from aiohttp import ClientSession import pytest import math @@ -15,7 +15,9 @@ async def async_client(): from app.main import app as test_app - async with AsyncClient(app=test_app, base_url="https://test") as test_client: + async with AsyncClient( + transport=ASGITransport(app=test_app), base_url="https://test" + ) as test_client: yield test_client @@ -64,7 +66,7 @@ async def test_m1_25conifer_request_response( ) assert math.isclose(response.json()["stations"][0]["fire_weather_index"], 27.792, abs_tol=0.001) assert math.isclose( - response.json()["stations"][0]["head_fire_intensity"], 2269.261, abs_tol=0.001 + response.json()["stations"][0]["head_fire_intensity"], 2269.261, abs_tol=0.01 ) assert math.isclose(response.json()["stations"][0]["rate_of_spread"], 3.934, abs_tol=0.001) assert math.isclose( diff --git a/api/app/tests/fba_calc/test_m1_50conifer_firebat.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_m1_50conifer_firebat.py similarity index 94% rename from api/app/tests/fba_calc/test_m1_50conifer_firebat.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_m1_50conifer_firebat.py index 068b658877..e3e46931c1 100644 --- a/api/app/tests/fba_calc/test_m1_50conifer_firebat.py +++ b/backend/packages/wps-api/src/app/tests/fba_calc/test_m1_50conifer_firebat.py @@ -1,4 +1,4 @@ -from httpx import AsyncClient +from httpx import ASGITransport, AsyncClient from aiohttp import ClientSession import pytest import math @@ -15,7 +15,9 @@ async def async_client(): from app.main import app as test_app - async with AsyncClient(app=test_app, base_url="https://test") as test_client: + async with AsyncClient( + transport=ASGITransport(app=test_app), base_url="https://test" + ) as test_client: yield test_client @@ -64,7 +66,7 @@ async def test_m1_50conifer_request_response( ) assert math.isclose(response.json()["stations"][0]["fire_weather_index"], 27.792, abs_tol=0.001) assert math.isclose( - response.json()["stations"][0]["head_fire_intensity"], 4876.529, abs_tol=0.001 + response.json()["stations"][0]["head_fire_intensity"], 4876.527, abs_tol=0.01 ) assert math.isclose(response.json()["stations"][0]["rate_of_spread"], 6.069, abs_tol=0.001) assert math.isclose( diff --git a/api/app/tests/fba_calc/test_m1_75conifer_firebat.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_m1_75conifer_firebat.py similarity index 94% rename from api/app/tests/fba_calc/test_m1_75conifer_firebat.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_m1_75conifer_firebat.py index d6d6de8b15..90af82e5d3 100644 --- a/api/app/tests/fba_calc/test_m1_75conifer_firebat.py +++ b/backend/packages/wps-api/src/app/tests/fba_calc/test_m1_75conifer_firebat.py @@ -1,4 +1,4 @@ -from httpx import AsyncClient +from httpx import ASGITransport, AsyncClient from aiohttp import ClientSession import pytest import math @@ -15,7 +15,9 @@ async def async_client(): from app.main import app as test_app - async with AsyncClient(app=test_app, base_url="https://test") as test_client: + async with AsyncClient( + transport=ASGITransport(app=test_app), base_url="https://test" + ) as test_client: yield test_client @@ -64,7 +66,7 @@ async def test_m1_75conifer_request_response( ) assert math.isclose(response.json()["stations"][0]["fire_weather_index"], 27.792, abs_tol=0.001) assert math.isclose( - response.json()["stations"][0]["head_fire_intensity"], 8685.401, abs_tol=0.001 + response.json()["stations"][0]["head_fire_intensity"], 8685.398, abs_tol=0.01 ) assert math.isclose(response.json()["stations"][0]["rate_of_spread"], 8.204, abs_tol=0.001) assert math.isclose( diff --git a/api/app/tests/fba_calc/test_m2_25conifer_firebat.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_m2_25conifer_firebat.py similarity index 94% rename from api/app/tests/fba_calc/test_m2_25conifer_firebat.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_m2_25conifer_firebat.py index 898b4c35c7..ae6597c590 100644 --- a/api/app/tests/fba_calc/test_m2_25conifer_firebat.py +++ b/backend/packages/wps-api/src/app/tests/fba_calc/test_m2_25conifer_firebat.py @@ -1,5 +1,5 @@ -from httpx import AsyncClient +from httpx import ASGITransport, AsyncClient from aiohttp import ClientSession import pytest import math @@ -16,7 +16,7 @@ async def async_client(): from app.main import app as test_app - async with AsyncClient(app=test_app, base_url="https://test") as test_client: + async with AsyncClient(transport=ASGITransport(app=test_app), base_url="https://test") as test_client: yield test_client diff --git a/api/app/tests/fba_calc/test_m2_50conifer_firebat.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_m2_50conifer_firebat.py similarity index 94% rename from api/app/tests/fba_calc/test_m2_50conifer_firebat.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_m2_50conifer_firebat.py index 10109d6996..779811609b 100644 --- a/api/app/tests/fba_calc/test_m2_50conifer_firebat.py +++ b/backend/packages/wps-api/src/app/tests/fba_calc/test_m2_50conifer_firebat.py @@ -1,4 +1,4 @@ -from httpx import AsyncClient +from httpx import ASGITransport, AsyncClient from aiohttp import ClientSession import pytest import math @@ -15,7 +15,9 @@ async def async_client(): from app.main import app as test_app - async with AsyncClient(app=test_app, base_url="https://test") as test_client: + async with AsyncClient( + transport=ASGITransport(app=test_app), base_url="https://test" + ) as test_client: yield test_client @@ -64,7 +66,7 @@ async def test_m2_50conifer_request_response( ) assert math.isclose(response.json()["stations"][0]["fire_weather_index"], 27.792, abs_tol=0.001) assert math.isclose( - response.json()["stations"][0]["head_fire_intensity"], 4228.888, abs_tol=0.001 + response.json()["stations"][0]["head_fire_intensity"], 4228.888, abs_tol=0.01 ) assert math.isclose(response.json()["stations"][0]["rate_of_spread"], 5.350, abs_tol=0.001) assert math.isclose( diff --git a/api/app/tests/fba_calc/test_m2_75conifer_firebat.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_m2_75conifer_firebat.py similarity index 94% rename from api/app/tests/fba_calc/test_m2_75conifer_firebat.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_m2_75conifer_firebat.py index 12880822d3..bf2a2d3fad 100644 --- a/api/app/tests/fba_calc/test_m2_75conifer_firebat.py +++ b/backend/packages/wps-api/src/app/tests/fba_calc/test_m2_75conifer_firebat.py @@ -1,4 +1,4 @@ -from httpx import AsyncClient +from httpx import ASGITransport, AsyncClient from aiohttp import ClientSession import pytest import math @@ -15,7 +15,9 @@ async def async_client(): from app.main import app as test_app - async with AsyncClient(app=test_app, base_url="https://test") as test_client: + async with AsyncClient( + transport=ASGITransport(app=test_app), base_url="https://test" + ) as test_client: yield test_client @@ -64,7 +66,7 @@ async def test_m2_75conifer_request_response( ) assert math.isclose(response.json()["stations"][0]["fire_weather_index"], 27.792, abs_tol=0.001) assert math.isclose( - response.json()["stations"][0]["head_fire_intensity"], 8266.708, abs_tol=0.001 + response.json()["stations"][0]["head_fire_intensity"], 8266.705, abs_tol=0.01 ) assert math.isclose(response.json()["stations"][0]["rate_of_spread"], 7.845, abs_tol=0.001) assert math.isclose( diff --git a/api/app/tests/fba_calc/test_m3_100deadfir_firebat.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_m3_100deadfir_firebat.py similarity index 94% rename from api/app/tests/fba_calc/test_m3_100deadfir_firebat.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_m3_100deadfir_firebat.py index 9415d377ca..d82a777097 100644 --- a/api/app/tests/fba_calc/test_m3_100deadfir_firebat.py +++ b/backend/packages/wps-api/src/app/tests/fba_calc/test_m3_100deadfir_firebat.py @@ -1,4 +1,4 @@ -from httpx import AsyncClient +from httpx import ASGITransport, AsyncClient from aiohttp import ClientSession import pytest import math @@ -15,7 +15,9 @@ async def async_client(): from app.main import app as test_app - async with AsyncClient(app=test_app, base_url="https://test") as test_client: + async with AsyncClient( + transport=ASGITransport(app=test_app), base_url="https://test" + ) as test_client: yield test_client @@ -64,7 +66,7 @@ async def test_m3_100deadfir_request_response( ) assert math.isclose(response.json()["stations"][0]["fire_weather_index"], 27.792, abs_tol=0.001) assert math.isclose( - response.json()["stations"][0]["head_fire_intensity"], 42023.894, abs_tol=0.001 + response.json()["stations"][0]["head_fire_intensity"], 42023.894, abs_tol=0.01 ) assert math.isclose(response.json()["stations"][0]["rate_of_spread"], 31.058, abs_tol=0.001) assert math.isclose( diff --git a/api/app/tests/fba_calc/test_m3_30deadfir_firebat.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_m3_30deadfir_firebat.py similarity index 94% rename from api/app/tests/fba_calc/test_m3_30deadfir_firebat.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_m3_30deadfir_firebat.py index 7ef20cb193..08150ea122 100644 --- a/api/app/tests/fba_calc/test_m3_30deadfir_firebat.py +++ b/backend/packages/wps-api/src/app/tests/fba_calc/test_m3_30deadfir_firebat.py @@ -1,4 +1,4 @@ -from httpx import AsyncClient +from httpx import ASGITransport, AsyncClient from aiohttp import ClientSession import pytest import math @@ -15,7 +15,9 @@ async def async_client(): from app.main import app as test_app - async with AsyncClient(app=test_app, base_url="https://test") as test_client: + async with AsyncClient( + transport=ASGITransport(app=test_app), base_url="https://test" + ) as test_client: yield test_client @@ -64,7 +66,7 @@ async def test_m3_30deadfir_request_response( ) assert math.isclose(response.json()["stations"][0]["fire_weather_index"], 27.792, abs_tol=0.001) assert math.isclose( - response.json()["stations"][0]["head_fire_intensity"], 12415.502, abs_tol=0.001 + response.json()["stations"][0]["head_fire_intensity"], 12415.499, abs_tol=0.01 ) assert math.isclose(response.json()["stations"][0]["rate_of_spread"], 10.577, abs_tol=0.001) assert math.isclose( diff --git a/api/app/tests/fba_calc/test_m3_60deadfir_firebat.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_m3_60deadfir_firebat.py similarity index 94% rename from api/app/tests/fba_calc/test_m3_60deadfir_firebat.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_m3_60deadfir_firebat.py index 05f9f9948b..483f897734 100644 --- a/api/app/tests/fba_calc/test_m3_60deadfir_firebat.py +++ b/backend/packages/wps-api/src/app/tests/fba_calc/test_m3_60deadfir_firebat.py @@ -1,4 +1,4 @@ -from httpx import AsyncClient +from httpx import ASGITransport, AsyncClient from aiohttp import ClientSession import pytest import math @@ -15,7 +15,9 @@ async def async_client(): from app.main import app as test_app - async with AsyncClient(app=test_app, base_url="https://test") as test_client: + async with AsyncClient( + transport=ASGITransport(app=test_app), base_url="https://test" + ) as test_client: yield test_client @@ -64,7 +66,7 @@ async def test_m3_60deadfir_request_response( ) assert math.isclose(response.json()["stations"][0]["fire_weather_index"], 27.792, abs_tol=0.001) assert math.isclose( - response.json()["stations"][0]["head_fire_intensity"], 24277.177, abs_tol=0.001 + response.json()["stations"][0]["head_fire_intensity"], 24277.171, abs_tol=0.01 ) assert math.isclose(response.json()["stations"][0]["rate_of_spread"], 19.355, abs_tol=0.001) assert math.isclose( diff --git a/api/app/tests/fba_calc/test_m4_100deadfir_firebat.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_m4_100deadfir_firebat.py similarity index 94% rename from api/app/tests/fba_calc/test_m4_100deadfir_firebat.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_m4_100deadfir_firebat.py index f88fa5efd5..0895bf4b0d 100644 --- a/api/app/tests/fba_calc/test_m4_100deadfir_firebat.py +++ b/backend/packages/wps-api/src/app/tests/fba_calc/test_m4_100deadfir_firebat.py @@ -1,4 +1,4 @@ -from httpx import AsyncClient +from httpx import ASGITransport, AsyncClient from aiohttp import ClientSession import pytest import math @@ -15,7 +15,9 @@ async def async_client(): from app.main import app as test_app - async with AsyncClient(app=test_app, base_url="https://test") as test_client: + async with AsyncClient( + transport=ASGITransport(app=test_app), base_url="https://test" + ) as test_client: yield test_client @@ -64,7 +66,7 @@ async def test_m4_100deadfir_request_response( ) assert math.isclose(response.json()["stations"][0]["fire_weather_index"], 27.792, abs_tol=0.001) assert math.isclose( - response.json()["stations"][0]["head_fire_intensity"], 20799.353, abs_tol=0.001 + response.json()["stations"][0]["head_fire_intensity"], 20799.347, abs_tol=0.01 ) assert math.isclose(response.json()["stations"][0]["rate_of_spread"], 15.510, abs_tol=0.001) assert math.isclose( diff --git a/api/app/tests/fba_calc/test_m4_30deadfir_firebat.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_m4_30deadfir_firebat.py similarity index 94% rename from api/app/tests/fba_calc/test_m4_30deadfir_firebat.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_m4_30deadfir_firebat.py index f0a2c7b638..d844c4d623 100644 --- a/api/app/tests/fba_calc/test_m4_30deadfir_firebat.py +++ b/backend/packages/wps-api/src/app/tests/fba_calc/test_m4_30deadfir_firebat.py @@ -1,4 +1,4 @@ -from httpx import AsyncClient +from httpx import ASGITransport, AsyncClient from aiohttp import ClientSession import pytest import math @@ -15,7 +15,9 @@ async def async_client(): from app.main import app as test_app - async with AsyncClient(app=test_app, base_url="https://test") as test_client: + async with AsyncClient( + transport=ASGITransport(app=test_app), base_url="https://test" + ) as test_client: yield test_client @@ -64,7 +66,7 @@ async def test_m4_30deadfir_request_response( ) assert math.isclose(response.json()["stations"][0]["fire_weather_index"], 27.792, abs_tol=0.001) assert math.isclose( - response.json()["stations"][0]["head_fire_intensity"], 5605.413, abs_tol=0.001 + response.json()["stations"][0]["head_fire_intensity"], 5605.411, abs_tol=0.01 ) assert math.isclose(response.json()["stations"][0]["rate_of_spread"], 4.905, abs_tol=0.001) assert math.isclose( diff --git a/api/app/tests/fba_calc/test_m4_60deadfir_firebat.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_m4_60deadfir_firebat.py similarity index 94% rename from api/app/tests/fba_calc/test_m4_60deadfir_firebat.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_m4_60deadfir_firebat.py index db3b6f0140..2b82b594f3 100644 --- a/api/app/tests/fba_calc/test_m4_60deadfir_firebat.py +++ b/backend/packages/wps-api/src/app/tests/fba_calc/test_m4_60deadfir_firebat.py @@ -1,4 +1,4 @@ -from httpx import AsyncClient +from httpx import ASGITransport, AsyncClient from aiohttp import ClientSession import pytest import math @@ -15,7 +15,9 @@ async def async_client(): from app.main import app as test_app - async with AsyncClient(app=test_app, base_url="https://test") as test_client: + async with AsyncClient( + transport=ASGITransport(app=test_app), base_url="https://test" + ) as test_client: yield test_client @@ -64,7 +66,7 @@ async def test_m4_60deadfir_request_response( ) assert math.isclose(response.json()["stations"][0]["fire_weather_index"], 27.792, abs_tol=0.001) assert math.isclose( - response.json()["stations"][0]["head_fire_intensity"], 11599.508, abs_tol=0.001 + response.json()["stations"][0]["head_fire_intensity"], 11599.505, abs_tol=0.01 ) assert math.isclose(response.json()["stations"][0]["rate_of_spread"], 9.450, abs_tol=0.001) assert math.isclose( diff --git a/api/app/tests/fba_calc/test_r.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_r.py similarity index 100% rename from api/app/tests/fba_calc/test_r.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_r.py diff --git a/api/app/tests/fba_calc/test_s1_firebat.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_s1_firebat.py similarity index 93% rename from api/app/tests/fba_calc/test_s1_firebat.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_s1_firebat.py index f9198f92bb..c3e2e80d84 100644 --- a/api/app/tests/fba_calc/test_s1_firebat.py +++ b/backend/packages/wps-api/src/app/tests/fba_calc/test_s1_firebat.py @@ -1,4 +1,4 @@ -from httpx import AsyncClient +from httpx import ASGITransport, AsyncClient from aiohttp import ClientSession import pytest import math @@ -15,7 +15,9 @@ async def async_client(): from app.main import app as test_app - async with AsyncClient(app=test_app, base_url="https://test") as test_client: + async with AsyncClient( + transport=ASGITransport(app=test_app), base_url="https://test" + ) as test_client: yield test_client @@ -56,7 +58,7 @@ async def test_s1_forecast_request_response( ) assert math.isclose(response.json()["stations"][0]["fire_weather_index"], 35.640, abs_tol=0.001) assert math.isclose( - response.json()["stations"][0]["head_fire_intensity"], 41822.364, abs_tol=0.001 + response.json()["stations"][0]["head_fire_intensity"], 41822.364, abs_tol=0.01 ) assert math.isclose(response.json()["stations"][0]["rate_of_spread"], 18.064, abs_tol=0.001) assert math.isclose( diff --git a/api/app/tests/fba_calc/test_s2_firebat.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_s2_firebat.py similarity index 93% rename from api/app/tests/fba_calc/test_s2_firebat.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_s2_firebat.py index 3b9615def1..4b75028e0a 100644 --- a/api/app/tests/fba_calc/test_s2_firebat.py +++ b/backend/packages/wps-api/src/app/tests/fba_calc/test_s2_firebat.py @@ -1,4 +1,4 @@ -from httpx import AsyncClient +from httpx import ASGITransport, AsyncClient from aiohttp import ClientSession import pytest import math @@ -15,7 +15,9 @@ async def async_client(): from app.main import app as test_app - async with AsyncClient(app=test_app, base_url="https://test") as test_client: + async with AsyncClient( + transport=ASGITransport(app=test_app), base_url="https://test" + ) as test_client: yield test_client @@ -56,7 +58,7 @@ async def test_c1_request_response( ) assert math.isclose(response.json()["stations"][0]["fire_weather_index"], 27.792, abs_tol=0.001) assert math.isclose( - response.json()["stations"][0]["head_fire_intensity"], 21053.168, abs_tol=0.001 + response.json()["stations"][0]["head_fire_intensity"], 21053.162, abs_tol=0.01 ) assert math.isclose(response.json()["stations"][0]["rate_of_spread"], 5.072, abs_tol=0.001) assert math.isclose( diff --git a/api/app/tests/fba_calc/test_s3_firebat.py b/backend/packages/wps-api/src/app/tests/fba_calc/test_s3_firebat.py similarity index 93% rename from api/app/tests/fba_calc/test_s3_firebat.py rename to backend/packages/wps-api/src/app/tests/fba_calc/test_s3_firebat.py index 6a525be71e..5afbb831d6 100644 --- a/api/app/tests/fba_calc/test_s3_firebat.py +++ b/backend/packages/wps-api/src/app/tests/fba_calc/test_s3_firebat.py @@ -1,4 +1,4 @@ -from httpx import AsyncClient +from httpx import ASGITransport, AsyncClient from aiohttp import ClientSession import pytest import math @@ -15,7 +15,9 @@ async def async_client(): from app.main import app as test_app - async with AsyncClient(app=test_app, base_url="https://test") as test_client: + async with AsyncClient( + transport=ASGITransport(app=test_app), base_url="https://test" + ) as test_client: yield test_client @@ -56,7 +58,7 @@ async def test_c1_request_response( ) assert math.isclose(response.json()["stations"][0]["fire_weather_index"], 27.792, abs_tol=0.001) assert math.isclose( - response.json()["stations"][0]["head_fire_intensity"], 55905.091, abs_tol=0.001 + response.json()["stations"][0]["head_fire_intensity"], 55905.091, rel_tol=1e-5, abs_tol=0.1 ) assert math.isclose(response.json()["stations"][0]["rate_of_spread"], 6.510, abs_tol=0.001) assert math.isclose( diff --git a/api/app/tests/fire_behavior/test_cffdrs.py b/backend/packages/wps-api/src/app/tests/fire_behavior/test_cffdrs.py similarity index 100% rename from api/app/tests/fire_behavior/test_cffdrs.py rename to backend/packages/wps-api/src/app/tests/fire_behavior/test_cffdrs.py diff --git a/api/app/tests/fire_behavior/test_fwi_adjust.py b/backend/packages/wps-api/src/app/tests/fire_behavior/test_fwi_adjust.py similarity index 100% rename from api/app/tests/fire_behavior/test_fwi_adjust.py rename to backend/packages/wps-api/src/app/tests/fire_behavior/test_fwi_adjust.py diff --git a/api/app/tests/fire_watch/conftest.py b/backend/packages/wps-api/src/app/tests/fire_watch/conftest.py similarity index 100% rename from api/app/tests/fire_watch/conftest.py rename to backend/packages/wps-api/src/app/tests/fire_watch/conftest.py diff --git a/api/app/tests/fire_watch/test_calculate_weather.py b/backend/packages/wps-api/src/app/tests/fire_watch/test_calculate_weather.py similarity index 100% rename from api/app/tests/fire_watch/test_calculate_weather.py rename to backend/packages/wps-api/src/app/tests/fire_watch/test_calculate_weather.py diff --git a/api/app/tests/fire_watch/test_fire_watch_endpoint.py b/backend/packages/wps-api/src/app/tests/fire_watch/test_fire_watch_endpoint.py similarity index 100% rename from api/app/tests/fire_watch/test_fire_watch_endpoint.py rename to backend/packages/wps-api/src/app/tests/fire_watch/test_fire_watch_endpoint.py diff --git a/api/app/tests/fixtures/console.pathfinder.gov.bc.ca:8443/apis/apps/v1beta1/namespaces/project_namespace/postgresclusters/some_suffix.json b/backend/packages/wps-api/src/app/tests/fixtures/console.pathfinder.gov.bc.ca:8443/apis/apps/v1beta1/namespaces/project_namespace/postgresclusters/some_suffix.json similarity index 100% rename from api/app/tests/fixtures/console.pathfinder.gov.bc.ca:8443/apis/apps/v1beta1/namespaces/project_namespace/postgresclusters/some_suffix.json rename to backend/packages/wps-api/src/app/tests/fixtures/console.pathfinder.gov.bc.ca:8443/apis/apps/v1beta1/namespaces/project_namespace/postgresclusters/some_suffix.json diff --git a/api/app/tests/fixtures/console.pathfinder.gov.bc.ca:8443/apis/apps/v1beta1/namespaces/project_namespace/postgresclusters/some_suffix_fail.json b/backend/packages/wps-api/src/app/tests/fixtures/console.pathfinder.gov.bc.ca:8443/apis/apps/v1beta1/namespaces/project_namespace/postgresclusters/some_suffix_fail.json similarity index 100% rename from api/app/tests/fixtures/console.pathfinder.gov.bc.ca:8443/apis/apps/v1beta1/namespaces/project_namespace/postgresclusters/some_suffix_fail.json rename to backend/packages/wps-api/src/app/tests/fixtures/console.pathfinder.gov.bc.ca:8443/apis/apps/v1beta1/namespaces/project_namespace/postgresclusters/some_suffix_fail.json diff --git a/api/app/tests/fixtures/console.pathfinder.gov.bc.ca:8443/lookup.json b/backend/packages/wps-api/src/app/tests/fixtures/console.pathfinder.gov.bc.ca:8443/lookup.json similarity index 100% rename from api/app/tests/fixtures/console.pathfinder.gov.bc.ca:8443/lookup.json rename to backend/packages/wps-api/src/app/tests/fixtures/console.pathfinder.gov.bc.ca:8443/lookup.json diff --git a/api/app/tests/forecasts/test_noon_forecasts.json b/backend/packages/wps-api/src/app/tests/forecasts/test_noon_forecasts.json similarity index 100% rename from api/app/tests/forecasts/test_noon_forecasts.json rename to backend/packages/wps-api/src/app/tests/forecasts/test_noon_forecasts.json diff --git a/api/app/tests/forecasts/test_noon_forecasts.py b/backend/packages/wps-api/src/app/tests/forecasts/test_noon_forecasts.py similarity index 100% rename from api/app/tests/forecasts/test_noon_forecasts.py rename to backend/packages/wps-api/src/app/tests/forecasts/test_noon_forecasts.py diff --git a/api/app/tests/forecasts/test_noon_forecasts_summaries.py b/backend/packages/wps-api/src/app/tests/forecasts/test_noon_forecasts_summaries.py similarity index 100% rename from api/app/tests/forecasts/test_noon_forecasts_summaries.py rename to backend/packages/wps-api/src/app/tests/forecasts/test_noon_forecasts_summaries.py diff --git a/api/app/tests/geospatial/3005_lats.tif b/backend/packages/wps-api/src/app/tests/geospatial/3005_lats.tif similarity index 100% rename from api/app/tests/geospatial/3005_lats.tif rename to backend/packages/wps-api/src/app/tests/geospatial/3005_lats.tif diff --git a/api/app/tests/geospatial/4326_lats.tif b/backend/packages/wps-api/src/app/tests/geospatial/4326_lats.tif similarity index 100% rename from api/app/tests/geospatial/4326_lats.tif rename to backend/packages/wps-api/src/app/tests/geospatial/4326_lats.tif diff --git a/api/app/tests/geospatial/test_geospatial.py b/backend/packages/wps-api/src/app/tests/geospatial/test_geospatial.py similarity index 100% rename from api/app/tests/geospatial/test_geospatial.py rename to backend/packages/wps-api/src/app/tests/geospatial/test_geospatial.py diff --git a/api/app/tests/hfi/__init__.py b/backend/packages/wps-api/src/app/tests/hfi/__init__.py similarity index 100% rename from api/app/tests/hfi/__init__.py rename to backend/packages/wps-api/src/app/tests/hfi/__init__.py diff --git a/api/app/tests/hfi/result_request.json b/backend/packages/wps-api/src/app/tests/hfi/result_request.json similarity index 100% rename from api/app/tests/hfi/result_request.json rename to backend/packages/wps-api/src/app/tests/hfi/result_request.json diff --git a/api/app/tests/hfi/stored_request.json b/backend/packages/wps-api/src/app/tests/hfi/stored_request.json similarity index 100% rename from api/app/tests/hfi/stored_request.json rename to backend/packages/wps-api/src/app/tests/hfi/stored_request.json diff --git a/api/app/tests/hfi/test_admin_add_station_request.json b/backend/packages/wps-api/src/app/tests/hfi/test_admin_add_station_request.json similarity index 100% rename from api/app/tests/hfi/test_admin_add_station_request.json rename to backend/packages/wps-api/src/app/tests/hfi/test_admin_add_station_request.json diff --git a/api/app/tests/hfi/test_fire_centres.json b/backend/packages/wps-api/src/app/tests/hfi/test_fire_centres.json similarity index 100% rename from api/app/tests/hfi/test_fire_centres.json rename to backend/packages/wps-api/src/app/tests/hfi/test_fire_centres.json diff --git a/api/app/tests/hfi/test_hfi.py b/backend/packages/wps-api/src/app/tests/hfi/test_hfi.py similarity index 72% rename from api/app/tests/hfi/test_hfi.py rename to backend/packages/wps-api/src/app/tests/hfi/test_hfi.py index 2af1f4daa0..6bad466341 100644 --- a/api/app/tests/hfi/test_hfi.py +++ b/backend/packages/wps-api/src/app/tests/hfi/test_hfi.py @@ -5,7 +5,14 @@ import os import json from pytest_mock import MockerFixture -from app.hfi.hfi_calc import calculate_hfi_results, calculate_mean_intensity, calculate_max_intensity_group, calculate_prep_level, validate_date_range, validate_station_daily +from app.hfi.hfi_calc import ( + calculate_hfi_results, + calculate_mean_intensity, + calculate_max_intensity_group, + calculate_prep_level, + validate_date_range, + validate_station_daily, +) import wps_shared.db.models.hfi_calc as hfi_calc_models from wps_shared.schemas.hfi_calc import ( DailyResult, @@ -64,7 +71,12 @@ fire_start_ranges = [FireStartRange(label="moo", id=1), FireStartRange(label="moo", id=2)] fire_start_lookup = {1: {1: 1}, 2: {1: 1}} -planning_area_station_info = {kamloops_fc.planning_areas[0].id: [StationInfo(station_code=1, selected=True, fuel_type_id=1), StationInfo(station_code=2, selected=True, fuel_type_id=1)]} +planning_area_station_info = { + kamloops_fc.planning_areas[0].id: [ + StationInfo(station_code=1, selected=True, fuel_type_id=1), + StationInfo(station_code=2, selected=True, fuel_type_id=1), + ] +} def test_no_dailies_handled(): @@ -88,11 +100,41 @@ def test_no_dailies_handled(): highest_daily_intensity_group=None, mean_prep_level=None, daily_results=[ - DailyResult(date=datetime.now().date(), dailies=[], fire_starts=fire_start_ranges[0], mean_intensity_group=None, prep_level=None), - DailyResult(date=datetime.now().date() + timedelta(days=1), dailies=[], fire_starts=fire_start_ranges[0], mean_intensity_group=None, prep_level=None), - DailyResult(date=datetime.now().date() + timedelta(days=2), dailies=[], fire_starts=fire_start_ranges[0], mean_intensity_group=None, prep_level=None), - DailyResult(date=datetime.now().date() + timedelta(days=3), dailies=[], fire_starts=fire_start_ranges[0], mean_intensity_group=None, prep_level=None), - DailyResult(date=datetime.now().date() + timedelta(days=4), dailies=[], fire_starts=fire_start_ranges[0], mean_intensity_group=None, prep_level=None), + DailyResult( + date=datetime.now().date(), + dailies=[], + fire_starts=fire_start_ranges[0], + mean_intensity_group=None, + prep_level=None, + ), + DailyResult( + date=datetime.now().date() + timedelta(days=1), + dailies=[], + fire_starts=fire_start_ranges[0], + mean_intensity_group=None, + prep_level=None, + ), + DailyResult( + date=datetime.now().date() + timedelta(days=2), + dailies=[], + fire_starts=fire_start_ranges[0], + mean_intensity_group=None, + prep_level=None, + ), + DailyResult( + date=datetime.now().date() + timedelta(days=3), + dailies=[], + fire_starts=fire_start_ranges[0], + mean_intensity_group=None, + prep_level=None, + ), + DailyResult( + date=datetime.now().date() + timedelta(days=4), + dailies=[], + fire_starts=fire_start_ranges[0], + mean_intensity_group=None, + prep_level=None, + ), ], ) ] @@ -102,10 +144,31 @@ def test_requested_fire_starts_unaltered(mocker: MockerFixture): """Fire starts from user request remain unchanged""" start_date = datetime.now().date() - fuel_type_lookup = {1: hfi_calc_models.FuelType(id=1, abbrev="C1", description="C1", fuel_type_code="C1", percentage_conifer=100, percentage_dead_fir=0)} + fuel_type_lookup = { + 1: hfi_calc_models.FuelType( + id=1, + abbrev="C1", + description="C1", + fuel_type_code="C1", + percentage_conifer=100, + percentage_dead_fir=0, + ) + } planning_area_fire_starts = {kamloops_fc.planning_areas[0].id: [fire_start_ranges[-1]]} - wfwx_station = WFWXWeatherStation(wfwx_id="1", code=1, name="station1", latitude=12.1, longitude=12.1, elevation=123, zone_code="1") - raw_daily = {"stationId": "1", "weatherTimestamp": get_utc_now().timestamp() * 1000, "lastEntityUpdateTimestamp": get_utc_now().timestamp() * 1000} + wfwx_station = WFWXWeatherStation( + wfwx_id="1", + code=1, + name="station1", + latitude=12.1, + longitude=12.1, + elevation=123, + zone_code="1", + ) + raw_daily = { + "stationId": "1", + "weatherTimestamp": get_utc_now().timestamp() * 1000, + "lastEntityUpdateTimestamp": get_utc_now().timestamp() * 1000, + } result = calculate_hfi_results( fuel_type_lookup, @@ -202,16 +265,40 @@ def test_calculate_prep_level_empty(): assert calculate_prep_level(None, FireStartRange(id=1, label="blah"), None) is None -def test_valid_daily(): +def test_valid_daily_all_required(): """Daily with all required fields is valid""" - daily = StationDaily(code=1, date=datetime.now(), temperature=1, relative_humidity=1, wind_speed=1, wind_direction=1, precipitation=1, intensity_group=1) + daily = StationDaily( + code=1, + date=datetime.now(), + temperature=1, + relative_humidity=1, + wind_speed=1, + wind_direction=1, + precipitation=1, + intensity_group=1, + bui=1, + ffmc=1, + dmc=1, + dc=1, + isi=1, + fwi=1, + ) result = validate_station_daily(daily) assert result.valid is True -def test_valid_daily(): +def test_invalid_daily_any_required(): """Daily missing any required field is invalid""" - base_daily = StationDaily(code=1, date=datetime.now(), temperature=1, relative_humidity=1, wind_speed=1, wind_direction=1, precipitation=1, intensity_group=1) + base_daily = StationDaily( + code=1, + date=datetime.now(), + temperature=1, + relative_humidity=1, + wind_speed=1, + wind_direction=1, + precipitation=1, + intensity_group=1, + ) for field in required_daily_fields: daily = StationDaily(**base_daily.__dict__) setattr(daily, field, None) @@ -224,13 +311,36 @@ def test_valid_fuel_types_response(monkeypatch): """Assert that list of FuelType objects is converted to FuelTypesResponse object correctly""" def mock_get_fuel_types(*args, **kwargs): - fuel_type_1 = FuelType(id=1, abbrev="T1", fuel_type_code="T1", description="blah", percentage_conifer=0, percentage_dead_fir=0) - fuel_type_2 = FuelType(id=2, abbrev="T2", fuel_type_code="T2", description="bleep", percentage_conifer=0, percentage_dead_fir=0) - fuel_type_3 = FuelType(id=3, abbrev="T3", fuel_type_code="T3", description="bloop", percentage_conifer=0, percentage_dead_fir=0) + fuel_type_1 = FuelType( + id=1, + abbrev="T1", + fuel_type_code="T1", + description="blah", + percentage_conifer=0, + percentage_dead_fir=0, + ) + fuel_type_2 = FuelType( + id=2, + abbrev="T2", + fuel_type_code="T2", + description="bleep", + percentage_conifer=0, + percentage_dead_fir=0, + ) + fuel_type_3 = FuelType( + id=3, + abbrev="T3", + fuel_type_code="T3", + description="bloop", + percentage_conifer=0, + percentage_dead_fir=0, + ) return [fuel_type_1, fuel_type_2, fuel_type_3] monkeypatch.setattr(app.routers.hfi_calc, "crud_get_fuel_types", mock_get_fuel_types) - correct_response_file = os.path.join(os.path.dirname(__file__), "test_valid_fuel_types_response.json") + correct_response_file = os.path.join( + os.path.dirname(__file__), "test_valid_fuel_types_response.json" + ) client = TestClient(starlette_app) response = client.get("/api/hfi-calc/fuel_types") diff --git a/api/app/tests/hfi/test_hfi_admin.py b/backend/packages/wps-api/src/app/tests/hfi/test_hfi_admin.py similarity index 100% rename from api/app/tests/hfi/test_hfi_admin.py rename to backend/packages/wps-api/src/app/tests/hfi/test_hfi_admin.py diff --git a/api/app/tests/hfi/test_hfi_admin_endpoint.py b/backend/packages/wps-api/src/app/tests/hfi/test_hfi_admin_endpoint.py similarity index 100% rename from api/app/tests/hfi/test_hfi_admin_endpoint.py rename to backend/packages/wps-api/src/app/tests/hfi/test_hfi_admin_endpoint.py diff --git a/api/app/tests/hfi/test_hfi_endpoint_load_response.json b/backend/packages/wps-api/src/app/tests/hfi/test_hfi_endpoint_load_response.json similarity index 100% rename from api/app/tests/hfi/test_hfi_endpoint_load_response.json rename to backend/packages/wps-api/src/app/tests/hfi/test_hfi_endpoint_load_response.json diff --git a/api/app/tests/hfi/test_hfi_endpoint_request.json b/backend/packages/wps-api/src/app/tests/hfi/test_hfi_endpoint_request.json similarity index 100% rename from api/app/tests/hfi/test_hfi_endpoint_request.json rename to backend/packages/wps-api/src/app/tests/hfi/test_hfi_endpoint_request.json diff --git a/api/app/tests/hfi/test_hfi_endpoint_request.py b/backend/packages/wps-api/src/app/tests/hfi/test_hfi_endpoint_request.py similarity index 100% rename from api/app/tests/hfi/test_hfi_endpoint_request.py rename to backend/packages/wps-api/src/app/tests/hfi/test_hfi_endpoint_request.py diff --git a/api/app/tests/hfi/test_hfi_endpoint_request_load.json b/backend/packages/wps-api/src/app/tests/hfi/test_hfi_endpoint_request_load.json similarity index 100% rename from api/app/tests/hfi/test_hfi_endpoint_request_load.json rename to backend/packages/wps-api/src/app/tests/hfi/test_hfi_endpoint_request_load.json diff --git a/api/app/tests/hfi/test_hfi_endpoint_response_deselect_station.json b/backend/packages/wps-api/src/app/tests/hfi/test_hfi_endpoint_response_deselect_station.json similarity index 100% rename from api/app/tests/hfi/test_hfi_endpoint_response_deselect_station.json rename to backend/packages/wps-api/src/app/tests/hfi/test_hfi_endpoint_response_deselect_station.json diff --git a/api/app/tests/hfi/test_hfi_endpoint_response_loaded.json b/backend/packages/wps-api/src/app/tests/hfi/test_hfi_endpoint_response_loaded.json similarity index 100% rename from api/app/tests/hfi/test_hfi_endpoint_response_loaded.json rename to backend/packages/wps-api/src/app/tests/hfi/test_hfi_endpoint_response_loaded.json diff --git a/api/app/tests/hfi/test_hfi_endpoint_response_select_station.json b/backend/packages/wps-api/src/app/tests/hfi/test_hfi_endpoint_response_select_station.json similarity index 100% rename from api/app/tests/hfi/test_hfi_endpoint_response_select_station.json rename to backend/packages/wps-api/src/app/tests/hfi/test_hfi_endpoint_response_select_station.json diff --git a/api/app/tests/hfi/test_hfi_endpoint_response_set_fire_start_range.json b/backend/packages/wps-api/src/app/tests/hfi/test_hfi_endpoint_response_set_fire_start_range.json similarity index 100% rename from api/app/tests/hfi/test_hfi_endpoint_response_set_fire_start_range.json rename to backend/packages/wps-api/src/app/tests/hfi/test_hfi_endpoint_response_set_fire_start_range.json diff --git a/api/app/tests/hfi/test_hfi_endpoint_response_set_fuel_type.json b/backend/packages/wps-api/src/app/tests/hfi/test_hfi_endpoint_response_set_fuel_type.json similarity index 100% rename from api/app/tests/hfi/test_hfi_endpoint_response_set_fuel_type.json rename to backend/packages/wps-api/src/app/tests/hfi/test_hfi_endpoint_response_set_fuel_type.json diff --git a/api/app/tests/hfi/test_hfi_endpoint_set_date_range_response.json b/backend/packages/wps-api/src/app/tests/hfi/test_hfi_endpoint_set_date_range_response.json similarity index 100% rename from api/app/tests/hfi/test_hfi_endpoint_set_date_range_response.json rename to backend/packages/wps-api/src/app/tests/hfi/test_hfi_endpoint_set_date_range_response.json diff --git a/api/app/tests/hfi/test_hfi_endpoint_stored_request.json b/backend/packages/wps-api/src/app/tests/hfi/test_hfi_endpoint_stored_request.json similarity index 100% rename from api/app/tests/hfi/test_hfi_endpoint_stored_request.json rename to backend/packages/wps-api/src/app/tests/hfi/test_hfi_endpoint_stored_request.json diff --git a/api/app/tests/hfi/test_hfi_planning_areas.py b/backend/packages/wps-api/src/app/tests/hfi/test_hfi_planning_areas.py similarity index 100% rename from api/app/tests/hfi/test_hfi_planning_areas.py rename to backend/packages/wps-api/src/app/tests/hfi/test_hfi_planning_areas.py diff --git a/api/app/tests/hfi/test_hfi_ready.py b/backend/packages/wps-api/src/app/tests/hfi/test_hfi_ready.py similarity index 100% rename from api/app/tests/hfi/test_hfi_ready.py rename to backend/packages/wps-api/src/app/tests/hfi/test_hfi_ready.py diff --git a/api/app/tests/hfi/test_hfi_result.json b/backend/packages/wps-api/src/app/tests/hfi/test_hfi_result.json similarity index 100% rename from api/app/tests/hfi/test_hfi_result.json rename to backend/packages/wps-api/src/app/tests/hfi/test_hfi_result.json diff --git a/api/app/tests/hfi/test_pdf_formatter.py b/backend/packages/wps-api/src/app/tests/hfi/test_pdf_formatter.py similarity index 99% rename from api/app/tests/hfi/test_pdf_formatter.py rename to backend/packages/wps-api/src/app/tests/hfi/test_pdf_formatter.py index bc52bac17e..204ff3b8ef 100644 --- a/api/app/tests/hfi/test_pdf_formatter.py +++ b/backend/packages/wps-api/src/app/tests/hfi/test_pdf_formatter.py @@ -26,7 +26,6 @@ WeatherStationProperties, FireStartRange, ) -from wps_shared.schemas.hfi_calc import HFIResultResponse from wps_shared.schemas.shared import FuelType test_hfi_result = os.path.join(os.path.dirname(__file__), 'test_hfi_result.json') diff --git a/api/app/tests/hfi/test_pdf_generator.py b/backend/packages/wps-api/src/app/tests/hfi/test_pdf_generator.py similarity index 97% rename from api/app/tests/hfi/test_pdf_generator.py rename to backend/packages/wps-api/src/app/tests/hfi/test_pdf_generator.py index 32388f4a4a..98b4cc0a6f 100644 --- a/api/app/tests/hfi/test_pdf_generator.py +++ b/backend/packages/wps-api/src/app/tests/hfi/test_pdf_generator.py @@ -6,7 +6,6 @@ from app.hfi.pdf_generator import generate_pdf, get_pdf_filename, generate_html from app.hfi.pdf_template import get_template from wps_shared.schemas.hfi_calc import FireCentre, HFIResultResponse -from wps_shared.schemas.hfi_calc import HFIResultResponse from wps_shared.schemas.shared import FuelType test_hfi_result = os.path.join(os.path.dirname(__file__), 'test_hfi_result.json') diff --git a/api/app/tests/hfi/test_valid_fuel_types_response.json b/backend/packages/wps-api/src/app/tests/hfi/test_valid_fuel_types_response.json similarity index 100% rename from api/app/tests/hfi/test_valid_fuel_types_response.json rename to backend/packages/wps-api/src/app/tests/hfi/test_valid_fuel_types_response.json diff --git a/api/app/tests/jobs/__init__.py b/backend/packages/wps-api/src/app/tests/jobs/__init__.py similarity index 100% rename from api/app/tests/jobs/__init__.py rename to backend/packages/wps-api/src/app/tests/jobs/__init__.py diff --git a/api/app/tests/jobs/job_fixtures.py b/backend/packages/wps-api/src/app/tests/jobs/job_fixtures.py similarity index 100% rename from api/app/tests/jobs/job_fixtures.py rename to backend/packages/wps-api/src/app/tests/jobs/job_fixtures.py diff --git a/api/app/tests/jobs/test_grass_curing.py b/backend/packages/wps-api/src/app/tests/jobs/test_grass_curing.py similarity index 100% rename from api/app/tests/jobs/test_grass_curing.py rename to backend/packages/wps-api/src/app/tests/jobs/test_grass_curing.py diff --git a/api/app/tests/jobs/test_hourly_actuals.py b/backend/packages/wps-api/src/app/tests/jobs/test_hourly_actuals.py similarity index 100% rename from api/app/tests/jobs/test_hourly_actuals.py rename to backend/packages/wps-api/src/app/tests/jobs/test_hourly_actuals.py diff --git a/api/app/tests/jobs/test_noon_forecasts.py b/backend/packages/wps-api/src/app/tests/jobs/test_noon_forecasts.py similarity index 100% rename from api/app/tests/jobs/test_noon_forecasts.py rename to backend/packages/wps-api/src/app/tests/jobs/test_noon_forecasts.py diff --git a/api/app/tests/jobs/test_sfms_calculations.py b/backend/packages/wps-api/src/app/tests/jobs/test_sfms_calculations.py similarity index 100% rename from api/app/tests/jobs/test_sfms_calculations.py rename to backend/packages/wps-api/src/app/tests/jobs/test_sfms_calculations.py diff --git a/api/app/tests/jobs/test_viirs_snow.py b/backend/packages/wps-api/src/app/tests/jobs/test_viirs_snow.py similarity index 100% rename from api/app/tests/jobs/test_viirs_snow.py rename to backend/packages/wps-api/src/app/tests/jobs/test_viirs_snow.py diff --git a/api/app/tests/morecast_v2/test_forecasts.py b/backend/packages/wps-api/src/app/tests/morecast_v2/test_forecasts.py similarity index 100% rename from api/app/tests/morecast_v2/test_forecasts.py rename to backend/packages/wps-api/src/app/tests/morecast_v2/test_forecasts.py diff --git a/api/app/tests/morecast_v2/test_morecast_v2_endpoint.py b/backend/packages/wps-api/src/app/tests/morecast_v2/test_morecast_v2_endpoint.py similarity index 98% rename from api/app/tests/morecast_v2/test_morecast_v2_endpoint.py rename to backend/packages/wps-api/src/app/tests/morecast_v2/test_morecast_v2_endpoint.py index b101239922..9915715821 100644 --- a/api/app/tests/morecast_v2/test_morecast_v2_endpoint.py +++ b/backend/packages/wps-api/src/app/tests/morecast_v2/test_morecast_v2_endpoint.py @@ -1,6 +1,6 @@ import aiohttp from fastapi.testclient import TestClient -from httpx import AsyncClient +from httpx import ASGITransport, AsyncClient import pytest from datetime import datetime from aiohttp import ClientSession @@ -38,7 +38,7 @@ def client(): async def async_client(): from app.main import app as test_app - async with AsyncClient(app=test_app, base_url="https://test") as test_client: + async with AsyncClient(transport=ASGITransport(app=test_app), base_url="https://test") as test_client: yield test_client diff --git a/api/app/tests/morecast_v2/test_predictions.py b/backend/packages/wps-api/src/app/tests/morecast_v2/test_predictions.py similarity index 100% rename from api/app/tests/morecast_v2/test_predictions.py rename to backend/packages/wps-api/src/app/tests/morecast_v2/test_predictions.py diff --git a/api/app/tests/observations/test_observations_endpoint.py b/backend/packages/wps-api/src/app/tests/observations/test_observations_endpoint.py similarity index 100% rename from api/app/tests/observations/test_observations_endpoint.py rename to backend/packages/wps-api/src/app/tests/observations/test_observations_endpoint.py diff --git a/api/app/tests/redapp/test_fwi.py b/backend/packages/wps-api/src/app/tests/redapp/test_fwi.py similarity index 100% rename from api/app/tests/redapp/test_fwi.py rename to backend/packages/wps-api/src/app/tests/redapp/test_fwi.py diff --git a/api/app/tests/sfms/fixtures/bui20240528.tif b/backend/packages/wps-api/src/app/tests/sfms/fixtures/bui20240528.tif similarity index 100% rename from api/app/tests/sfms/fixtures/bui20240528.tif rename to backend/packages/wps-api/src/app/tests/sfms/fixtures/bui20240528.tif diff --git a/api/app/tests/sfms/fixtures/dc20240528.tif b/backend/packages/wps-api/src/app/tests/sfms/fixtures/dc20240528.tif similarity index 100% rename from api/app/tests/sfms/fixtures/dc20240528.tif rename to backend/packages/wps-api/src/app/tests/sfms/fixtures/dc20240528.tif diff --git a/api/app/tests/sfms/fixtures/dmc20240528.tif b/backend/packages/wps-api/src/app/tests/sfms/fixtures/dmc20240528.tif similarity index 100% rename from api/app/tests/sfms/fixtures/dmc20240528.tif rename to backend/packages/wps-api/src/app/tests/sfms/fixtures/dmc20240528.tif diff --git a/api/app/tests/sfms/test_daily_fwi_processor.py b/backend/packages/wps-api/src/app/tests/sfms/test_daily_fwi_processor.py similarity index 100% rename from api/app/tests/sfms/test_daily_fwi_processor.py rename to backend/packages/wps-api/src/app/tests/sfms/test_daily_fwi_processor.py diff --git a/api/app/tests/sfms/test_fwi_processor.py b/backend/packages/wps-api/src/app/tests/sfms/test_fwi_processor.py similarity index 100% rename from api/app/tests/sfms/test_fwi_processor.py rename to backend/packages/wps-api/src/app/tests/sfms/test_fwi_processor.py diff --git a/api/app/tests/sfms/test_hourly_ffmc_processor.py b/backend/packages/wps-api/src/app/tests/sfms/test_hourly_ffmc_processor.py similarity index 100% rename from api/app/tests/sfms/test_hourly_ffmc_processor.py rename to backend/packages/wps-api/src/app/tests/sfms/test_hourly_ffmc_processor.py diff --git a/api/app/tests/sfms/test_sfms_bui_vectorized.py b/backend/packages/wps-api/src/app/tests/sfms/test_sfms_bui_vectorized.py similarity index 100% rename from api/app/tests/sfms/test_sfms_bui_vectorized.py rename to backend/packages/wps-api/src/app/tests/sfms/test_sfms_bui_vectorized.py diff --git a/api/app/tests/sfms/test_sfms_dc_vectorized.py b/backend/packages/wps-api/src/app/tests/sfms/test_sfms_dc_vectorized.py similarity index 100% rename from api/app/tests/sfms/test_sfms_dc_vectorized.py rename to backend/packages/wps-api/src/app/tests/sfms/test_sfms_dc_vectorized.py diff --git a/api/app/tests/sfms/test_sfms_dmc_vectorized.py b/backend/packages/wps-api/src/app/tests/sfms/test_sfms_dmc_vectorized.py similarity index 100% rename from api/app/tests/sfms/test_sfms_dmc_vectorized.py rename to backend/packages/wps-api/src/app/tests/sfms/test_sfms_dmc_vectorized.py diff --git a/api/app/tests/sfms/test_sfms_endpoints.py b/backend/packages/wps-api/src/app/tests/sfms/test_sfms_endpoints.py similarity index 100% rename from api/app/tests/sfms/test_sfms_endpoints.py rename to backend/packages/wps-api/src/app/tests/sfms/test_sfms_endpoints.py diff --git a/api/app/tests/sfms/test_sfms_utils.py b/backend/packages/wps-api/src/app/tests/sfms/test_sfms_utils.py similarity index 100% rename from api/app/tests/sfms/test_sfms_utils.py rename to backend/packages/wps-api/src/app/tests/sfms/test_sfms_utils.py diff --git a/api/app/tests/snow/test_snow_endpoint.py b/backend/packages/wps-api/src/app/tests/snow/test_snow_endpoint.py similarity index 100% rename from api/app/tests/snow/test_snow_endpoint.py rename to backend/packages/wps-api/src/app/tests/snow/test_snow_endpoint.py diff --git a/api/app/tests/test_api.py b/backend/packages/wps-api/src/app/tests/test_api.py similarity index 100% rename from api/app/tests/test_api.py rename to backend/packages/wps-api/src/app/tests/test_api.py diff --git a/api/app/tests/test_auth.py b/backend/packages/wps-api/src/app/tests/test_auth.py similarity index 100% rename from api/app/tests/test_auth.py rename to backend/packages/wps-api/src/app/tests/test_auth.py diff --git a/api/app/tests/test_auth_stations_payload.json b/backend/packages/wps-api/src/app/tests/test_auth_stations_payload.json similarity index 100% rename from api/app/tests/test_auth_stations_payload.json rename to backend/packages/wps-api/src/app/tests/test_auth_stations_payload.json diff --git a/api/app/tests/test_health.py b/backend/packages/wps-api/src/app/tests/test_health.py similarity index 100% rename from api/app/tests/test_health.py rename to backend/packages/wps-api/src/app/tests/test_health.py diff --git a/api/app/tests/test_rocketchat_notifications.py b/backend/packages/wps-api/src/app/tests/test_rocketchat_notifications.py similarity index 100% rename from api/app/tests/test_rocketchat_notifications.py rename to backend/packages/wps-api/src/app/tests/test_rocketchat_notifications.py diff --git a/api/app/tests/test_station_groups.py b/backend/packages/wps-api/src/app/tests/test_station_groups.py similarity index 91% rename from api/app/tests/test_station_groups.py rename to backend/packages/wps-api/src/app/tests/test_station_groups.py index df1bbe076e..90cd0b8eca 100644 --- a/api/app/tests/test_station_groups.py +++ b/backend/packages/wps-api/src/app/tests/test_station_groups.py @@ -1,4 +1,4 @@ -from httpx import AsyncClient +from httpx import ASGITransport, AsyncClient import pytest from unittest.mock import patch @@ -11,7 +11,7 @@ async def async_client(): from app.main import app as test_app - async with AsyncClient(app=test_app, base_url="https://test") as test_client: + async with AsyncClient(transport=ASGITransport(app=test_app), base_url="https://test") as test_client: yield test_client diff --git a/api/app/tests/test_stations.py b/backend/packages/wps-api/src/app/tests/test_stations.py similarity index 100% rename from api/app/tests/test_stations.py rename to backend/packages/wps-api/src/app/tests/test_stations.py diff --git a/api/app/tests/test_stations_crud_mappings.json b/backend/packages/wps-api/src/app/tests/test_stations_crud_mappings.json similarity index 100% rename from api/app/tests/test_stations_crud_mappings.json rename to backend/packages/wps-api/src/app/tests/test_stations_crud_mappings.json diff --git a/api/app/tests/test_stations_details_expected_response.json b/backend/packages/wps-api/src/app/tests/test_stations_details_expected_response.json similarity index 100% rename from api/app/tests/test_stations_details_expected_response.json rename to backend/packages/wps-api/src/app/tests/test_stations_details_expected_response.json diff --git a/api/app/tests/test_stations_get_noon_forecast_observation_union.json b/backend/packages/wps-api/src/app/tests/test_stations_get_noon_forecast_observation_union.json similarity index 100% rename from api/app/tests/test_stations_get_noon_forecast_observation_union.json rename to backend/packages/wps-api/src/app/tests/test_stations_get_noon_forecast_observation_union.json diff --git a/api/app/tests/utils/fuel_sample.tif b/backend/packages/wps-api/src/app/tests/utils/fuel_sample.tif similarity index 100% rename from api/app/tests/utils/fuel_sample.tif rename to backend/packages/wps-api/src/app/tests/utils/fuel_sample.tif diff --git a/api/app/tests/utils/mock_jwt_decode_role.py b/backend/packages/wps-api/src/app/tests/utils/mock_jwt_decode_role.py similarity index 100% rename from api/app/tests/utils/mock_jwt_decode_role.py rename to backend/packages/wps-api/src/app/tests/utils/mock_jwt_decode_role.py diff --git a/api/app/tests/utils/numpy_utils.py b/backend/packages/wps-api/src/app/tests/utils/numpy_utils.py similarity index 100% rename from api/app/tests/utils/numpy_utils.py rename to backend/packages/wps-api/src/app/tests/utils/numpy_utils.py diff --git a/api/app/tests/utils/raster_reader.py b/backend/packages/wps-api/src/app/tests/utils/raster_reader.py similarity index 100% rename from api/app/tests/utils/raster_reader.py rename to backend/packages/wps-api/src/app/tests/utils/raster_reader.py diff --git a/api/app/tests/utils/test_c7b.py b/backend/packages/wps-api/src/app/tests/utils/test_c7b.py similarity index 100% rename from api/app/tests/utils/test_c7b.py rename to backend/packages/wps-api/src/app/tests/utils/test_c7b.py diff --git a/api/app/tests/utils/test_generate_fuel_cog.py b/backend/packages/wps-api/src/app/tests/utils/test_generate_fuel_cog.py similarity index 100% rename from api/app/tests/utils/test_generate_fuel_cog.py rename to backend/packages/wps-api/src/app/tests/utils/test_generate_fuel_cog.py diff --git a/api/app/tests/utils/test_time.py b/backend/packages/wps-api/src/app/tests/utils/test_time.py similarity index 100% rename from api/app/tests/utils/test_time.py rename to backend/packages/wps-api/src/app/tests/utils/test_time.py diff --git a/api/app/tests/weather_models/CMC_hrdps_continental_RH_TGL_2_ps2.5km_2020100700_P007-00.grib2 b/backend/packages/wps-api/src/app/tests/weather_models/CMC_hrdps_continental_RH_TGL_2_ps2.5km_2020100700_P007-00.grib2 similarity index 100% rename from api/app/tests/weather_models/CMC_hrdps_continental_RH_TGL_2_ps2.5km_2020100700_P007-00.grib2 rename to 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a/api/app/tests/weather_models/endpoints/test_models_predictions_most_recent_GDPS_[956]_crud_mappings.json b/backend/packages/wps-api/src/app/tests/weather_models/endpoints/test_models_predictions_most_recent_GDPS_[956]_crud_mappings.json similarity index 100% rename from api/app/tests/weather_models/endpoints/test_models_predictions_most_recent_GDPS_[956]_crud_mappings.json rename to backend/packages/wps-api/src/app/tests/weather_models/endpoints/test_models_predictions_most_recent_GDPS_[956]_crud_mappings.json diff --git a/api/app/tests/weather_models/endpoints/test_models_predictions_most_recent_GDPS_[956]_get_station_model_prediction_from_previous_model_run.json b/backend/packages/wps-api/src/app/tests/weather_models/endpoints/test_models_predictions_most_recent_GDPS_[956]_get_station_model_prediction_from_previous_model_run.json similarity index 100% rename from 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a/api/app/tests/wf1_stations_by_code.json b/backend/packages/wps-api/src/app/tests/wf1_stations_by_code.json similarity index 100% rename from api/app/tests/wf1_stations_by_code.json rename to backend/packages/wps-api/src/app/tests/wf1_stations_by_code.json diff --git a/api/app/utils/__init__.py b/backend/packages/wps-api/src/app/utils/__init__.py similarity index 100% rename from api/app/utils/__init__.py rename to backend/packages/wps-api/src/app/utils/__init__.py diff --git a/api/app/utils/esri.py b/backend/packages/wps-api/src/app/utils/esri.py similarity index 100% rename from api/app/utils/esri.py rename to backend/packages/wps-api/src/app/utils/esri.py diff --git a/api/app/utils/generate_fuel_cog.py b/backend/packages/wps-api/src/app/utils/generate_fuel_cog.py similarity index 100% rename from api/app/utils/generate_fuel_cog.py rename to backend/packages/wps-api/src/app/utils/generate_fuel_cog.py diff --git a/api/app/utils/pmtiles.py b/backend/packages/wps-api/src/app/utils/pmtiles.py similarity index 100% rename from api/app/utils/pmtiles.py rename to backend/packages/wps-api/src/app/utils/pmtiles.py diff --git a/api/app/utils/r_importer.py b/backend/packages/wps-api/src/app/utils/r_importer.py similarity index 100% rename from api/app/utils/r_importer.py rename to backend/packages/wps-api/src/app/utils/r_importer.py diff --git a/api/app/utils/redapp.py b/backend/packages/wps-api/src/app/utils/redapp.py similarity index 100% rename from api/app/utils/redapp.py rename to backend/packages/wps-api/src/app/utils/redapp.py diff --git a/api/app/utils/sfms.py b/backend/packages/wps-api/src/app/utils/sfms.py similarity index 100% rename from api/app/utils/sfms.py rename to backend/packages/wps-api/src/app/utils/sfms.py diff --git a/api/app/utils/singleton.py b/backend/packages/wps-api/src/app/utils/singleton.py similarity index 100% rename from api/app/utils/singleton.py rename to backend/packages/wps-api/src/app/utils/singleton.py diff --git a/api/app/utils/transform_to_epsg_3005.py b/backend/packages/wps-api/src/app/utils/transform_to_epsg_3005.py similarity index 100% rename from api/app/utils/transform_to_epsg_3005.py rename to backend/packages/wps-api/src/app/utils/transform_to_epsg_3005.py diff --git a/api/app/utils/zone_units.py b/backend/packages/wps-api/src/app/utils/zone_units.py similarity index 100% rename from api/app/utils/zone_units.py rename to backend/packages/wps-api/src/app/utils/zone_units.py diff --git a/api/app/weather_models/__init__.py b/backend/packages/wps-api/src/app/weather_models/__init__.py similarity index 100% rename from api/app/weather_models/__init__.py rename to backend/packages/wps-api/src/app/weather_models/__init__.py diff --git a/api/app/weather_models/precip_rdps_model.py b/backend/packages/wps-api/src/app/weather_models/precip_rdps_model.py similarity index 100% rename from api/app/weather_models/precip_rdps_model.py rename to backend/packages/wps-api/src/app/weather_models/precip_rdps_model.py diff --git a/backend/packages/wps-api/start.sh b/backend/packages/wps-api/start.sh new file mode 100755 index 0000000000..2f3bdc35a0 --- /dev/null +++ b/backend/packages/wps-api/start.sh @@ -0,0 +1,9 @@ +#! /usr/bin/env sh +set -e + +# run pre-start scripts +./prestart.sh +# set some defaults +GUNICORN_WORKERS="${GUNICORN_WORKERS:-4}" +# start the server +GUNICORN_CMD_ARGS="--max-requests 50 --max-requests-jitter 50" gunicorn app.main:app --timeout 200 --workers $GUNICORN_WORKERS --worker-class uvicorn.workers.UvicornWorker --bind=0.0.0.0:8080 diff --git a/backend/packages/wps-jobs/README.md b/backend/packages/wps-jobs/README.md new file mode 100644 index 0000000000..e4ba36eb5d --- /dev/null +++ b/backend/packages/wps-jobs/README.md @@ -0,0 +1,7 @@ +# wps-jobs + +Job scripts for Wildfire Predictive Services Unit. + +Contains weather model processing jobs and other batch processing tasks. + +Assumes installation and setup is done in [backend/README.md](../../../backend/README.md) diff --git a/backend/packages/wps-jobs/pyproject.toml b/backend/packages/wps-jobs/pyproject.toml new file mode 100644 index 0000000000..e6dbbedfb6 --- /dev/null +++ b/backend/packages/wps-jobs/pyproject.toml @@ -0,0 +1,36 @@ +[project] +name = "wps-jobs" +version = "0.1.0" +description = "Wildfire Predictive Services Unit Jobs" +authors = [{ name = "Darren Boss", email = "darren.boss@gov.bc.ca" }] +requires-python = ">=3.12.3,<4.0" +dependencies = [ + "wps-shared", + "scipy>=1.15.2,<2", + "scikit-learn>=1.6.1,<2", + "sqlalchemy>=2.0.38,<3", + "redis>=7.0.0,<8", + "psycopg2-binary>=2.9.10,<3", + "asyncpg>=0.30.0,<1", + "affine>=2.4.0,<3", + "numpy==2.1.*", + "fastapi==0.115.11", + "xarray>=2025.3.1,<2026", + "herbie-data>=2025.11.1,<2026", + "gdal==3.9.2", +] + +[project.optional-dependencies] +dev = [ + "ipykernel>=6.29.5,<7", +] + +[tool.uv.sources] +wps-shared = { workspace = true } + +[build-system] +requires = ["hatchling"] +build-backend = "hatchling.build" + +[tool.hatch.build.targets.wheel] +only-include = ["src"] diff --git a/wps_jobs/wps_jobs/__init__.py b/backend/packages/wps-jobs/src/__init__.py similarity index 100% rename from wps_jobs/wps_jobs/__init__.py rename to backend/packages/wps-jobs/src/__init__.py diff --git a/wps_jobs/wps_jobs/fuel_raster.py b/backend/packages/wps-jobs/src/fuel_raster.py similarity index 100% rename from wps_jobs/wps_jobs/fuel_raster.py rename to backend/packages/wps-jobs/src/fuel_raster.py diff --git a/api/scripts/__init__.py b/backend/packages/wps-jobs/src/tests/__init__.py similarity index 100% rename from api/scripts/__init__.py rename to backend/packages/wps-jobs/src/tests/__init__.py diff --git a/wps_jobs/tests/conftest.py b/backend/packages/wps-jobs/src/tests/conftest.py similarity index 54% rename from wps_jobs/tests/conftest.py rename to backend/packages/wps-jobs/src/tests/conftest.py index 9a70705395..980cd10524 100644 --- a/wps_jobs/tests/conftest.py +++ b/backend/packages/wps-jobs/src/tests/conftest.py @@ -2,8 +2,8 @@ from typing import Optional import pytest from unittest.mock import MagicMock -import wps_jobs.weather_model_jobs.env_canada -import wps_jobs.weather_model_jobs.utils.process_grib +import weather_model_jobs.env_canada +import weather_model_jobs.utils.process_grib from wps_shared.db.models.weather_models import PredictionModel, PredictionModelRunTimestamp import wps_shared.db.database from wps_shared.utils.time import get_utc_now @@ -30,16 +30,37 @@ def mock_session(monkeypatch): monkeypatch.setattr(wps_shared.db.database, "_get_write_session", MagicMock()) monkeypatch.setattr(wps_shared.db.database, "_get_read_session", MagicMock()) - prediction_model = PredictionModel(id=1, abbreviation="GDPS", projection="latlon.15x.15", name="Global Deterministic Prediction System") + prediction_model = PredictionModel( + id=1, + abbreviation="GDPS", + projection="latlon.15x.15", + name="Global Deterministic Prediction System", + ) def mock_get_prediction_model(session, model, projection) -> Optional[PredictionModel]: if model == ModelEnum.GDPS and projection == ProjectionEnum.LATLON_15X_15: return prediction_model return None - def mock_get_prediction_run(session, prediction_model_id: int, prediction_run_timestamp: datetime): - return PredictionModelRunTimestamp(id=1, prediction_model_id=1, prediction_run_timestamp=get_utc_now(), prediction_model=prediction_model, complete=True) + def mock_get_prediction_run( + session, prediction_model_id: int, prediction_run_timestamp: datetime + ): + return PredictionModelRunTimestamp( + id=1, + prediction_model_id=1, + prediction_run_timestamp=get_utc_now(), + prediction_model=prediction_model, + complete=True, + ) - monkeypatch.setattr(wps_jobs.weather_model_jobs.env_canada, "get_prediction_model", mock_get_prediction_model) - monkeypatch.setattr(wps_jobs.weather_model_jobs.utils.process_grib, "get_prediction_model", mock_get_prediction_model) - monkeypatch.setattr(wps_jobs.weather_model_jobs.env_canada, "get_prediction_run", mock_get_prediction_run) \ No newline at end of file + monkeypatch.setattr( + weather_model_jobs.env_canada, "get_prediction_model", mock_get_prediction_model + ) + monkeypatch.setattr( + weather_model_jobs.utils.process_grib, + "get_prediction_model", + mock_get_prediction_model, + ) + monkeypatch.setattr( + weather_model_jobs.env_canada, "get_prediction_run", mock_get_prediction_run + ) diff --git a/wps_jobs/tests/test_fuel_raster.py b/backend/packages/wps-jobs/src/tests/test_fuel_raster.py similarity index 85% rename from wps_jobs/tests/test_fuel_raster.py rename to backend/packages/wps-jobs/src/tests/test_fuel_raster.py index 6b1171ce3f..f271baf57c 100644 --- a/wps_jobs/tests/test_fuel_raster.py +++ b/backend/packages/wps-jobs/src/tests/test_fuel_raster.py @@ -4,8 +4,8 @@ import pytest from pytest_mock import MockerFixture -import wps_jobs.fuel_raster -from wps_jobs.fuel_raster import start_job +import fuel_raster +from fuel_raster import start_job from wps_shared.db.models import FuelTypeRaster from wps_shared.sfms.raster_addresser import RasterKeyAddresser @@ -83,9 +83,7 @@ def mock_get_fuel_key(_, version): async def mock_process_fuel_type_raster(_, __, ___): return (START_TIMESTAMP.year, 3, 100, 200, "fuel-key-v3", "abc123", CREATE_TIMESTAMP) - monkeypatch.setattr( - "wps_jobs.fuel_raster.process_fuel_type_raster", mock_process_fuel_type_raster - ) + monkeypatch.setattr("fuel_raster.process_fuel_type_raster", mock_process_fuel_type_raster) raster_addresser = RasterKeyAddresser() monkeypatch.setattr( @@ -106,7 +104,7 @@ async def mock_find_latest_version(_, __, ___, ____): mock_db = MockDB() monkeypatch.setattr( - "wps_jobs.fuel_raster.get_async_write_session_scope", lambda: mock_db.MockDBScope(mock_db) + "fuel_raster.get_async_write_session_scope", lambda: mock_db.MockDBScope(mock_db) ) # UTC now @@ -140,7 +138,7 @@ async def mock_process_fuel_type_raster_value_error(_, __, ___): raise ValueError("error") monkeypatch.setattr( - "wps_jobs.fuel_raster.process_fuel_type_raster", mock_process_fuel_type_raster_value_error + "fuel_raster.process_fuel_type_raster", mock_process_fuel_type_raster_value_error ) with pytest.raises(ValueError): @@ -156,11 +154,11 @@ def test_main_fail(mocker: MockerFixture, monkeypatch): async def mock_start_job(_, __, ___, ____): raise Exception() - rocket_chat_spy = mocker.spy(wps_jobs.fuel_raster, "send_rocketchat_notification") - monkeypatch.setattr(wps_jobs.fuel_raster, "start_job", mock_start_job) + rocket_chat_spy = mocker.spy(fuel_raster, "send_rocketchat_notification") + monkeypatch.setattr(fuel_raster, "start_job", mock_start_job) with pytest.raises(SystemExit) as excinfo: - wps_jobs.fuel_raster.main() + fuel_raster.main() # Assert that we exited with an error code. assert excinfo.value.code == os.EX_SOFTWARE @@ -172,11 +170,11 @@ def test_main_success(mocker: MockerFixture, monkeypatch): async def mock_start_job(_, __, ___): pass - rocket_chat_spy = mocker.spy(wps_jobs.fuel_raster, "send_rocketchat_notification") - monkeypatch.setattr(wps_jobs.fuel_raster, "start_job", mock_start_job) + rocket_chat_spy = mocker.spy(fuel_raster, "send_rocketchat_notification") + monkeypatch.setattr(fuel_raster, "start_job", mock_start_job) with pytest.raises(SystemExit) as excinfo: - wps_jobs.fuel_raster.main() + fuel_raster.main() # Assert that we exited with an error code. assert excinfo.value.code == os.EX_OK diff --git a/wps_jobs/tests/weather_models/20230317T18Z_MSC_HRDPS_RH_AGL-2m_RLatLon0.0225_PT001H.grib2 b/backend/packages/wps-jobs/src/tests/weather_models/20230317T18Z_MSC_HRDPS_RH_AGL-2m_RLatLon0.0225_PT001H.grib2 similarity index 100% rename from wps_jobs/tests/weather_models/20230317T18Z_MSC_HRDPS_RH_AGL-2m_RLatLon0.0225_PT001H.grib2 rename to backend/packages/wps-jobs/src/tests/weather_models/20230317T18Z_MSC_HRDPS_RH_AGL-2m_RLatLon0.0225_PT001H.grib2 diff --git a/wps_jobs/tests/weather_models/CMC_glb_RH_TGL_2_latlon.15x.15_2020071300_P000.grib2 b/backend/packages/wps-jobs/src/tests/weather_models/CMC_glb_RH_TGL_2_latlon.15x.15_2020071300_P000.grib2 similarity index 100% rename from wps_jobs/tests/weather_models/CMC_glb_RH_TGL_2_latlon.15x.15_2020071300_P000.grib2 rename to backend/packages/wps-jobs/src/tests/weather_models/CMC_glb_RH_TGL_2_latlon.15x.15_2020071300_P000.grib2 diff --git a/wps_jobs/tests/weather_models/CMC_glb_latlon.15x.15_projection_wkt.txt b/backend/packages/wps-jobs/src/tests/weather_models/CMC_glb_latlon.15x.15_projection_wkt.txt similarity index 100% rename from wps_jobs/tests/weather_models/CMC_glb_latlon.15x.15_projection_wkt.txt rename to backend/packages/wps-jobs/src/tests/weather_models/CMC_glb_latlon.15x.15_projection_wkt.txt diff --git a/wps_jobs/tests/weather_models/CMC_hrdps_continental_ps2.5km_projection_wkt.txt b/backend/packages/wps-jobs/src/tests/weather_models/CMC_hrdps_continental_ps2.5km_projection_wkt.txt similarity index 100% rename from wps_jobs/tests/weather_models/CMC_hrdps_continental_ps2.5km_projection_wkt.txt rename to backend/packages/wps-jobs/src/tests/weather_models/CMC_hrdps_continental_ps2.5km_projection_wkt.txt diff --git a/wps_jobs/tests/weather_models/CMC_reg_RH_TGL_2_ps10km_2020110500_P034.grib2 b/backend/packages/wps-jobs/src/tests/weather_models/CMC_reg_RH_TGL_2_ps10km_2020110500_P034.grib2 similarity index 100% rename from wps_jobs/tests/weather_models/CMC_reg_RH_TGL_2_ps10km_2020110500_P034.grib2 rename to backend/packages/wps-jobs/src/tests/weather_models/CMC_reg_RH_TGL_2_ps10km_2020110500_P034.grib2 diff --git a/wps_jobs/tests/weather_models/__init__.py b/backend/packages/wps-jobs/src/tests/weather_models/__init__.py similarity index 100% rename from wps_jobs/tests/weather_models/__init__.py rename to backend/packages/wps-jobs/src/tests/weather_models/__init__.py diff --git a/wps_jobs/tests/weather_models/coordinate.json b/backend/packages/wps-jobs/src/tests/weather_models/coordinate.json similarity index 100% rename from wps_jobs/tests/weather_models/coordinate.json rename to backend/packages/wps-jobs/src/tests/weather_models/coordinate.json diff --git a/wps_jobs/tests/weather_models/crud.py b/backend/packages/wps-jobs/src/tests/weather_models/crud.py similarity index 100% rename from wps_jobs/tests/weather_models/crud.py rename to backend/packages/wps-jobs/src/tests/weather_models/crud.py diff --git a/wps_jobs/tests/weather_models/points.json b/backend/packages/wps-jobs/src/tests/weather_models/points.json similarity index 100% rename from wps_jobs/tests/weather_models/points.json rename to backend/packages/wps-jobs/src/tests/weather_models/points.json diff --git a/wps_jobs/tests/weather_models/test_common_model_fetchers.py b/backend/packages/wps-jobs/src/tests/weather_models/test_common_model_fetchers.py similarity index 94% rename from wps_jobs/tests/weather_models/test_common_model_fetchers.py rename to backend/packages/wps-jobs/src/tests/weather_models/test_common_model_fetchers.py index b1917548a5..0fb4c7807b 100644 --- a/wps_jobs/tests/weather_models/test_common_model_fetchers.py +++ b/backend/packages/wps-jobs/src/tests/weather_models/test_common_model_fetchers.py @@ -4,7 +4,7 @@ import numpy import pytest -from wps_jobs.weather_model_jobs.common_model_fetchers import ( +from weather_model_jobs.common_model_fetchers import ( ModelValueProcessor, WeatherStation, accumulate_nam_precipitation, @@ -209,7 +209,7 @@ def mock_session(): def processor(mock_session): # Patch get_stations_synchronously to avoid network calls during tests with patch( - "wps_jobs.weather_model_jobs.common_model_fetchers.get_stations_synchronously", + "weather_model_jobs.common_model_fetchers.get_stations_synchronously", return_value=[], ): return ModelValueProcessor(mock_session) @@ -235,13 +235,13 @@ def mock_station_prediction(): return station_prediction -@patch("wps_jobs.weather_model_jobs.common_model_fetchers.get_weather_station_model_prediction") -@patch("wps_jobs.weather_model_jobs.common_model_fetchers.WeatherStationModelPrediction") +@patch("weather_model_jobs.common_model_fetchers.get_weather_station_model_prediction") +@patch("weather_model_jobs.common_model_fetchers.WeatherStationModelPrediction") @patch( - "wps_jobs.weather_model_jobs.common_model_fetchers.time_utils.get_utc_now", + "weather_model_jobs.common_model_fetchers.time_utils.get_utc_now", return_value=datetime(2025, 6, 5, 13, 0, 0), ) -@patch("wps_jobs.weather_model_jobs.common_model_fetchers.get_accumulated_precipitation") +@patch("weather_model_jobs.common_model_fetchers.get_accumulated_precipitation") def test_process_prediction_populates_fields_and_accumulates_correct_precip( mock_get_accumulated_precipitation, mock_get_utc_now, @@ -303,9 +303,9 @@ def test_process_prediction_populates_fields_and_accumulates_correct_precip( mock_session.add.assert_called_with(mock_station_prediction) -@patch("wps_jobs.weather_model_jobs.common_model_fetchers.get_weather_station_model_prediction") +@patch("weather_model_jobs.common_model_fetchers.get_weather_station_model_prediction") @patch( - "wps_jobs.weather_model_jobs.common_model_fetchers.time_utils.get_utc_now", + "weather_model_jobs.common_model_fetchers.time_utils.get_utc_now", return_value=datetime(2023, 9, 7, 13, 0, 0), ) def test_process_prediction_existing_prediction_is_updated( diff --git a/wps_jobs/tests/weather_models/test_ecmwf.py b/backend/packages/wps-jobs/src/tests/weather_models/test_ecmwf.py similarity index 87% rename from wps_jobs/tests/weather_models/test_ecmwf.py rename to backend/packages/wps-jobs/src/tests/weather_models/test_ecmwf.py index caf125c011..1ed2009fbe 100644 --- a/wps_jobs/tests/weather_models/test_ecmwf.py +++ b/backend/packages/wps-jobs/src/tests/weather_models/test_ecmwf.py @@ -7,16 +7,16 @@ from aiohttp import ClientSession from pytest_mock import MockerFixture -import wps_jobs.weather_model_jobs.ecmwf -from wps_jobs.weather_model_jobs import ModelEnum -from wps_jobs.weather_model_jobs.ecmwf import ( +import weather_model_jobs.ecmwf +from weather_model_jobs import ModelEnum +from weather_model_jobs.ecmwf import ( ECMWF, get_ecmwf_forecast_hours, get_model_run_hours, get_stations_dataframe, ) -from wps_jobs.weather_model_jobs.ecmwf_model_processor import ECMWFModelProcessor -from wps_jobs.weather_model_jobs.utils.process_grib import PredictionModelNotFound +from weather_model_jobs.ecmwf_model_processor import ECMWFModelProcessor +from weather_model_jobs.utils.process_grib import PredictionModelNotFound from wps_shared.db.crud.model_run_repository import ModelRunRepository from wps_shared.db.models.weather_models import PredictionModelRunTimestamp from wps_shared.schemas.stations import WeatherStation @@ -65,7 +65,7 @@ def mark_url_as_processed(self, url): def mock_herbie_instance(mocker: MockerFixture): """Fixture to set up a mocked Herbie instance.""" mock_herbie = MagicMock() - mocker.patch("wps_jobs.weather_model_jobs.ecmwf.Herbie", mock_herbie) + mocker.patch("weather_model_jobs.ecmwf.Herbie", mock_herbie) mock_herbie_instance = MagicMock() mock_herbie.return_value = mock_herbie_instance mock_herbie_instance.download.return_value = "/path/to/mock/file.grib" @@ -114,12 +114,8 @@ def test_ecmwf_process_model_run_no_url(mock_herbie_instance): def test_ecmwf_process_model_complete( complete, expected_processed, expected_complete, mock_herbie_instance, mocker: MockerFixture ): - mocker.patch( - "wps_jobs.weather_model_jobs.ecmwf.get_ecmwf_transformer", return_value=MagicMock() - ) - mocker.patch( - "wps_jobs.weather_model_jobs.ecmwf.get_stations_dataframe", return_value=MagicMock() - ) + mocker.patch("weather_model_jobs.ecmwf.get_ecmwf_transformer", return_value=MagicMock()) + mocker.patch("weather_model_jobs.ecmwf.get_stations_dataframe", return_value=MagicMock()) mocker.patch.object(ECMWFModelProcessor, "process_grib_data", return_value=MagicMock()) # Mock ECMWF.store_processed_result to do nothing mocker.patch.object(ECMWF, "store_processed_result", return_value=None) @@ -142,12 +138,8 @@ def test_ecmwf_process_model_complete( def test_ecmwf_process_model_previously_partial_processed( mock_herbie_instance, mocker: MockerFixture ): - mocker.patch( - "wps_jobs.weather_model_jobs.ecmwf.get_ecmwf_transformer", return_value=MagicMock() - ) - mocker.patch( - "wps_jobs.weather_model_jobs.ecmwf.get_stations_dataframe", return_value=MagicMock() - ) + mocker.patch("weather_model_jobs.ecmwf.get_ecmwf_transformer", return_value=MagicMock()) + mocker.patch("weather_model_jobs.ecmwf.get_stations_dataframe", return_value=MagicMock()) mocker.patch.object(ECMWFModelProcessor, "process_grib_data", return_value=MagicMock()) # Mock ECMWF.store_processed_result to do nothing mocker.patch.object(ECMWF, "store_processed_result", return_value=None) @@ -172,12 +164,8 @@ def test_ecmwf_process_model_previously_partial_processed( def test_ecmwf_process_model_partial_process(mock_herbie_instance, mocker: MockerFixture): - mocker.patch( - "wps_jobs.weather_model_jobs.ecmwf.get_ecmwf_transformer", return_value=MagicMock() - ) - mocker.patch( - "wps_jobs.weather_model_jobs.ecmwf.get_stations_dataframe", return_value=MagicMock() - ) + mocker.patch("weather_model_jobs.ecmwf.get_ecmwf_transformer", return_value=MagicMock()) + mocker.patch("weather_model_jobs.ecmwf.get_stations_dataframe", return_value=MagicMock()) mocker.patch.object(ECMWFModelProcessor, "process_grib_data", return_value=MagicMock()) # Mock ECMWF.store_processed_result to do nothing mocker.patch.object(ECMWF, "store_processed_result", return_value=None) @@ -214,7 +202,7 @@ def test_ecmwf_process(mock_herbie_instance): def test_ecmwf_process_model_run_exception(mock_herbie_instance, mocker: MockerFixture): mocker.patch( - "wps_jobs.weather_model_jobs.ecmwf.get_ecmwf_transformer", + "weather_model_jobs.ecmwf.get_ecmwf_transformer", side_effect=Exception("test exception"), ) @@ -266,7 +254,7 @@ def test_ecmwf_process_handles_exceptions(monkeypatch): mock_repo = MagicMock(spec=ModelRunRepository) stations = [WeatherStation(code="001", name="Station1", lat=10.0, long=20.0)] monkeypatch.setattr( - wps_jobs.weather_model_jobs.ecmwf.ECMWF, + weather_model_jobs.ecmwf.ECMWF, "process_model_run", lambda: Exception("Mocked exception"), ) @@ -284,11 +272,11 @@ async def mock_process_models(): pass monkeypatch.setattr(ClientSession, "get", default_mock_client_get) - monkeypatch.setattr(wps_jobs.weather_model_jobs.ecmwf, "process_models", mock_process_models) - rocket_chat_spy = mocker.spy(wps_jobs.weather_model_jobs.ecmwf, "send_rocketchat_notification") + monkeypatch.setattr(weather_model_jobs.ecmwf, "process_models", mock_process_models) + rocket_chat_spy = mocker.spy(weather_model_jobs.ecmwf, "send_rocketchat_notification") with pytest.raises(SystemExit) as excinfo: - wps_jobs.weather_model_jobs.ecmwf.main() + weather_model_jobs.ecmwf.main() # Assert that we exited with an error code. assert excinfo.value.code == os.EX_OK @@ -302,11 +290,11 @@ def test_main_fail(mocker: MockerFixture, monkeypatch): def mock_process_models(): raise Exception() - rocket_chat_spy = mocker.spy(wps_jobs.weather_model_jobs.ecmwf, "send_rocketchat_notification") - monkeypatch.setattr(wps_jobs.weather_model_jobs.ecmwf, "process_models", mock_process_models) + rocket_chat_spy = mocker.spy(weather_model_jobs.ecmwf, "send_rocketchat_notification") + monkeypatch.setattr(weather_model_jobs.ecmwf, "process_models", mock_process_models) with pytest.raises(SystemExit) as excinfo: - wps_jobs.weather_model_jobs.ecmwf.main() + weather_model_jobs.ecmwf.main() # Assert that we exited with an error code. assert excinfo.value.code == os.EX_SOFTWARE @@ -327,21 +315,19 @@ async def test_process_models_success(mocker: MockerFixture): mock_temp_dir = MagicMock() mock_temp_dir.return_value.__enter__.return_value = "/mock/temp/dir" mocker.patch("tempfile.TemporaryDirectory", mock_temp_dir) + mocker.patch("weather_model_jobs.ecmwf.get_stations_asynchronously", return_value=mock_stations) mocker.patch( - "wps_jobs.weather_model_jobs.ecmwf.get_stations_asynchronously", return_value=mock_stations - ) - mocker.patch( - "wps_jobs.weather_model_jobs.ecmwf.get_write_session_scope", return_value=mock_session_scope + "weather_model_jobs.ecmwf.get_write_session_scope", return_value=mock_session_scope ) - mock_ecmwf = mocker.patch("wps_jobs.weather_model_jobs.ecmwf.ECMWF") + mock_ecmwf = mocker.patch("weather_model_jobs.ecmwf.ECMWF") mock_ecmwf_instance = mock_ecmwf.return_value mock_ecmwf_instance.files_processed = 10 mock_temp_dir.return_value.__enter__.return_value = "/mock/temp/dir" mock_session_scope.return_value.__enter__.return_value = mock_repo - await wps_jobs.weather_model_jobs.ecmwf.process_models() + await weather_model_jobs.ecmwf.process_models() mock_ecmwf_instance.process.assert_called_once() @@ -390,10 +376,10 @@ def test_process_model_run_future_model_datetime(mocker): # set a fixed 'now' and patch time_utils.get_utc_now fixed_now = datetime(2024, 6, 1, 10, 0, 0) - mocker.patch("wps_jobs.weather_model_jobs.ecmwf.time_utils.get_utc_now", return_value=fixed_now) + mocker.patch("weather_model_jobs.ecmwf.time_utils.get_utc_now", return_value=fixed_now) ecmwf = ECMWF("/tmp", stations, mock_repo) - logger_spy = mocker.spy(wps_jobs.weather_model_jobs.ecmwf.logger, "info") + logger_spy = mocker.spy(weather_model_jobs.ecmwf.logger, "info") future_hour = 12 # fixed_now is 10:00, so 12:00 is in the future diff --git a/wps_jobs/tests/weather_models/test_ecmwf_model_processor.py b/backend/packages/wps-jobs/src/tests/weather_models/test_ecmwf_model_processor.py similarity index 51% rename from wps_jobs/tests/weather_models/test_ecmwf_model_processor.py rename to backend/packages/wps-jobs/src/tests/weather_models/test_ecmwf_model_processor.py index 7bdf24885e..040092603a 100644 --- a/wps_jobs/tests/weather_models/test_ecmwf_model_processor.py +++ b/backend/packages/wps-jobs/src/tests/weather_models/test_ecmwf_model_processor.py @@ -4,8 +4,8 @@ from datetime import datetime, timedelta, timezone from unittest.mock import MagicMock from wps_shared.db.models.weather_models import ModelRunPrediction -from wps_jobs.weather_model_jobs.ecmwf_model_processor import ECMWFModelProcessor -from wps_jobs.weather_model_jobs import ModelEnum, ModelRunInfo, ModelRunProcessResult, ProjectionEnum +from weather_model_jobs.ecmwf_model_processor import ECMWFModelProcessor +from weather_model_jobs import ModelEnum, ModelRunInfo, ModelRunProcessResult, ProjectionEnum TEST_DATETIME = datetime(2024, 10, 10, 6, tzinfo=timezone.utc) MOCK_GRIB_URL = "mock_grib_url" @@ -21,8 +21,16 @@ def mock_herbie(): "latitude": {"dims": ["latitude"], "data": [50.0, 49.75]}, "longitude": {"dims": ["longitude"], "data": [10.0, 10.25]}, }, - "data_vars": {"t2m": {"dims": ["latitude", "longitude"], "data": [[273.15, 273.16], [273.17, 273.18]], "attrs": {"units": "K", "long_name": "air temperature"}}}, - "attrs": {"description": "Temperature dataset with consistent latitude, longitude, x, and y coordinates"}, + "data_vars": { + "t2m": { + "dims": ["latitude", "longitude"], + "data": [[273.15, 273.16], [273.17, 273.18]], + "attrs": {"units": "K", "long_name": "air temperature"}, + } + }, + "attrs": { + "description": "Temperature dataset with consistent latitude, longitude, x, and y coordinates" + }, } ) dew_temp_ds = xr.Dataset.from_dict( @@ -31,7 +39,13 @@ def mock_herbie(): "latitude": {"dims": ["latitude"], "data": [50.0, 49.75]}, "longitude": {"dims": ["longitude"], "data": [10.0, 10.25]}, }, - "data_vars": {"d2m": {"dims": ["latitude", "longitude"], "data": [[273.15, 273.16], [273.17, 273.18]], "attrs": {"units": "K", "long_name": "air temperature"}}}, + "data_vars": { + "d2m": { + "dims": ["latitude", "longitude"], + "data": [[273.15, 273.16], [273.17, 273.18]], + "attrs": {"units": "K", "long_name": "air temperature"}, + } + }, "attrs": {"description": "Trimmed dataset for testing purposes"}, } ) @@ -42,12 +56,30 @@ def mock_herbie(): "longitude": {"dims": ["longitude"], "data": [10.0, 10.25]}, }, "data_vars": { - "u10": {"dims": ["latitude", "longitude"], "data": [[5.0, 5.1], [4.9, 5.0]], "attrs": {"units": "m/s", "long_name": "u-component of wind"}}, - "v10": {"dims": ["latitude", "longitude"], "data": [[3.0, 3.1], [2.9, 3.0]], "attrs": {"units": "m/s", "long_name": "v-component of wind"}}, - "si10": {"dims": ["latitude", "longitude"], "data": [[5.83, 5.9], [5.7, 5.8]], "attrs": {"units": "m/s", "long_name": "wind speed"}}, - "wdir10": {"dims": ["latitude", "longitude"], "data": [[30.96, 31.0], [30.5, 30.7]], "attrs": {"units": "degrees", "long_name": "wind direction"}}, + "u10": { + "dims": ["latitude", "longitude"], + "data": [[5.0, 5.1], [4.9, 5.0]], + "attrs": {"units": "m/s", "long_name": "u-component of wind"}, + }, + "v10": { + "dims": ["latitude", "longitude"], + "data": [[3.0, 3.1], [2.9, 3.0]], + "attrs": {"units": "m/s", "long_name": "v-component of wind"}, + }, + "si10": { + "dims": ["latitude", "longitude"], + "data": [[5.83, 5.9], [5.7, 5.8]], + "attrs": {"units": "m/s", "long_name": "wind speed"}, + }, + "wdir10": { + "dims": ["latitude", "longitude"], + "data": [[30.96, 31.0], [30.5, 30.7]], + "attrs": {"units": "degrees", "long_name": "wind direction"}, + }, + }, + "attrs": { + "description": "Wind dataset with consistent latitude, longitude, x, and y coordinates" }, - "attrs": {"description": "Wind dataset with consistent latitude, longitude, x, and y coordinates"}, } ) precip_ds = xr.Dataset.from_dict( @@ -56,7 +88,13 @@ def mock_herbie(): "latitude": {"dims": ["latitude"], "data": [50.0, 49.75]}, "longitude": {"dims": ["longitude"], "data": [10.0, 10.25]}, }, - "data_vars": {"tp": {"dims": ["latitude", "longitude"], "data": [[0.2, 0.23], [0.2, 0.23]], "attrs": {"units": "K", "long_name": "air temperature"}}}, + "data_vars": { + "tp": { + "dims": ["latitude", "longitude"], + "data": [[0.2, 0.23], [0.2, 0.23]], + "attrs": {"units": "K", "long_name": "air temperature"}, + } + }, "attrs": {"description": "Trimmed dataset for testing purposes"}, } ) @@ -84,13 +122,20 @@ def mock_stations_df(): @pytest.fixture def mock_model_run_info(): - return ModelRunInfo(model_enum=ModelEnum.ECMWF, model_run_timestamp=TEST_DATETIME, prediction_timestamp=TEST_DATETIME + timedelta(hours=0), projection=ProjectionEnum.ECMWF_LATLON) + return ModelRunInfo( + model_enum=ModelEnum.ECMWF, + model_run_timestamp=TEST_DATETIME, + prediction_timestamp=TEST_DATETIME + timedelta(hours=0), + projection=ProjectionEnum.ECMWF_LATLON, + ) def test_process_grib_data(mock_herbie, mock_stations_df, mock_model_run_info): processor = ECMWFModelProcessor(working_directory="/tmp") - result = processor.process_grib_data(herbie_instance=mock_herbie, grib_info=mock_model_run_info, stations_df=mock_stations_df) + result = processor.process_grib_data( + herbie_instance=mock_herbie, grib_info=mock_model_run_info, stations_df=mock_stations_df + ) assert isinstance(result, ModelRunProcessResult) assert result.model_run_info == mock_model_run_info @@ -100,8 +145,18 @@ def test_process_grib_data(mock_herbie, mock_stations_df, mock_model_run_info): assert ModelRunPrediction.apcp_sfc_0.name in result.data assert ModelRunPrediction.wind_tgl_10.name in result.data assert ModelRunPrediction.wdir_tgl_10.name in result.data - assert result.data[ModelRunPrediction.tmp_tgl_2.name].values[0] == pytest.approx(0.0, rel=1e-6) # kelvin to celsius - assert result.data[ModelRunPrediction.rh_tgl_2.name].values[0] == pytest.approx(100.0, rel=1e-6) # computed relative humidity - assert result.data[ModelRunPrediction.apcp_sfc_0.name].values[0] == pytest.approx(200.0, rel=1e-6) # m to mm - assert result.data[ModelRunPrediction.wind_tgl_10.name].values[0] == pytest.approx(21.0, rel=1e-2) # u, v to wind speed - assert result.data[ModelRunPrediction.wdir_tgl_10.name].values[0] == pytest.approx(239.0, rel=1e-2) # u, v to wind direction + assert result.data[ModelRunPrediction.tmp_tgl_2.name].values[0] == pytest.approx( + 0.0, rel=1e-6 + ) # kelvin to celsius + assert result.data[ModelRunPrediction.rh_tgl_2.name].values[0] == pytest.approx( + 100.0, rel=1e-6 + ) # computed relative humidity + assert result.data[ModelRunPrediction.apcp_sfc_0.name].values[0] == pytest.approx( + 200.0, rel=1e-6 + ) # m to mm + assert result.data[ModelRunPrediction.wind_tgl_10.name].values[0] == pytest.approx( + 21.0, rel=1e-2 + ) # u, v to wind speed + assert result.data[ModelRunPrediction.wdir_tgl_10.name].values[0] == pytest.approx( + 239.0, rel=1e-2 + ) # u, v to wind direction diff --git a/wps_jobs/tests/weather_models/test_ecmwf_prediction_processor.py b/backend/packages/wps-jobs/src/tests/weather_models/test_ecmwf_prediction_processor.py similarity index 99% rename from wps_jobs/tests/weather_models/test_ecmwf_prediction_processor.py rename to backend/packages/wps-jobs/src/tests/weather_models/test_ecmwf_prediction_processor.py index a33fe2ac26..b923cae035 100644 --- a/wps_jobs/tests/weather_models/test_ecmwf_prediction_processor.py +++ b/backend/packages/wps-jobs/src/tests/weather_models/test_ecmwf_prediction_processor.py @@ -4,9 +4,9 @@ from unittest.mock import call from pytest_mock import MockerFixture -import wps_jobs.weather_model_jobs.ecmwf_prediction_processor -from wps_jobs.weather_model_jobs import ModelEnum -from wps_jobs.weather_model_jobs.ecmwf_prediction_processor import ECMWFPredictionProcessor +import weather_model_jobs.ecmwf_prediction_processor +from weather_model_jobs import ModelEnum +from weather_model_jobs.ecmwf_prediction_processor import ECMWFPredictionProcessor from wps_shared.schemas.stations import WeatherStation from wps_shared.db.crud.model_run_repository import ModelRunRepository from wps_shared.db.models.weather_models import ( @@ -68,7 +68,7 @@ def test_process_model_run_for_station(setup_processor, mocker: MockerFixture): ModelRunPrediction(prediction_timestamp=datetime(2023, 10, 1, 21, 0), apcp_sfc_0=0.0), ] interpolated_noon_prediction_spy = mocker.spy( - wps_jobs.weather_model_jobs.ecmwf_prediction_processor, + weather_model_jobs.ecmwf_prediction_processor, "construct_interpolated_noon_prediction", ) initialize_station_prediction_spy = mocker.spy(processor, "initialize_station_prediction") diff --git a/wps_jobs/tests/weather_models/test_env_canada_gdps.py b/backend/packages/wps-jobs/src/tests/weather_models/test_env_canada_gdps.py similarity index 97% rename from wps_jobs/tests/weather_models/test_env_canada_gdps.py rename to backend/packages/wps-jobs/src/tests/weather_models/test_env_canada_gdps.py index 4072c61f09..c4c0029f3f 100644 --- a/wps_jobs/tests/weather_models/test_env_canada_gdps.py +++ b/backend/packages/wps-jobs/src/tests/weather_models/test_env_canada_gdps.py @@ -8,10 +8,10 @@ import requests from aiohttp import ClientSession from sqlalchemy.orm import Session -from wps_jobs.weather_model_jobs import env_canada +from weather_model_jobs import env_canada from wps_shared.weather_models.job_utils import GRIB_LAYERS, get_global_model_run_download_urls -from wps_jobs.weather_model_jobs import machine_learning -from wps_jobs.weather_model_jobs import common_model_fetchers +from weather_model_jobs import machine_learning +from weather_model_jobs import common_model_fetchers import wps_shared.utils.time as time_utils import wps_shared.db.crud.weather_models from wps_shared.db.models.weather_models import ( diff --git a/wps_jobs/tests/weather_models/test_env_canada_hrdps.py b/backend/packages/wps-jobs/src/tests/weather_models/test_env_canada_hrdps.py similarity index 90% rename from wps_jobs/tests/weather_models/test_env_canada_hrdps.py rename to backend/packages/wps-jobs/src/tests/weather_models/test_env_canada_hrdps.py index 523ea25be3..5f9b3ce4da 100644 --- a/wps_jobs/tests/weather_models/test_env_canada_hrdps.py +++ b/backend/packages/wps-jobs/src/tests/weather_models/test_env_canada_hrdps.py @@ -17,9 +17,9 @@ import wps_shared.utils.time as time_utils import wps_shared.db.database import wps_shared.db.crud.weather_models -import wps_jobs.weather_model_jobs.env_canada -import wps_jobs.weather_model_jobs.common_model_fetchers -import wps_jobs.weather_model_jobs.utils.process_grib +import weather_model_jobs.env_canada +import weather_model_jobs.common_model_fetchers +import weather_model_jobs.utils.process_grib from wps_shared.weather_models import ProjectionEnum from wps_shared.db.models.weather_models import ( PredictionModel, @@ -71,17 +71,17 @@ def mock_get_prediction_run(*args, **kwargs): return hrdps_prediction_model_run monkeypatch.setattr( - wps_jobs.weather_model_jobs.utils.process_grib, + weather_model_jobs.utils.process_grib, "get_prediction_model", mock_get_prediction_model, ) monkeypatch.setattr( - wps_jobs.weather_model_jobs.common_model_fetchers, + weather_model_jobs.common_model_fetchers, "get_prediction_model_run_timestamp_records", mock_get_hrdps_prediction_model_run_timestamp_records, ) monkeypatch.setattr( - wps_jobs.weather_model_jobs.env_canada, + weather_model_jobs.env_canada, "get_processed_file_record", mock_get_processed_file_record, ) @@ -103,7 +103,7 @@ def get_processed_file_record(session: Session, url: str): return None monkeypatch.setattr( - wps_jobs.weather_model_jobs.env_canada, + weather_model_jobs.env_canada, "get_processed_file_record", get_processed_file_record, ) @@ -143,7 +143,7 @@ def test_process_hrdps(mock_download, mock_database, monkeypatch: pytest.MonkeyP # be processed. monkeypatch.setattr(ClientSession, "get", default_mock_client_get) sys.argv = ["argv", "HRDPS"] - assert wps_jobs.weather_model_jobs.env_canada.process_models() == 1 + assert weather_model_jobs.env_canada.process_models() == 1 def test_main_fail(mocker: MockerFixture, monkeypatch): @@ -153,15 +153,11 @@ def test_main_fail(mocker: MockerFixture, monkeypatch): def mock_process_models(): raise Exception() - rocket_chat_spy = mocker.spy( - wps_jobs.weather_model_jobs.env_canada, "send_rocketchat_notification" - ) - monkeypatch.setattr( - wps_jobs.weather_model_jobs.env_canada, "process_models", mock_process_models - ) + rocket_chat_spy = mocker.spy(weather_model_jobs.env_canada, "send_rocketchat_notification") + monkeypatch.setattr(weather_model_jobs.env_canada, "process_models", mock_process_models) with pytest.raises(SystemExit) as excinfo: - wps_jobs.weather_model_jobs.env_canada.main() + weather_model_jobs.env_canada.main() # Assert that we exited with an error code. assert excinfo.value.code == os.EX_SOFTWARE @@ -225,7 +221,7 @@ def test_parse_high_res_model_url_correct_format(): actual_projection, actual_model_run_timestamp, actual_prediction_timestamp, - ) = wps_jobs.weather_model_jobs.env_canada.parse_high_res_model_url(case["url"]) + ) = weather_model_jobs.env_canada.parse_high_res_model_url(case["url"]) assert actual_variable_name == case["variable_name"] assert actual_projection == case["projection"] assert actual_model_run_timestamp == case["model_run_timestamp"] @@ -245,4 +241,4 @@ def test_part_high_res_model_url_incorrect_format(): for test_case in bad_urls: with pytest.raises(Exception): - wps_jobs.weather_model_jobs.env_canada.parse_high_res_model_url(test_case) + weather_model_jobs.env_canada.parse_high_res_model_url(test_case) diff --git a/wps_jobs/tests/weather_models/test_env_canada_rdps.py b/backend/packages/wps-jobs/src/tests/weather_models/test_env_canada_rdps.py similarity index 91% rename from wps_jobs/tests/weather_models/test_env_canada_rdps.py rename to backend/packages/wps-jobs/src/tests/weather_models/test_env_canada_rdps.py index d57ed56b63..5009d9ecf0 100644 --- a/wps_jobs/tests/weather_models/test_env_canada_rdps.py +++ b/backend/packages/wps-jobs/src/tests/weather_models/test_env_canada_rdps.py @@ -10,9 +10,9 @@ from sqlalchemy.orm import Session from wps_shared.weather_models.job_utils import GRIB_LAYERS, get_regional_model_run_download_urls import wps_shared.utils.time as time_utils -import wps_jobs.weather_model_jobs.utils.process_grib -import wps_jobs.weather_model_jobs.env_canada -import wps_jobs.weather_model_jobs.common_model_fetchers +import weather_model_jobs.utils.process_grib +import weather_model_jobs.env_canada +import weather_model_jobs.common_model_fetchers import wps_shared.db.crud.weather_models from wps_shared.db.models.weather_models import ( PredictionModel, @@ -63,17 +63,17 @@ def mock_get_prediction_run(*args, **kwargs): return rdps_prediction_model_run monkeypatch.setattr( - wps_jobs.weather_model_jobs.utils.process_grib, + weather_model_jobs.utils.process_grib, "get_prediction_model", mock_get_prediction_model, ) monkeypatch.setattr( - wps_jobs.weather_model_jobs.common_model_fetchers, + weather_model_jobs.common_model_fetchers, "get_prediction_model_run_timestamp_records", mock_get_rdps_prediction_model_run_timestamp_records, ) monkeypatch.setattr( - wps_jobs.weather_model_jobs.env_canada, + weather_model_jobs.env_canada, "get_processed_file_record", mock_get_processed_file_record, ) @@ -95,7 +95,7 @@ def get_processed_file_record(session: Session, url: str): return None monkeypatch.setattr( - wps_jobs.weather_model_jobs.env_canada, + weather_model_jobs.env_canada, "get_processed_file_record", get_processed_file_record, ) @@ -144,4 +144,4 @@ def test_process_rdps(mock_download, mock_database, monkeypatch: pytest.MonkeyPa # be processed. monkeypatch.setattr(ClientSession, "get", default_mock_client_get) sys.argv = ["argv", "RDPS"] - assert wps_jobs.weather_model_jobs.env_canada.process_models() == 1 + assert weather_model_jobs.env_canada.process_models() == 1 diff --git a/wps_jobs/tests/weather_models/test_grib_processing.py b/backend/packages/wps-jobs/src/tests/weather_models/test_grib_processing.py similarity index 50% rename from wps_jobs/tests/weather_models/test_grib_processing.py rename to backend/packages/wps-jobs/src/tests/weather_models/test_grib_processing.py index 331cf2133e..4077aebc9c 100644 --- a/wps_jobs/tests/weather_models/test_grib_processing.py +++ b/backend/packages/wps-jobs/src/tests/weather_models/test_grib_processing.py @@ -8,7 +8,7 @@ from pyproj import CRS from osgeo import gdal from wps_shared.geospatial.geospatial import NAD83_CRS -import wps_jobs.weather_model_jobs.utils.process_grib as process_grib +import weather_model_jobs.utils.process_grib as process_grib logger = logging.getLogger(__name__) @@ -35,7 +35,11 @@ def read_file_contents(filename): @pytest.mark.parametrize( "filename,origin,pixel_size", [ - ("CMC_glb_RH_TGL_2_latlon.15x.15_2020071300_P000.grib2", (-180.075, 90.075), (0.15000000000000002, -0.15)), + ( + "CMC_glb_RH_TGL_2_latlon.15x.15_2020071300_P000.grib2", + (-180.075, 90.075), + (0.15000000000000002, -0.15), + ), ], ) def test_get_dataset_geometry(filename, origin, pixel_size): @@ -51,22 +55,53 @@ def test_get_dataset_geometry(filename, origin, pixel_size): @pytest.mark.parametrize( "geotransform,wkt_projection_string,geographic_coordinate,raster_coordinate", [ - ([-2099127.494496938, 2500.0, 0.0, -2099388.521499629, 0.0, -2500.0], "CMC_hrdps_continental_ps2.5km_projection_wkt.txt", [-120.4816667, 50.6733333], (472, 819)), - ([-2099127.494496938, 2500.0, 0.0, -2099388.521499629, 0.0, -2500.0], "CMC_hrdps_continental_ps2.5km_projection_wkt.txt", [-116.7464000, 49.4358000], (572, 897)), - ([-2099127.494496938, 2500.0, 0.0, -2099388.521499629, 0.0, -2500.0], "CMC_hrdps_continental_ps2.5km_projection_wkt.txt", [-123.2732667, 52.0837700], (409, 736)), - ([-180.075, 0.15000000000000002, 0.0, 90.075, 0.0, -0.15], "CMC_glb_latlon.15x.15_projection_wkt.txt", [-120.4816667, 50.6733333], (397, 262)), - ([-180.075, 0.15000000000000002, 0.0, 90.075, 0.0, -0.15], "CMC_glb_latlon.15x.15_projection_wkt.txt", [-116.7464000, 49.4358000], (422, 270)), - ([-180.075, 0.15000000000000002, 0.0, 90.075, 0.0, -0.15], "CMC_glb_latlon.15x.15_projection_wkt.txt", [-123.2732667, 52.0837700], (378, 253)), + ( + [-2099127.494496938, 2500.0, 0.0, -2099388.521499629, 0.0, -2500.0], + "CMC_hrdps_continental_ps2.5km_projection_wkt.txt", + [-120.4816667, 50.6733333], + (472, 819), + ), + ( + [-2099127.494496938, 2500.0, 0.0, -2099388.521499629, 0.0, -2500.0], + "CMC_hrdps_continental_ps2.5km_projection_wkt.txt", + [-116.7464000, 49.4358000], + (572, 897), + ), + ( + [-2099127.494496938, 2500.0, 0.0, -2099388.521499629, 0.0, -2500.0], + "CMC_hrdps_continental_ps2.5km_projection_wkt.txt", + [-123.2732667, 52.0837700], + (409, 736), + ), + ( + [-180.075, 0.15000000000000002, 0.0, 90.075, 0.0, -0.15], + "CMC_glb_latlon.15x.15_projection_wkt.txt", + [-120.4816667, 50.6733333], + (397, 262), + ), + ( + [-180.075, 0.15000000000000002, 0.0, 90.075, 0.0, -0.15], + "CMC_glb_latlon.15x.15_projection_wkt.txt", + [-116.7464000, 49.4358000], + (422, 270), + ), + ( + [-180.075, 0.15000000000000002, 0.0, 90.075, 0.0, -0.15], + "CMC_glb_latlon.15x.15_projection_wkt.txt", + [-123.2732667, 52.0837700], + (378, 253), + ), ], ) -def test_calculate_raster_coordinates(geotransform, wkt_projection_string, geographic_coordinate, raster_coordinate): +def test_calculate_raster_coordinates( + geotransform, wkt_projection_string, geographic_coordinate, raster_coordinate +): wkt_string = read_file_contents(wkt_projection_string) proj_crs = CRS.from_string(wkt_string) transformer = process_grib.get_transformer(NAD83_CRS, proj_crs) padf_transform = Affine.from_gdal(*geotransform) longitude, latitude = geographic_coordinate - expected_raster_coordinate = process_grib.calculate_raster_coordinate(longitude, latitude, padf_transform, transformer) + expected_raster_coordinate = process_grib.calculate_raster_coordinate( + longitude, latitude, padf_transform, transformer + ) assert expected_raster_coordinate == raster_coordinate - - - diff --git a/wps_jobs/tests/weather_models/test_historic_predictions_db.json b/backend/packages/wps-jobs/src/tests/weather_models/test_historic_predictions_db.json similarity index 100% rename from wps_jobs/tests/weather_models/test_historic_predictions_db.json rename to backend/packages/wps-jobs/src/tests/weather_models/test_historic_predictions_db.json diff --git a/wps_jobs/tests/weather_models/test_interpolate.py b/backend/packages/wps-jobs/src/tests/weather_models/test_interpolate.py similarity index 75% rename from wps_jobs/tests/weather_models/test_interpolate.py rename to backend/packages/wps-jobs/src/tests/weather_models/test_interpolate.py index d9c9a1294e..085bd05e57 100644 --- a/wps_jobs/tests/weather_models/test_interpolate.py +++ b/backend/packages/wps-jobs/src/tests/weather_models/test_interpolate.py @@ -1,5 +1,5 @@ import pytest -from wps_jobs.weather_model_jobs.utils.interpolate import ( +from weather_model_jobs.utils.interpolate import ( construct_interpolated_noon_prediction, SCALAR_MODEL_VALUE_KEYS_FOR_INTERPOLATION, interpolate_between_two_points, @@ -14,9 +14,16 @@ prediction_b_timestamp = datetime(2024, 5, 1, 21, 0, 0) -def generate_model_run_prediction(prediction_datetime: datetime, weather_values: float) -> ModelRunPrediction: +def generate_model_run_prediction( + prediction_datetime: datetime, weather_values: float +) -> ModelRunPrediction: model_prediction = ModelRunPrediction( - prediction_timestamp=prediction_datetime, tmp_tgl_2=weather_values, rh_tgl_2=weather_values, apcp_sfc_0=weather_values, wind_tgl_10=weather_values, wdir_tgl_10=weather_values + prediction_timestamp=prediction_datetime, + tmp_tgl_2=weather_values, + rh_tgl_2=weather_values, + apcp_sfc_0=weather_values, + wind_tgl_10=weather_values, + wdir_tgl_10=weather_values, ) return model_prediction @@ -26,7 +33,9 @@ def test_construct_interpolated_noon_prediction(): prediction_b = generate_model_run_prediction(prediction_b_timestamp, 4.0) linear_interp_val = 3.0 - noon_prediction = construct_interpolated_noon_prediction(prediction_a, prediction_b, SCALAR_MODEL_VALUE_KEYS_FOR_INTERPOLATION) + noon_prediction = construct_interpolated_noon_prediction( + prediction_a, prediction_b, SCALAR_MODEL_VALUE_KEYS_FOR_INTERPOLATION + ) assert noon_prediction.prediction_timestamp.hour == 20 assert math.isclose(noon_prediction.apcp_sfc_0, linear_interp_val, abs_tol=0) assert math.isclose(noon_prediction.rh_tgl_2, linear_interp_val, abs_tol=0) @@ -39,7 +48,9 @@ def test_construct_interpolated_noon_prediction_empty(): prediction_a = generate_model_run_prediction(prediction_a_timestamp, None) prediction_b = generate_model_run_prediction(prediction_b_timestamp, None) - noon_prediction = construct_interpolated_noon_prediction(prediction_a, prediction_b, SCALAR_MODEL_VALUE_KEYS_FOR_INTERPOLATION) + noon_prediction = construct_interpolated_noon_prediction( + prediction_a, prediction_b, SCALAR_MODEL_VALUE_KEYS_FOR_INTERPOLATION + ) assert noon_prediction.prediction_timestamp.hour == 20 assert noon_prediction.apcp_sfc_0 is None assert noon_prediction.rh_tgl_2 is None @@ -72,4 +83,7 @@ def test_interpolate_between_two_points_with_none(): def test_empty_wind_direction_interpolation(wdir_a, wdir_b): prediction_a = generate_model_run_prediction(datetime(2024, 5, 1, 18, 0, 0), wdir_a) prediction_b = generate_model_run_prediction(datetime(2024, 5, 1, 18, 0, 0), wdir_b) - assert interpolate_wind_direction(prediction_a, prediction_b, datetime(2024, 5, 1, 18, 0, 0)) is None + assert ( + interpolate_wind_direction(prediction_a, prediction_b, datetime(2024, 5, 1, 18, 0, 0)) + is None + ) diff --git a/wps_jobs/tests/weather_models/test_interpolate_bearings.py b/backend/packages/wps-jobs/src/tests/weather_models/test_interpolate_bearings.py similarity index 90% rename from wps_jobs/tests/weather_models/test_interpolate_bearings.py rename to backend/packages/wps-jobs/src/tests/weather_models/test_interpolate_bearings.py index 2ede37891a..c67a233b7f 100644 --- a/wps_jobs/tests/weather_models/test_interpolate_bearings.py +++ b/backend/packages/wps-jobs/src/tests/weather_models/test_interpolate_bearings.py @@ -1,11 +1,12 @@ import pytest from datetime import datetime -from wps_jobs.weather_model_jobs.utils.interpolate import interpolate_bearing +from weather_model_jobs.utils.interpolate import interpolate_bearing time_a = datetime.fromisoformat("2020-09-03T18:00:00.000000+00:00") time_b = datetime.fromisoformat("2020-09-03T21:00:00.000000+00:00") target_time = datetime.fromisoformat("2020-09-03T20:00:00.000000+00:00") + @pytest.mark.parametrize( "direction_a,direction_b,result", [ @@ -23,7 +24,7 @@ # Two equal angles (91, 91, 91), # Between two angles that extend past 360 - (300, 60, 20.0) + (300, 60, 20.0), ], ) def test_interpol_b(direction_a, direction_b, result): diff --git a/backend/packages/wps-jobs/src/tests/weather_models/test_machine_learning.py b/backend/packages/wps-jobs/src/tests/weather_models/test_machine_learning.py new file mode 100644 index 0000000000..c5fd359f6e --- /dev/null +++ b/backend/packages/wps-jobs/src/tests/weather_models/test_machine_learning.py @@ -0,0 +1,157 @@ +from datetime import datetime +import pytest +from wps_shared.db.models.observations import HourlyActual +from weather_model_jobs import machine_learning +from tests.weather_models.crud import ( + get_actuals_left_outer_join_with_predictions, + get_accumulated_precip_by_24h_interval, + get_predicted_daily_precip, +) +from wps_shared.db.models.weather_models import ModelRunPrediction, PredictionModel +from weather_model_jobs.machine_learning import StationMachineLearning +import math + + +@pytest.fixture() +def mock_get_actuals_left_outer_join_with_predictions(monkeypatch): + """Mock out call to DB returning actuals macthed with predictions""" + monkeypatch.setattr( + machine_learning, + "get_actuals_left_outer_join_with_predictions", + get_actuals_left_outer_join_with_predictions, + ) + + +@pytest.fixture() +def mock_get_accumulated_precip_by_24h_interval(monkeypatch): + """Mock out call to DB returning actual 24 hour precipitation data""" + monkeypatch.setattr( + machine_learning, + "get_accumulated_precip_by_24h_interval", + get_accumulated_precip_by_24h_interval, + ) + + +@pytest.fixture() +def mock_get_predicted_daily_precip(monkeypatch): + """Mock out call to DB returning modelled/predicted 24 hour precipitation data""" + monkeypatch.setattr(machine_learning, "get_predicted_daily_precip", get_predicted_daily_precip) + + +def test_bias_adjustment_with_samples( + mock_get_actuals_left_outer_join_with_predictions, + mock_get_accumulated_precip_by_24h_interval, + mock_get_predicted_daily_precip, +): + predict_date_with_samples = datetime.fromisoformat("2020-09-03T21:14:51.939836+00:00") + + machine_learner = StationMachineLearning( + session=None, + model=PredictionModel(id=1), + target_coordinate=[-120.4816667, 50.6733333], + station_code=None, + max_learn_date=datetime.now(), + ) + machine_learner.learn() + + temp_result = machine_learner.predict_temperature(20, predict_date_with_samples) + rh_result = machine_learner.predict_rh(50, predict_date_with_samples) + wdir_result = machine_learner.predict_wind_direction(10, 120, predict_date_with_samples) + precip_result = machine_learner.predict_precipitation(3, datetime(2023, 10, 26, 20, 0, 0)) + assert temp_result == 30 + assert rh_result == 100 + assert math.isclose(wdir_result, 115.51556685719027) + assert precip_result == 3 + + +def test_bias_adjustment_of_rh_above_100( + monkeypatch, mock_get_accumulated_precip_by_24h_interval, mock_get_predicted_daily_precip +): + def get_actuals_and_predictions_with_high_rh(*args): + """Two actual/prediction pairs to force a prediction of rh above 100.""" + return [ + [ + HourlyActual( + weather_date=datetime(2020, 10, 10, 18), + temperature=20, + temp_valid=True, + wind_speed=10, + wind_direction=90, + relative_humidity=105, + rh_valid=True, + ), + ModelRunPrediction( + tmp_tgl_2=2, + rh_tgl_2=105, + apcp_sfc_0=2, + wind_tgl_10=11, + wdir_tgl_10=97, + prediction_timestamp=datetime(2020, 10, 10, 18), + ), + ], + [ + HourlyActual( + weather_date=datetime(2020, 10, 10, 21), + temperature=30, + temp_valid=True, + wind_speed=12, + wind_direction=120, + relative_humidity=105, + rh_valid=True, + ), + ModelRunPrediction( + tmp_tgl_2=1, + rh_tgl_2=105, + apcp_sfc_0=3, + wind_tgl_10=11, + wdir_tgl_10=101, + prediction_timestamp=datetime(2020, 10, 10, 21), + ), + ], + ] + + monkeypatch.setattr( + machine_learning, + "get_actuals_left_outer_join_with_predictions", + get_actuals_and_predictions_with_high_rh, + ) + + predict_date_with_samples = datetime.fromisoformat("2020-09-03T21:14:51.939836+00:00") + + machine_learner = StationMachineLearning( + session=None, + model=PredictionModel(id=1), + target_coordinate=[-120.4816667, 50.6733333], + station_code=None, + max_learn_date=datetime.now(), + ) + machine_learner.learn() + + rh_result = machine_learner.predict_rh(105, predict_date_with_samples) + assert rh_result == 100 + + +def test_bias_adjustment_without_samples( + mock_get_actuals_left_outer_join_with_predictions, + mock_get_accumulated_precip_by_24h_interval, + mock_get_predicted_daily_precip, +): + predict_date_without_samples = datetime.fromisoformat("2020-09-03T01:14:51.939836+00:00") + + machine_learner = StationMachineLearning( + session=None, + model=PredictionModel(id=1), + target_coordinate=[-120.4816667, 50.6733333], + station_code=None, + max_learn_date=datetime.now(), + ) + machine_learner.learn() + + temp_result = machine_learner.predict_temperature(20, predict_date_without_samples) + rh_result = machine_learner.predict_rh(50, predict_date_without_samples) + wdir_result = machine_learner.predict_wind_direction(10, 290, predict_date_without_samples) + precip_result = machine_learner.predict_precipitation(3, predict_date_without_samples) + assert temp_result is None + assert rh_result is None + assert wdir_result is None + assert precip_result is None diff --git a/wps_jobs/tests/weather_models/test_models_common.py b/backend/packages/wps-jobs/src/tests/weather_models/test_models_common.py similarity index 100% rename from wps_jobs/tests/weather_models/test_models_common.py rename to backend/packages/wps-jobs/src/tests/weather_models/test_models_common.py diff --git a/backend/packages/wps-jobs/src/tests/weather_models/test_noaa_gfs.py b/backend/packages/wps-jobs/src/tests/weather_models/test_noaa_gfs.py new file mode 100644 index 0000000000..c7e6672ab3 --- /dev/null +++ b/backend/packages/wps-jobs/src/tests/weather_models/test_noaa_gfs.py @@ -0,0 +1,236 @@ +"""Unit tests for app/jobs/noaa.py""" + +import os +import logging +from datetime import datetime, timezone +from tests.weather_models.test_models_common import ( + MockResponse, + shape, + mock_get_model_run_predictions, +) +import pytest +import requests +from geoalchemy2.shape import from_shape +from weather_model_jobs import common_model_fetchers +import wps_shared.db.crud.weather_models +from wps_shared.db.models.weather_models import ( + PredictionModel, + PredictionModelGridSubset, + PredictionModelRunTimestamp, + ProcessedModelRunUrl, +) +from weather_model_jobs import noaa +import wps_shared.utils.time as time_utils + + +logger = logging.getLogger(__name__) + + +@pytest.fixture() +def mock_get_model_run_predictions_for_grid(monkeypatch): + """Mock out call to DB returning predictions""" + + monkeypatch.setattr( + common_model_fetchers, "get_model_run_predictions_for_grid", mock_get_model_run_predictions + ) + + +@pytest.fixture() +def mock_database(monkeypatch): + """Mocked out database queries""" + gfs_url = ( + "https://www.ncei.noaa.gov/data/global-forecast-system/access/grid-004-0.5-degree/" + "forecast/202302/20230219/gfs_4_20230219_0600_018.grb2" + ) + gfs_processed_model_run = ProcessedModelRunUrl(url=gfs_url) + gfs_prediction_model = PredictionModel( + id=1, abbreviation="GFS", projection="lonlat.0.25deg", name="Global Forecast System" + ) + gfs_prediction_model_run = PredictionModelRunTimestamp( + id=1, + prediction_model_id=1, + prediction_run_timestamp=time_utils.get_utc_now(), + prediction_model=gfs_prediction_model, + complete=True, + ) + + def mock_get_gfs_prediction_model_run_timestamp_records(*args, **kwargs): + return [(gfs_prediction_model_run, gfs_prediction_model)] + + def mock_get_processed_file_record(session, url: str): + # We only want the one file to be processed - otherwise our test takes forever + if url != gfs_url: + return gfs_processed_model_run + return None + + def mock_get_grids_for_coordinate(session, prediction_model, coordinate): + return [ + PredictionModelGridSubset( + id=1, prediction_model_id=gfs_prediction_model.id, geom=from_shape(shape) + ), + ] + + def mock_get_prediction_run(*args, **kwargs): + return gfs_prediction_model_run + + monkeypatch.setattr(noaa, "get_processed_file_record", mock_get_processed_file_record) + monkeypatch.setattr( + common_model_fetchers, + "get_prediction_model_run_timestamp_records", + mock_get_gfs_prediction_model_run_timestamp_records, + ) + monkeypatch.setattr( + common_model_fetchers, "get_grids_for_coordinate", mock_get_grids_for_coordinate + ) + monkeypatch.setattr( + wps_shared.db.crud.weather_models, "get_prediction_run", mock_get_prediction_run + ) + + +@pytest.fixture() +def mock_download(monkeypatch): + """fixture for NOAA download""" + + def mock_requests_get_gfs(*args, **kwargs): + """mock common_model_fetchers download method for GFS""" + dirname = os.path.dirname(os.path.realpath(__file__)) + filename = os.path.join(dirname, "gfs_4_20230219_0600_018.grb2") + with open(filename, "rb") as file: + content = file.read() + return MockResponse(status_code=200, content=content) + + monkeypatch.setattr(requests, "get", mock_requests_get_gfs) + + +def test_get_gfs_model_run_download_urls_for_00_utc(): + # March 2 at 00:00 UTC is equivalent to March 1 in Eastern timezone - should return URL for previous day + # for a given date and model run cycle, there should be 2 time intervals * 10 days into future (11 days total) + expected_num_of_urls = 2 * 11 + actual_urls = list( + noaa.get_gfs_model_run_download_urls(datetime(2023, 3, 2, 00, tzinfo=timezone.utc), "00") + ) + assert len(actual_urls) == expected_num_of_urls + assert ( + actual_urls[0] + == noaa.GFS_BASE_URL + + "dir=%2Fgfs.20230301%2F00%2Fatmos&file=gfs.t00z.pgrb2.0p25.f018&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48" + ) + assert ( + actual_urls[-1] + == noaa.GFS_BASE_URL + + "dir=%2Fgfs.20230301%2F00%2Fatmos&file=gfs.t00z.pgrb2.0p25.f261&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48" + ) + + +def test_get_gfs_model_run_download_urls_for_06_utc(): + # Feb 15 at 06:00 UTC is still Feb 15 (at 02:00) in Eastern timezone - should return URL for same day + # for a given date and model run cycle, there should be 2 time intervals * 10 days into future (11 days total incl. today) + expected_num_of_urls = 2 * 11 + actual_urls = list( + noaa.get_gfs_model_run_download_urls(datetime(2023, 2, 15, 6, tzinfo=timezone.utc), "06") + ) + assert len(actual_urls) == expected_num_of_urls + assert ( + actual_urls[0] + == noaa.GFS_BASE_URL + + "dir=%2Fgfs.20230215%2F06%2Fatmos&file=gfs.t06z.pgrb2.0p25.f012&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48" + ) + assert ( + actual_urls[1] + == noaa.GFS_BASE_URL + + "dir=%2Fgfs.20230215%2F06%2Fatmos&file=gfs.t06z.pgrb2.0p25.f015&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48" + ) + assert ( + actual_urls[-1] + == noaa.GFS_BASE_URL + + "dir=%2Fgfs.20230215%2F06%2Fatmos&file=gfs.t06z.pgrb2.0p25.f255&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48" + ) + + +def test_get_gfs_model_run_download_urls_for_12_utc(): + # March 9 at 12:00 UTC is still March 9 in Eastern timezone - should return URL for same day + # for a given date and model run cycle, there should be 2 time intervals * 10 days into future (11 days total incl. today) + expected_num_of_urls = 2 * 11 + actual_urls = list( + noaa.get_gfs_model_run_download_urls(datetime(2023, 3, 9, 12, tzinfo=timezone.utc), "12") + ) + assert len(actual_urls) == expected_num_of_urls + assert ( + actual_urls[0] + == noaa.GFS_BASE_URL + + "dir=%2Fgfs.20230309%2F12%2Fatmos&file=gfs.t12z.pgrb2.0p25.f006&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48" + ) + assert ( + actual_urls[1] + == noaa.GFS_BASE_URL + + "dir=%2Fgfs.20230309%2F12%2Fatmos&file=gfs.t12z.pgrb2.0p25.f009&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48" + ) + assert ( + actual_urls[-1] + == noaa.GFS_BASE_URL + + "dir=%2Fgfs.20230309%2F12%2Fatmos&file=gfs.t12z.pgrb2.0p25.f249&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48" + ) + + +def test_get_gfs_model_run_download_urls_for_18_utc(): + # Jan 27 at 18:00 UTC is still Jan 27 in Eastern timezone - should return URL for same day + # for a given date and model run cycle, there should be 2 time intervals * 10 days into future (11 days total incl. today) + expected_num_of_urls = 2 * 11 + actual_urls = list( + noaa.get_gfs_model_run_download_urls(datetime(2023, 1, 27, 18, tzinfo=timezone.utc), "18") + ) + assert len(actual_urls) == expected_num_of_urls + assert ( + actual_urls[0] + == noaa.GFS_BASE_URL + + "dir=%2Fgfs.20230127%2F18%2Fatmos&file=gfs.t18z.pgrb2.0p25.f000&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48" + ) + assert ( + actual_urls[1] + == noaa.GFS_BASE_URL + + "dir=%2Fgfs.20230127%2F18%2Fatmos&file=gfs.t18z.pgrb2.0p25.f003&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48" + ) + assert ( + actual_urls[-1] + == noaa.GFS_BASE_URL + + "dir=%2Fgfs.20230127%2F18%2Fatmos&file=gfs.t18z.pgrb2.0p25.f243&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48" + ) + + +def test_parse_url_for_timestamps_simple(): + """simple test case for noaa.parse_url_for_timestamps(): model_run_timestamp and prediction_timestamp + are on the same day""" + url = "https://nomads.ncep.noaa.gov/cgi-bin/filter_gfs_0p25.pl?dir=%2Fgfs.20230413%2F12%2Fatmos&file=gfs.t12z.pgrb2.0p25.f006&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48" + expected_model_run_timestamp = datetime(2023, 4, 13, 12, 0, tzinfo=timezone.utc) + expected_prediction_timestamp = datetime(2023, 4, 13, 18, 0, tzinfo=timezone.utc) + actual_model_run_timestamp, actual_prediction_timestamp = noaa.parse_gfs_url_for_timestamps(url) + assert expected_model_run_timestamp == actual_model_run_timestamp + assert expected_prediction_timestamp == actual_prediction_timestamp + + +def test_parse_url_for_timestamps_complex(): + """more complex test case for noaa.parse_url_for_timestamps(): model_run_timestamp and + prediction_timestamp are on different days""" + url = "https://nomads.ncep.noaa.gov/cgi-bin/filter_gfs_0p25.pl?dir=%2Fgfs.20230413%2F18%2Fatmos&file=gfs.t18z.pgrb2.0p25.f243&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48" + expected_model_run_timestamp = datetime(2023, 4, 13, 18, 0, tzinfo=timezone.utc) + expected_prediction_timestamp = datetime(2023, 4, 23, 21, 0, tzinfo=timezone.utc) + actual_model_run_timestamp, actual_prediction_timestamp = noaa.parse_gfs_url_for_timestamps(url) + assert expected_model_run_timestamp == actual_model_run_timestamp + assert expected_prediction_timestamp == actual_prediction_timestamp + + +def test_get_year_mo_date_string_from_datetime(): + test_cases = [ + { + "date": datetime(2023, 2, 14, 0, tzinfo=timezone.utc), + "expected_year_mo_date": "20230214", + }, + {"date": datetime(2023, 6, 5, 0, tzinfo=timezone.utc), "expected_year_mo_date": "20230605"}, + { + "date": datetime(2023, 10, 31, 20, tzinfo=timezone.utc), + "expected_year_mo_date": "20231031", + }, + ] + for test in test_cases: + actual_string = noaa.get_year_mo_date_string_from_datetime(test.get("date")) + assert test.get("expected_year_mo_date") == actual_string diff --git a/backend/packages/wps-jobs/src/tests/weather_models/test_noaa_nam.py b/backend/packages/wps-jobs/src/tests/weather_models/test_noaa_nam.py new file mode 100644 index 0000000000..831a759134 --- /dev/null +++ b/backend/packages/wps-jobs/src/tests/weather_models/test_noaa_nam.py @@ -0,0 +1,134 @@ +"""Unit tests for app/jobs/noaa.py""" + +import logging +from datetime import datetime, timezone +from weather_model_jobs import noaa + + +logger = logging.getLogger(__name__) + + +def test_get_nam_model_run_download_urls_for_00_utc(): + # March 2 at 00:00 UTC is equivalent to March 1 in Eastern timezone - should return URL for previous day + # for the 00 UTC run, there should be 13 urls (for hours 0, 12, 18, 20, 21, 24, 36, 42, 45, 48, 60, 66, 69) + expected_num_of_urls = 13 + actual_urls = list( + noaa.get_nam_model_run_download_urls(datetime(2023, 3, 2, 00, tzinfo=timezone.utc), "00") + ) + assert len(actual_urls) == expected_num_of_urls + assert ( + actual_urls[0] + == noaa.NAM_BASE_URL + + "dir=%2Fnam.20230301&file=nam.t00z.awphys00.tm00.grib2&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48" + ) + assert ( + actual_urls[-1] + == noaa.NAM_BASE_URL + + "dir=%2Fnam.20230301&file=nam.t00z.awphys69.tm00.grib2&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48" + ) + + +def test_get_nam_model_run_download_urls_for_06_utc(): + # Feb 15 at 06:00 UTC is still Feb 15 (at 02:00) in Eastern timezone - should return URL for same day + # for the 06 UTC run, there should be 24 urls (for hours 0, 3, 6, 9, 12, 14, 15, 18, 21, 24, 27, 30, 33, 36, 39, 42, + # 45, 48, 51, 54, 57, 60, 63, 66) + expected_num_of_urls = 24 + actual_urls = list( + noaa.get_nam_model_run_download_urls(datetime(2023, 2, 15, 6, tzinfo=timezone.utc), "06") + ) + assert len(actual_urls) == expected_num_of_urls + assert ( + actual_urls[0] + == noaa.NAM_BASE_URL + + "dir=%2Fnam.20230215&file=nam.t06z.awphys00.tm00.grib2&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48" + ) + assert ( + actual_urls[1] + == noaa.NAM_BASE_URL + + "dir=%2Fnam.20230215&file=nam.t06z.awphys03.tm00.grib2&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48" + ) + assert ( + actual_urls[-1] + == noaa.NAM_BASE_URL + + "dir=%2Fnam.20230215&file=nam.t06z.awphys66.tm00.grib2&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48" + ) + + +def test_get_nam_model_run_download_urls_for_12_utc(): + # March 9 at 12:00 UTC is still March 9 in Eastern timezone - should return URL for same day + # for the 12 UTC run, there should be 17 urls (for hours 0, 6, 8, 9, 12, 24, 30, 32, 33, 36, 48, 54, 57, 60, 72, 78, + # 81) + expected_num_of_urls = 17 + actual_urls = list( + noaa.get_nam_model_run_download_urls(datetime(2023, 3, 9, 12, tzinfo=timezone.utc), "12") + ) + assert len(actual_urls) == expected_num_of_urls + assert ( + actual_urls[0] + == noaa.NAM_BASE_URL + + "dir=%2Fnam.20230309&file=nam.t12z.awphys00.tm00.grib2&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48" + ) + assert ( + actual_urls[1] + == noaa.NAM_BASE_URL + + "dir=%2Fnam.20230309&file=nam.t12z.awphys06.tm00.grib2&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48" + ) + assert ( + actual_urls[-1] + == noaa.NAM_BASE_URL + + "dir=%2Fnam.20230309&file=nam.t12z.awphys81.tm00.grib2&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48" + ) + + +def test_get_nam_model_run_download_urls_for_18_utc(): + # Jan 27 at 18:00 UTC is still Jan 27 in Eastern timezone - should return URL for same day + # for the 18 UTC run, there should be 28 urls (for hours 0, 2, 3, 6, 9, 12, 15, 18, 21, 24, 26, 27, 30, 33, 36, 39, + # 42, 45, 48, 51, 54, 57, 60, 63, 66, 69, 72, 75) + expected_num_of_urls = 28 + actual_urls = list( + noaa.get_nam_model_run_download_urls(datetime(2023, 1, 27, 18, tzinfo=timezone.utc), "18") + ) + assert len(actual_urls) == expected_num_of_urls + assert ( + actual_urls[0] + == noaa.NAM_BASE_URL + + "dir=%2Fnam.20230127&file=nam.t18z.awphys00.tm00.grib2&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48" + ) + assert ( + actual_urls[1] + == noaa.NAM_BASE_URL + + "dir=%2Fnam.20230127&file=nam.t18z.awphys02.tm00.grib2&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48" + ) + assert ( + actual_urls[-1] + == noaa.NAM_BASE_URL + + "dir=%2Fnam.20230127&file=nam.t18z.awphys75.tm00.grib2&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48" + ) + + +def test_parse_url_for_timestamps_simple(): + """simple test case for noaa.parse_url_for_timestamps(): model_run_timestamp and prediction_timestamp + are on the same day""" + url = ( + noaa.NAM_BASE_URL + + "dir=%2Fnam.20230413&file=nam.t12z.awphys06.tm00.grib2&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48" + ) + expected_model_run_timestamp = datetime(2023, 4, 13, 12, 0, tzinfo=timezone.utc) + expected_prediction_timestamp = datetime(2023, 4, 13, 18, 0, tzinfo=timezone.utc) + actual_model_run_timestamp, actual_prediction_timestamp = noaa.parse_nam_url_for_timestamps(url) + assert expected_model_run_timestamp == actual_model_run_timestamp + assert expected_prediction_timestamp == actual_prediction_timestamp + + +def test_parse_url_for_timestamps_complex(): + """more complex test case for noaa.parse_url_for_timestamps(): model_run_timestamp and + prediction_timestamp are on different days""" + url = ( + noaa.NAM_BASE_URL + + "dir=%2Fnam.20230413&file=nam.t18z.awphys27.grib2&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48" + ) + expected_model_run_timestamp = datetime(2023, 4, 13, 18, 0, tzinfo=timezone.utc) + expected_prediction_timestamp = datetime(2023, 4, 14, 21, 0, tzinfo=timezone.utc) + actual_model_run_timestamp, actual_prediction_timestamp = noaa.parse_nam_url_for_timestamps(url) + assert expected_model_run_timestamp == actual_model_run_timestamp + assert expected_prediction_timestamp == actual_prediction_timestamp diff --git a/wps_jobs/tests/weather_models/test_parse_env_canada_filename.py b/backend/packages/wps-jobs/src/tests/weather_models/test_parse_env_canada_filename.py similarity index 59% rename from wps_jobs/tests/weather_models/test_parse_env_canada_filename.py rename to backend/packages/wps-jobs/src/tests/weather_models/test_parse_env_canada_filename.py index 4b7bf7c8de..3ad88e9df7 100644 --- a/wps_jobs/tests/weather_models/test_parse_env_canada_filename.py +++ b/backend/packages/wps-jobs/src/tests/weather_models/test_parse_env_canada_filename.py @@ -2,7 +2,7 @@ import logging import pytest -from wps_jobs.weather_model_jobs.env_canada import parse_env_canada_filename +from weather_model_jobs.env_canada import parse_env_canada_filename logger = logging.getLogger(__name__) @@ -11,10 +11,22 @@ "filename,projection,variable_name", [ ("CMC_glb_TMP_TGL_2_latlon.24x.24_2020070212_P240.grib2", "latlon.24x.24", "TMP_TGL_2"), - ("CMC_glb_ABSV_ISBL_200_latlon.24x.24_2020070600_P000.grib2", "latlon.24x.24", "ABSV_ISBL_200"), - ("CMC_glb_ABSV_ISBL_200_latlon.15x.15_2020070600_P000.grib2", "latlon.15x.15", "ABSV_ISBL_200"), + ( + "CMC_glb_ABSV_ISBL_200_latlon.24x.24_2020070600_P000.grib2", + "latlon.24x.24", + "ABSV_ISBL_200", + ), + ( + "CMC_glb_ABSV_ISBL_200_latlon.15x.15_2020070600_P000.grib2", + "latlon.15x.15", + "ABSV_ISBL_200", + ), ("CMC_glb_RH_TGL_2_latlon.15x.15_2020070712_P000.grib2", "latlon.15x.15", "RH_TGL_2"), - ("/somewhere_on/the_drive/CMC_glb_RH_TGL_2_latlon.15x.15_2020070712_P000.grib2", "latlon.15x.15", "RH_TGL_2"), + ( + "/somewhere_on/the_drive/CMC_glb_RH_TGL_2_latlon.15x.15_2020070712_P000.grib2", + "latlon.15x.15", + "RH_TGL_2", + ), ], ) def test_parse_filename(filename, projection, variable_name): diff --git a/wps_jobs/tests/weather_models/test_process_grib.py b/backend/packages/wps-jobs/src/tests/weather_models/test_process_grib.py similarity index 79% rename from wps_jobs/tests/weather_models/test_process_grib.py rename to backend/packages/wps-jobs/src/tests/weather_models/test_process_grib.py index 5361da7393..3f6f62ab4d 100644 --- a/wps_jobs/tests/weather_models/test_process_grib.py +++ b/backend/packages/wps-jobs/src/tests/weather_models/test_process_grib.py @@ -6,13 +6,15 @@ import pytest from wps_shared.geospatial.geospatial import NAD83_CRS from wps_shared.tests.common import default_mock_client_get -from wps_jobs.weather_model_jobs.utils import process_grib +from weather_model_jobs.utils import process_grib def test_convert_mps_to_kph(): metres_per_second_speed = 1 kilometres_per_hour_speed = process_grib.convert_mps_to_kph(metres_per_second_speed) - assert math.isclose(kilometres_per_hour_speed, 3.6, abs_tol=0.1) # 1m/s * 3600 sec/hour / 1000m/km + assert math.isclose( + kilometres_per_hour_speed, 3.6, abs_tol=0.1 + ) # 1m/s * 3600 sec/hour / 1000m/km def test_convert_mps_to_kph_zero_wind_speed(): @@ -26,7 +28,9 @@ def test_read_single_raster_value(monkeypatch: pytest.MonkeyPatch): Verified with gdallocationinfo CMC_reg_RH_TGL_2_ps10km_2020110500_P034.grib2 -wgs84 -120.4816667 50.6733333 """ monkeypatch.setattr(ClientSession, "get", default_mock_client_get) - filename = os.path.join(os.path.dirname(__file__), "CMC_reg_RH_TGL_2_ps10km_2020110500_P034.grib2") + filename = os.path.join( + os.path.dirname(__file__), "CMC_reg_RH_TGL_2_ps10km_2020110500_P034.grib2" + ) dataset = gdal.Open(filename, gdal.GA_ReadOnly) # Ensure that grib file uses EPSG:4269 (NAD83) coordinate system @@ -37,7 +41,9 @@ def test_read_single_raster_value(monkeypatch: pytest.MonkeyPatch): geo_to_raster_transformer = process_grib.get_transformer(NAD83_CRS, crs) padf_transform = process_grib.get_dataset_transform(filename) - processor = process_grib.GribFileProcessor(padf_transform, raster_to_geo_transformer, geo_to_raster_transformer) + processor = process_grib.GribFileProcessor( + padf_transform, raster_to_geo_transformer, geo_to_raster_transformer + ) raster_band = dataset.GetRasterBand(1) station, value = next(processor.yield_value_for_stations(raster_band)) diff --git a/wps_jobs/tests/weather_models/test_regression_model.py b/backend/packages/wps-jobs/src/tests/weather_models/test_regression_model.py similarity index 70% rename from wps_jobs/tests/weather_models/test_regression_model.py rename to backend/packages/wps-jobs/src/tests/weather_models/test_regression_model.py index 6aa1bff90e..4fee95a729 100644 --- a/wps_jobs/tests/weather_models/test_regression_model.py +++ b/backend/packages/wps-jobs/src/tests/weather_models/test_regression_model.py @@ -3,9 +3,9 @@ from pytest_mock import MockerFixture from wps_shared.db.models.observations import HourlyActual from wps_shared.db.models.weather_models import ModelRunPrediction -from wps_jobs.weather_model_jobs.utils.linear_model import LinearModel -from wps_jobs.weather_model_jobs.utils.regression_model import RegressionModel -from wps_jobs.weather_model_jobs.utils.sample import Samples +from weather_model_jobs.utils.linear_model import LinearModel +from weather_model_jobs.utils.regression_model import RegressionModel +from weather_model_jobs.utils.sample import Samples @pytest.mark.parametrize( @@ -13,37 +13,32 @@ [ # Happy path ( - HourlyActual(weather_date=datetime(2020, 10, 10, 18), - temperature=15), + HourlyActual(weather_date=datetime(2020, 10, 10, 18), temperature=15), ModelRunPrediction(tmp_tgl_2=10), - 1 + 1, ), # No actual data ( HourlyActual(weather_date=datetime(2020, 10, 10, 18)), ModelRunPrediction(tmp_tgl_2=10), - 0 + 0, ), # No prediction data ( - HourlyActual( - weather_date=datetime(2020, 10, 10, 18), - temperature=15), + HourlyActual(weather_date=datetime(2020, 10, 10, 18), temperature=15), ModelRunPrediction(), - 0 + 0, ), # No actual or prediction data - ( - HourlyActual(weather_date=datetime(2020, 10, 10, 18)), - ModelRunPrediction(), - 0 - ) + (HourlyActual(weather_date=datetime(2020, 10, 10, 18)), ModelRunPrediction(), 0), ], ) def test_regression_model_sample_calls(mocker: MockerFixture, actual, prediction, call_count): mock_linear_model = LinearModel(samples=Samples()) append_x_y_mock = mocker.patch.object(mock_linear_model, "append_x_y") - regression_model = RegressionModel(model_key=ModelRunPrediction.tmp_tgl_2.name, linear_model=mock_linear_model) + regression_model = RegressionModel( + model_key=ModelRunPrediction.tmp_tgl_2.name, linear_model=mock_linear_model + ) regression_model.add_sample(prediction, actual) @@ -53,7 +48,7 @@ def test_regression_model_sample_calls(mocker: MockerFixture, actual, prediction def test_regression_model_train(mocker: MockerFixture): mock_linear_model = LinearModel(samples=Samples()) append_x_y_mock = mocker.patch.object(mock_linear_model, "train") - regression_model = RegressionModel(model_key='test', linear_model=mock_linear_model) + regression_model = RegressionModel(model_key="test", linear_model=mock_linear_model) regression_model.train() @@ -63,7 +58,7 @@ def test_regression_model_train(mocker: MockerFixture): def test_regression_model_predict(mocker: MockerFixture): mock_linear_model = LinearModel(samples=Samples()) append_x_y_mock = mocker.patch.object(mock_linear_model, "predict") - regression_model = RegressionModel(model_key='test', linear_model=mock_linear_model) + regression_model = RegressionModel(model_key="test", linear_model=mock_linear_model) regression_model.predict(0, [[0, 0]]) diff --git a/wps_jobs/tests/weather_models/test_utils.py b/backend/packages/wps-jobs/src/tests/weather_models/test_utils.py similarity index 82% rename from wps_jobs/tests/weather_models/test_utils.py rename to backend/packages/wps-jobs/src/tests/weather_models/test_utils.py index 0fdcbfe3bd..f5eb1bcd6a 100644 --- a/wps_jobs/tests/weather_models/test_utils.py +++ b/backend/packages/wps-jobs/src/tests/weather_models/test_utils.py @@ -1,4 +1,4 @@ -from wps_jobs.weather_model_jobs.utils.utils import construct_dictionary_from_list_by_property +from weather_model_jobs.utils.utils import construct_dictionary_from_list_by_property class TestObject: @@ -25,4 +25,4 @@ def test_construct_dictionary_from_list_by_property(): assert len(result["bar"]) == 1 assert object_1 in result["foo"] assert object_2 in result["bar"] - assert object_3 in result["foo"] \ No newline at end of file + assert object_3 in result["foo"] diff --git a/wps_jobs/tests/weather_models/test_wind_direction_model.py b/backend/packages/wps-jobs/src/tests/weather_models/test_wind_direction_model.py similarity index 71% rename from wps_jobs/tests/weather_models/test_wind_direction_model.py rename to backend/packages/wps-jobs/src/tests/weather_models/test_wind_direction_model.py index 366aecbe21..6d459f6cfc 100644 --- a/wps_jobs/tests/weather_models/test_wind_direction_model.py +++ b/backend/packages/wps-jobs/src/tests/weather_models/test_wind_direction_model.py @@ -1,13 +1,11 @@ - - import pytest from datetime import datetime from pytest_mock import MockerFixture from wps_shared.db.models.observations import HourlyActual from wps_shared.db.models.weather_models import ModelRunPrediction -from wps_jobs.weather_model_jobs.utils.linear_model import LinearModel -from wps_jobs.weather_model_jobs.utils.sample import Samples -from wps_jobs.weather_model_jobs.utils.wind_direction_model import WindDirectionModel +from weather_model_jobs.utils.linear_model import LinearModel +from weather_model_jobs.utils.sample import Samples +from weather_model_jobs.utils.wind_direction_model import WindDirectionModel @pytest.mark.parametrize( @@ -15,61 +13,47 @@ [ # Happy path ( - HourlyActual(weather_date=datetime(2020, 10, 10, 18), - wind_speed=15, - wind_direction=90), - ModelRunPrediction(wind_tgl_10=10, - wdir_tgl_10=97), - 1 + HourlyActual(weather_date=datetime(2020, 10, 10, 18), wind_speed=15, wind_direction=90), + ModelRunPrediction(wind_tgl_10=10, wdir_tgl_10=97), + 1, ), # No actual data ( HourlyActual(weather_date=datetime(2020, 10, 10, 18)), - ModelRunPrediction(wind_tgl_10=10, - wdir_tgl_10=97), - 0 + ModelRunPrediction(wind_tgl_10=10, wdir_tgl_10=97), + 0, ), # No prediction data ( - HourlyActual( - weather_date=datetime(2020, 10, 10, 18), - wind_speed=15, - wind_direction=90), + HourlyActual(weather_date=datetime(2020, 10, 10, 18), wind_speed=15, wind_direction=90), ModelRunPrediction(), - 0 + 0, ), # No actual or prediction data - ( - HourlyActual(weather_date=datetime(2020, 10, 10, 18)), - ModelRunPrediction(), - 0 - ), + (HourlyActual(weather_date=datetime(2020, 10, 10, 18)), ModelRunPrediction(), 0), # Only windspeed for actual ( HourlyActual(weather_date=datetime(2020, 10, 10, 18), wind_speed=10), - ModelRunPrediction(wind_tgl_10=10, - wdir_tgl_10=97), - 0 + ModelRunPrediction(wind_tgl_10=10, wdir_tgl_10=97), + 0, ), # Only wind direction for actual ( HourlyActual(weather_date=datetime(2020, 10, 10, 18), wind_direction=10), - ModelRunPrediction(wind_tgl_10=10, - wdir_tgl_10=97), - 0 + ModelRunPrediction(wind_tgl_10=10, wdir_tgl_10=97), + 0, ), # Only windspeed for prediction ( HourlyActual(weather_date=datetime(2020, 10, 10, 18), wind_speed=10, wind_direction=90), ModelRunPrediction(wind_tgl_10=10), - 0 + 0, ), - # Only wind direction for prediction ( HourlyActual(weather_date=datetime(2020, 10, 10, 18), wind_speed=10, wind_direction=90), ModelRunPrediction(wdir_tgl_10=97), - 0 + 0, ), ], ) diff --git a/wps_jobs/tests/weather_models/test_wind_direction_utils.py b/backend/packages/wps-jobs/src/tests/weather_models/test_wind_direction_utils.py similarity index 83% rename from wps_jobs/tests/weather_models/test_wind_direction_utils.py rename to backend/packages/wps-jobs/src/tests/weather_models/test_wind_direction_utils.py index 97d15dc1e9..5c4040ed17 100644 --- a/wps_jobs/tests/weather_models/test_wind_direction_utils.py +++ b/backend/packages/wps-jobs/src/tests/weather_models/test_wind_direction_utils.py @@ -1,19 +1,15 @@ - import math import pytest -from wps_jobs.weather_model_jobs.utils.wind_direction_utils import compute_u_v, calculate_wind_dir_from_u_v, calculate_wind_speed_from_u_v +from weather_model_jobs.utils.wind_direction_utils import ( + compute_u_v, + calculate_wind_dir_from_u_v, + calculate_wind_speed_from_u_v, +) @pytest.mark.parametrize( "wind_direction_deg,wind_speed", - [ - (290, 10), - (360, 10), - (0, 10), - (90, 10), - (46.7, 10), - (290, 23.2) - ], + [(290, 10), (360, 10), (0, 10), (90, 10), (46.7, 10), (290, 23.2)], ) def test_compute_u_v(wind_direction_deg, wind_speed): """ diff --git a/wps_jobs/wps_jobs/weather_model_jobs/__init__.py b/backend/packages/wps-jobs/src/weather_model_jobs/__init__.py similarity index 100% rename from wps_jobs/wps_jobs/weather_model_jobs/__init__.py rename to backend/packages/wps-jobs/src/weather_model_jobs/__init__.py diff --git a/wps_jobs/wps_jobs/weather_model_jobs/common_model_fetchers.py b/backend/packages/wps-jobs/src/weather_model_jobs/common_model_fetchers.py similarity index 99% rename from wps_jobs/wps_jobs/weather_model_jobs/common_model_fetchers.py rename to backend/packages/wps-jobs/src/weather_model_jobs/common_model_fetchers.py index 9f6f0c791b..5587b1ddb9 100644 --- a/wps_jobs/wps_jobs/weather_model_jobs/common_model_fetchers.py +++ b/backend/packages/wps-jobs/src/weather_model_jobs/common_model_fetchers.py @@ -1,7 +1,7 @@ from typing import List import logging import numpy -from datetime import datetime, timedelta, timezone +from datetime import datetime, timedelta from pyproj import Geod import numpy as np from sqlalchemy.orm import Session @@ -14,11 +14,11 @@ get_weather_station_model_prediction, delete_model_run_predictions, ) -from wps_jobs.weather_model_jobs.utils.interpolate import ( +from weather_model_jobs.utils.interpolate import ( construct_interpolated_noon_prediction, interpolate_between_two_points, ) -from wps_jobs.weather_model_jobs.machine_learning import StationMachineLearning +from weather_model_jobs.machine_learning import StationMachineLearning from wps_shared.weather_models import ModelEnum from wps_shared.schemas.stations import WeatherStation from wps_shared.wps_logging import configure_logging diff --git a/wps_jobs/wps_jobs/weather_model_jobs/ecmwf.py b/backend/packages/wps-jobs/src/weather_model_jobs/ecmwf.py similarity index 97% rename from wps_jobs/wps_jobs/weather_model_jobs/ecmwf.py rename to backend/packages/wps-jobs/src/weather_model_jobs/ecmwf.py index 6ed7d5a6af..617e31f9d4 100644 --- a/wps_jobs/wps_jobs/weather_model_jobs/ecmwf.py +++ b/backend/packages/wps-jobs/src/weather_model_jobs/ecmwf.py @@ -18,15 +18,15 @@ from wps_shared.stations import get_stations_asynchronously from wps_shared.db.database import get_write_session_scope from wps_shared.db.crud.model_run_repository import ModelRunRepository -from wps_jobs.weather_model_jobs import ( +from weather_model_jobs import ( ModelEnum, ModelRunInfo, ModelRunProcessResult, ProjectionEnum, ) -from wps_jobs.weather_model_jobs.ecmwf_model_processor import ECMWFModelProcessor, TEMP -from wps_jobs.weather_model_jobs.ecmwf_prediction_processor import ECMWFPredictionProcessor -from wps_jobs.weather_model_jobs.utils.process_grib import PredictionModelNotFound +from weather_model_jobs.ecmwf_model_processor import ECMWFModelProcessor, TEMP +from weather_model_jobs.ecmwf_prediction_processor import ECMWFPredictionProcessor +from weather_model_jobs.utils.process_grib import PredictionModelNotFound from wps_shared.db.models.weather_models import ModelRunPrediction, PredictionModelRunTimestamp gdal.UseExceptions() diff --git a/wps_jobs/wps_jobs/weather_model_jobs/ecmwf_model_processor.py b/backend/packages/wps-jobs/src/weather_model_jobs/ecmwf_model_processor.py similarity index 92% rename from wps_jobs/wps_jobs/weather_model_jobs/ecmwf_model_processor.py rename to backend/packages/wps-jobs/src/weather_model_jobs/ecmwf_model_processor.py index 22514da684..e24cf2b457 100644 --- a/wps_jobs/wps_jobs/weather_model_jobs/ecmwf_model_processor.py +++ b/backend/packages/wps-jobs/src/weather_model_jobs/ecmwf_model_processor.py @@ -3,8 +3,8 @@ import xarray as xr from herbie import Herbie from wps_shared.db.models.weather_models import ModelRunPrediction -from wps_jobs.weather_model_jobs import ModelRunInfo, ModelRunProcessResult -from wps_jobs.weather_model_jobs.utils.process_grib import convert_mps_to_kph, convert_kelvin_to_celsius, calculate_relative_humidity +from weather_model_jobs import ModelRunInfo, ModelRunProcessResult +from weather_model_jobs.utils.process_grib import convert_mps_to_kph, convert_kelvin_to_celsius, calculate_relative_humidity # ECMWF regex search strings TEMP = ":2t:" # Temperature at 2 meters diff --git a/wps_jobs/wps_jobs/weather_model_jobs/ecmwf_prediction_processor.py b/backend/packages/wps-jobs/src/weather_model_jobs/ecmwf_prediction_processor.py similarity index 98% rename from wps_jobs/wps_jobs/weather_model_jobs/ecmwf_prediction_processor.py rename to backend/packages/wps-jobs/src/weather_model_jobs/ecmwf_prediction_processor.py index b6f043ff03..220a987634 100644 --- a/wps_jobs/wps_jobs/weather_model_jobs/ecmwf_prediction_processor.py +++ b/backend/packages/wps-jobs/src/weather_model_jobs/ecmwf_prediction_processor.py @@ -11,9 +11,9 @@ ) from wps_shared.schemas.stations import WeatherStation -from wps_jobs.weather_model_jobs import ModelEnum -from wps_jobs.weather_model_jobs.machine_learning import StationMachineLearning -from wps_jobs.weather_model_jobs.utils.interpolate import ( +from weather_model_jobs import ModelEnum +from weather_model_jobs.machine_learning import StationMachineLearning +from weather_model_jobs.utils.interpolate import ( SCALAR_MODEL_VALUE_KEYS_FOR_INTERPOLATION, construct_interpolated_noon_prediction, interpolate_between_two_points, diff --git a/wps_jobs/wps_jobs/weather_model_jobs/env_canada.py b/backend/packages/wps-jobs/src/weather_model_jobs/env_canada.py similarity index 99% rename from wps_jobs/wps_jobs/weather_model_jobs/env_canada.py rename to backend/packages/wps-jobs/src/weather_model_jobs/env_canada.py index af3eb4baa7..3dd6126511 100644 --- a/wps_jobs/wps_jobs/weather_model_jobs/env_canada.py +++ b/backend/packages/wps-jobs/src/weather_model_jobs/env_canada.py @@ -18,7 +18,7 @@ from wps_shared.weather_models.job_utils import ( get_model_run_urls, ) -from wps_jobs.weather_model_jobs.common_model_fetchers import ( +from weather_model_jobs.common_model_fetchers import ( ModelValueProcessor, apply_data_retention_policy, check_if_model_run_complete, @@ -32,7 +32,7 @@ ) from wps_shared.wps_logging import configure_logging import wps_shared.utils.time as time_utils -from wps_jobs.weather_model_jobs.utils.process_grib import ( +from weather_model_jobs.utils.process_grib import ( GribFileProcessor, ModelRunInfo, ) diff --git a/wps_jobs/wps_jobs/weather_model_jobs/machine_learning.py b/backend/packages/wps-jobs/src/weather_model_jobs/machine_learning.py similarity index 97% rename from wps_jobs/wps_jobs/weather_model_jobs/machine_learning.py rename to backend/packages/wps-jobs/src/weather_model_jobs/machine_learning.py index 180e56c5ef..79202d370c 100644 --- a/wps_jobs/wps_jobs/weather_model_jobs/machine_learning.py +++ b/backend/packages/wps-jobs/src/weather_model_jobs/machine_learning.py @@ -18,13 +18,13 @@ get_actuals_left_outer_join_with_predictions, get_predicted_daily_precip, ) -from wps_jobs.weather_model_jobs.utils.interpolate import ( +from weather_model_jobs.utils.interpolate import ( construct_interpolated_noon_prediction, ) -from wps_jobs.weather_model_jobs.utils.sample import Samples -from wps_jobs.weather_model_jobs.utils.weather_models import RegressionModelsV2 -from wps_jobs.weather_model_jobs.utils.wind_direction_model import compute_u_v -from wps_jobs.weather_model_jobs.utils.wind_direction_utils import ( +from weather_model_jobs.utils.sample import Samples +from weather_model_jobs.utils.weather_models import RegressionModelsV2 +from weather_model_jobs.utils.wind_direction_model import compute_u_v +from weather_model_jobs.utils.wind_direction_utils import ( calculate_wind_dir_from_u_v, ) diff --git a/wps_jobs/wps_jobs/weather_model_jobs/noaa.py b/backend/packages/wps-jobs/src/weather_model_jobs/noaa.py similarity index 99% rename from wps_jobs/wps_jobs/weather_model_jobs/noaa.py rename to backend/packages/wps-jobs/src/weather_model_jobs/noaa.py index 1e5918ddbf..d085796a0e 100644 --- a/wps_jobs/wps_jobs/weather_model_jobs/noaa.py +++ b/backend/packages/wps-jobs/src/weather_model_jobs/noaa.py @@ -15,7 +15,7 @@ get_prediction_run, update_prediction_run, ) -from wps_jobs.weather_model_jobs.common_model_fetchers import ( +from weather_model_jobs.common_model_fetchers import ( ModelValueProcessor, apply_data_retention_policy, check_if_model_run_complete, @@ -29,7 +29,7 @@ ModelEnum, ProjectionEnum, ) -from wps_jobs.weather_model_jobs.utils.process_grib import ( +from weather_model_jobs.utils.process_grib import ( GribFileProcessor, ModelRunInfo, ) diff --git a/api/scripts/percentile_calculator/__init__.py b/backend/packages/wps-jobs/src/weather_model_jobs/utils/__init__.py similarity index 100% rename from api/scripts/percentile_calculator/__init__.py rename to backend/packages/wps-jobs/src/weather_model_jobs/utils/__init__.py diff --git a/wps_jobs/wps_jobs/weather_model_jobs/utils/interpolate.py b/backend/packages/wps-jobs/src/weather_model_jobs/utils/interpolate.py similarity index 100% rename from wps_jobs/wps_jobs/weather_model_jobs/utils/interpolate.py rename to backend/packages/wps-jobs/src/weather_model_jobs/utils/interpolate.py diff --git a/wps_jobs/wps_jobs/weather_model_jobs/utils/linear_model.py b/backend/packages/wps-jobs/src/weather_model_jobs/utils/linear_model.py similarity index 96% rename from wps_jobs/wps_jobs/weather_model_jobs/utils/linear_model.py rename to backend/packages/wps-jobs/src/weather_model_jobs/utils/linear_model.py index 36636126bb..ce4fb44c12 100644 --- a/wps_jobs/wps_jobs/weather_model_jobs/utils/linear_model.py +++ b/backend/packages/wps-jobs/src/weather_model_jobs/utils/linear_model.py @@ -4,7 +4,7 @@ from sklearn.exceptions import NotFittedError from sklearn.linear_model import LinearRegression from collections import defaultdict -from wps_jobs.weather_model_jobs.utils.sample import Samples +from weather_model_jobs.utils.sample import Samples logger = logging.getLogger(__name__) diff --git a/wps_jobs/wps_jobs/weather_model_jobs/utils/precip_model.py b/backend/packages/wps-jobs/src/weather_model_jobs/utils/precip_model.py similarity index 84% rename from wps_jobs/wps_jobs/weather_model_jobs/utils/precip_model.py rename to backend/packages/wps-jobs/src/weather_model_jobs/utils/precip_model.py index 43ad59e055..3b2446560a 100644 --- a/wps_jobs/wps_jobs/weather_model_jobs/utils/precip_model.py +++ b/backend/packages/wps-jobs/src/weather_model_jobs/utils/precip_model.py @@ -1,7 +1,7 @@ import logging from datetime import datetime -from wps_jobs.weather_model_jobs.utils.linear_model import LinearModel -from wps_jobs.weather_model_jobs.utils.regression_model import RegressionModelBase +from weather_model_jobs.utils.linear_model import LinearModel +from weather_model_jobs.utils.regression_model import RegressionModelBase logger = logging.getLogger(__name__) diff --git a/wps_jobs/wps_jobs/weather_model_jobs/utils/process_grib.py b/backend/packages/wps-jobs/src/weather_model_jobs/utils/process_grib.py similarity index 99% rename from wps_jobs/wps_jobs/weather_model_jobs/utils/process_grib.py rename to backend/packages/wps-jobs/src/weather_model_jobs/utils/process_grib.py index 57d9ce395f..d4f4db3554 100644 --- a/wps_jobs/wps_jobs/weather_model_jobs/utils/process_grib.py +++ b/backend/packages/wps-jobs/src/weather_model_jobs/utils/process_grib.py @@ -14,7 +14,7 @@ from wps_shared.db.models.weather_models import ModelRunPrediction, PredictionModel, PredictionModelRunTimestamp from wps_shared.db.crud.weather_models import get_prediction_model, get_or_create_prediction_run from wps_shared.weather_models import ModelEnum, ProjectionEnum -from wps_jobs.weather_model_jobs.utils.wind_direction_utils import calculate_wind_dir_from_u_v, calculate_wind_speed_from_u_v +from weather_model_jobs.utils.wind_direction_utils import calculate_wind_dir_from_u_v, calculate_wind_speed_from_u_v logger = logging.getLogger(__name__) diff --git a/wps_jobs/wps_jobs/weather_model_jobs/utils/regression_model.py b/backend/packages/wps-jobs/src/weather_model_jobs/utils/regression_model.py similarity index 95% rename from wps_jobs/wps_jobs/weather_model_jobs/utils/regression_model.py rename to backend/packages/wps-jobs/src/weather_model_jobs/utils/regression_model.py index 1a8218b178..1424990674 100644 --- a/wps_jobs/wps_jobs/weather_model_jobs/utils/regression_model.py +++ b/backend/packages/wps-jobs/src/weather_model_jobs/utils/regression_model.py @@ -6,8 +6,8 @@ from abc import abstractmethod from wps_shared.db.models.observations import HourlyActual from wps_shared.db.models.weather_models import ModelRunPrediction -from wps_jobs.weather_model_jobs.utils.linear_model import LinearModel -from wps_jobs.weather_model_jobs.utils.sample import Samples +from weather_model_jobs.utils.linear_model import LinearModel +from weather_model_jobs.utils.sample import Samples logger = logging.getLogger(__name__) diff --git a/wps_jobs/wps_jobs/weather_model_jobs/utils/sample.py b/backend/packages/wps-jobs/src/weather_model_jobs/utils/sample.py similarity index 100% rename from wps_jobs/wps_jobs/weather_model_jobs/utils/sample.py rename to backend/packages/wps-jobs/src/weather_model_jobs/utils/sample.py diff --git a/wps_jobs/wps_jobs/weather_model_jobs/utils/utils.py b/backend/packages/wps-jobs/src/weather_model_jobs/utils/utils.py similarity index 100% rename from wps_jobs/wps_jobs/weather_model_jobs/utils/utils.py rename to backend/packages/wps-jobs/src/weather_model_jobs/utils/utils.py diff --git a/wps_jobs/wps_jobs/weather_model_jobs/utils/weather-model-naming.md b/backend/packages/wps-jobs/src/weather_model_jobs/utils/weather-model-naming.md similarity index 100% rename from wps_jobs/wps_jobs/weather_model_jobs/utils/weather-model-naming.md rename to backend/packages/wps-jobs/src/weather_model_jobs/utils/weather-model-naming.md diff --git a/wps_jobs/wps_jobs/weather_model_jobs/utils/weather_models.py b/backend/packages/wps-jobs/src/weather_model_jobs/utils/weather_models.py similarity index 88% rename from wps_jobs/wps_jobs/weather_model_jobs/utils/weather_models.py rename to backend/packages/wps-jobs/src/weather_model_jobs/utils/weather_models.py index 54c3679442..752d45bcf8 100644 --- a/wps_jobs/wps_jobs/weather_model_jobs/utils/weather_models.py +++ b/backend/packages/wps-jobs/src/weather_model_jobs/utils/weather_models.py @@ -3,20 +3,20 @@ from typing import List, Optional from wps_shared.db.models.observations import HourlyActual from wps_shared.db.models.weather_models import ModelRunPrediction -from wps_jobs.weather_model_jobs.utils.interpolate import ( +from weather_model_jobs.utils.interpolate import ( construct_interpolated_noon_prediction, ) -from wps_jobs.weather_model_jobs.utils.linear_model import LinearModel -from wps_jobs.weather_model_jobs.utils.precip_model import PrecipModel -from wps_jobs.weather_model_jobs.utils.regression_model import ( +from weather_model_jobs.utils.linear_model import LinearModel +from weather_model_jobs.utils.precip_model import PrecipModel +from weather_model_jobs.utils.regression_model import ( RegressionModelProto, model_2_actual_keys, ) -from wps_jobs.weather_model_jobs.utils.sample import Samples -from wps_jobs.weather_model_jobs.utils.utils import ( +from weather_model_jobs.utils.sample import Samples +from weather_model_jobs.utils.utils import ( construct_dictionary_from_list_by_property, ) -from wps_jobs.weather_model_jobs.utils.wind_direction_model import WindDirectionModel +from weather_model_jobs.utils.wind_direction_model import WindDirectionModel logger = logging.getLogger(__name__) diff --git a/wps_jobs/wps_jobs/weather_model_jobs/utils/wind_direction_model.py b/backend/packages/wps-jobs/src/weather_model_jobs/utils/wind_direction_model.py similarity index 90% rename from wps_jobs/wps_jobs/weather_model_jobs/utils/wind_direction_model.py rename to backend/packages/wps-jobs/src/weather_model_jobs/utils/wind_direction_model.py index 0b7fbcc784..146d41d42f 100644 --- a/wps_jobs/wps_jobs/weather_model_jobs/utils/wind_direction_model.py +++ b/backend/packages/wps-jobs/src/weather_model_jobs/utils/wind_direction_model.py @@ -2,9 +2,9 @@ import math from wps_shared.db.models.observations import HourlyActual from wps_shared.db.models.weather_models import ModelRunPrediction -from wps_jobs.weather_model_jobs.utils.linear_model import LinearModel -from wps_jobs.weather_model_jobs.utils.regression_model import RegressionModelBase -from wps_jobs.weather_model_jobs.utils.wind_direction_utils import compute_u_v +from weather_model_jobs.utils.linear_model import LinearModel +from weather_model_jobs.utils.regression_model import RegressionModelBase +from weather_model_jobs.utils.wind_direction_utils import compute_u_v logger = logging.getLogger(__name__) diff --git a/wps_jobs/wps_jobs/weather_model_jobs/utils/wind_direction_utils.py b/backend/packages/wps-jobs/src/weather_model_jobs/utils/wind_direction_utils.py similarity index 100% rename from wps_jobs/wps_jobs/weather_model_jobs/utils/wind_direction_utils.py rename to backend/packages/wps-jobs/src/weather_model_jobs/utils/wind_direction_utils.py diff --git a/backend/packages/wps-shared/README.md b/backend/packages/wps-shared/README.md new file mode 100644 index 0000000000..50812d741f --- /dev/null +++ b/backend/packages/wps-shared/README.md @@ -0,0 +1,7 @@ +# wps-shared + +Shared library for Wildfire Predictive Services Unit. + +Contains common database models, utilities, and schemas used across WPS applications. + +Assumes installation and setup is done in [backend/README.md](../../../backend/README.md) diff --git a/backend/packages/wps-shared/pyproject.toml b/backend/packages/wps-shared/pyproject.toml new file mode 100644 index 0000000000..9ae17e81c5 --- /dev/null +++ b/backend/packages/wps-shared/pyproject.toml @@ -0,0 +1,37 @@ +[project] +name = "wps-shared" +version = "0.1.0" +description = "Wildfire Predictive Services Unit Shared Library" +authors = [{ name = "Darren Boss", email = "darren.boss@gov.bc.ca" }] +requires-python = ">=3.12.3,<4.0" +dependencies = [ + "sqlalchemy>=2,<3", + "aiohttp>=3,<4", + "requests>=2,<3", + "python-decouple>=3,<4", + "geopandas>=1.0.1,<2", + "shapely>=2.0.5,<3", + "pydantic>=2.10.6,<3", + "aiobotocore==2.15.1", + "geoalchemy2>=0,<1", + "affine>=2.4.0,<3", + "fastapi>=0.115.11,<1", + "sentry-sdk>=2.22.0,<3", + "pyjwt>=2.10.1,<3", + "psycopg2-binary>=2.9.10,<3", + "asyncpg>=0.30.0,<1", + "redis>=7.0.0,<8", + "gdal==3.9.2", +] + +[project.optional-dependencies] +dev = [ + "testcontainers[postgres]>=4.10.0,<5", +] + +[build-system] +requires = ["hatchling"] +build-backend = "hatchling.build" + +[tool.hatch.build.targets.wheel] +packages = ["src/wps_shared"] diff --git a/tileserv/tests/__init__.py b/backend/packages/wps-shared/src/wps_shared/__init__.py similarity index 100% rename from tileserv/tests/__init__.py rename to backend/packages/wps-shared/src/wps_shared/__init__.py diff --git a/wps_shared/wps_shared/auth.py b/backend/packages/wps-shared/src/wps_shared/auth.py similarity index 100% rename from wps_shared/wps_shared/auth.py rename to backend/packages/wps-shared/src/wps_shared/auth.py diff --git a/tileserv/config.py b/backend/packages/wps-shared/src/wps_shared/config.py similarity index 100% rename from tileserv/config.py rename to backend/packages/wps-shared/src/wps_shared/config.py diff --git a/wps_shared/wps_shared/data/ERC_ECODIV_polygon/ERC_ECODIV_polygon.cpg b/backend/packages/wps-shared/src/wps_shared/data/ERC_ECODIV_polygon/ERC_ECODIV_polygon.cpg similarity index 100% rename from wps_shared/wps_shared/data/ERC_ECODIV_polygon/ERC_ECODIV_polygon.cpg rename to backend/packages/wps-shared/src/wps_shared/data/ERC_ECODIV_polygon/ERC_ECODIV_polygon.cpg diff --git a/wps_shared/wps_shared/data/ERC_ECODIV_polygon/ERC_ECODIV_polygon.dbf b/backend/packages/wps-shared/src/wps_shared/data/ERC_ECODIV_polygon/ERC_ECODIV_polygon.dbf similarity index 100% rename from wps_shared/wps_shared/data/ERC_ECODIV_polygon/ERC_ECODIV_polygon.dbf rename to backend/packages/wps-shared/src/wps_shared/data/ERC_ECODIV_polygon/ERC_ECODIV_polygon.dbf diff --git a/wps_shared/wps_shared/data/ERC_ECODIV_polygon/ERC_ECODIV_polygon.prj b/backend/packages/wps-shared/src/wps_shared/data/ERC_ECODIV_polygon/ERC_ECODIV_polygon.prj similarity index 100% rename from wps_shared/wps_shared/data/ERC_ECODIV_polygon/ERC_ECODIV_polygon.prj rename to backend/packages/wps-shared/src/wps_shared/data/ERC_ECODIV_polygon/ERC_ECODIV_polygon.prj diff --git a/wps_shared/wps_shared/data/ERC_ECODIV_polygon/ERC_ECODIV_polygon.shp b/backend/packages/wps-shared/src/wps_shared/data/ERC_ECODIV_polygon/ERC_ECODIV_polygon.shp similarity index 100% rename from wps_shared/wps_shared/data/ERC_ECODIV_polygon/ERC_ECODIV_polygon.shp rename to backend/packages/wps-shared/src/wps_shared/data/ERC_ECODIV_polygon/ERC_ECODIV_polygon.shp diff --git a/wps_shared/wps_shared/data/ERC_ECODIV_polygon/ERC_ECODIV_polygon.shx b/backend/packages/wps-shared/src/wps_shared/data/ERC_ECODIV_polygon/ERC_ECODIV_polygon.shx similarity index 100% rename from wps_shared/wps_shared/data/ERC_ECODIV_polygon/ERC_ECODIV_polygon.shx rename to backend/packages/wps-shared/src/wps_shared/data/ERC_ECODIV_polygon/ERC_ECODIV_polygon.shx diff --git a/wps_shared/wps_shared/data/ecodivision_seasons.py b/backend/packages/wps-shared/src/wps_shared/data/ecodivision_seasons.py similarity index 100% rename from wps_shared/wps_shared/data/ecodivision_seasons.py rename to backend/packages/wps-shared/src/wps_shared/data/ecodivision_seasons.py diff --git a/wps_shared/wps_shared/data/ecodivisions_core_seasons.json b/backend/packages/wps-shared/src/wps_shared/data/ecodivisions_core_seasons.json similarity index 100% rename from wps_shared/wps_shared/data/ecodivisions_core_seasons.json rename to backend/packages/wps-shared/src/wps_shared/data/ecodivisions_core_seasons.json diff --git a/wps_shared/wps_shared/db/__init__.py b/backend/packages/wps-shared/src/wps_shared/db/__init__.py similarity index 100% rename from wps_shared/wps_shared/db/__init__.py rename to backend/packages/wps-shared/src/wps_shared/db/__init__.py diff --git a/wps_shared/wps_shared/db/crud/__init__.py b/backend/packages/wps-shared/src/wps_shared/db/crud/__init__.py similarity index 100% rename from wps_shared/wps_shared/db/crud/__init__.py rename to backend/packages/wps-shared/src/wps_shared/db/crud/__init__.py diff --git a/wps_shared/wps_shared/db/crud/api_access_audits.py b/backend/packages/wps-shared/src/wps_shared/db/crud/api_access_audits.py similarity index 100% rename from wps_shared/wps_shared/db/crud/api_access_audits.py rename to backend/packages/wps-shared/src/wps_shared/db/crud/api_access_audits.py diff --git a/wps_shared/wps_shared/db/crud/auto_spatial_advisory.py b/backend/packages/wps-shared/src/wps_shared/db/crud/auto_spatial_advisory.py similarity index 99% rename from wps_shared/wps_shared/db/crud/auto_spatial_advisory.py rename to backend/packages/wps-shared/src/wps_shared/db/crud/auto_spatial_advisory.py index 4b61af1d51..af20fe2009 100644 --- a/wps_shared/wps_shared/db/crud/auto_spatial_advisory.py +++ b/backend/packages/wps-shared/src/wps_shared/db/crud/auto_spatial_advisory.py @@ -39,13 +39,6 @@ logger = logging.getLogger(__name__) -class HfiClassificationThresholdEnum(Enum): - """Enum for the different HFI classification thresholds.""" - - ADVISORY = "advisory" - WARNING = "warning" - - async def get_hfi_classification_threshold( session: AsyncSession, name: HfiClassificationThresholdEnum ) -> HfiClassificationThreshold: diff --git a/wps_shared/wps_shared/db/crud/fire_watch.py b/backend/packages/wps-shared/src/wps_shared/db/crud/fire_watch.py similarity index 100% rename from wps_shared/wps_shared/db/crud/fire_watch.py rename to backend/packages/wps-shared/src/wps_shared/db/crud/fire_watch.py diff --git a/wps_shared/wps_shared/db/crud/forecasts.py b/backend/packages/wps-shared/src/wps_shared/db/crud/forecasts.py similarity index 100% rename from wps_shared/wps_shared/db/crud/forecasts.py rename to backend/packages/wps-shared/src/wps_shared/db/crud/forecasts.py diff --git a/wps_shared/wps_shared/db/crud/fuel_layer.py b/backend/packages/wps-shared/src/wps_shared/db/crud/fuel_layer.py similarity index 100% rename from wps_shared/wps_shared/db/crud/fuel_layer.py rename to backend/packages/wps-shared/src/wps_shared/db/crud/fuel_layer.py diff --git a/wps_shared/wps_shared/db/crud/grass_curing.py b/backend/packages/wps-shared/src/wps_shared/db/crud/grass_curing.py similarity index 100% rename from wps_shared/wps_shared/db/crud/grass_curing.py rename to backend/packages/wps-shared/src/wps_shared/db/crud/grass_curing.py diff --git a/wps_shared/wps_shared/db/crud/hfi_calc.py b/backend/packages/wps-shared/src/wps_shared/db/crud/hfi_calc.py similarity index 100% rename from wps_shared/wps_shared/db/crud/hfi_calc.py rename to backend/packages/wps-shared/src/wps_shared/db/crud/hfi_calc.py diff --git a/wps_shared/wps_shared/db/crud/model_run_repository.py b/backend/packages/wps-shared/src/wps_shared/db/crud/model_run_repository.py similarity index 100% rename from wps_shared/wps_shared/db/crud/model_run_repository.py rename to backend/packages/wps-shared/src/wps_shared/db/crud/model_run_repository.py diff --git a/wps_shared/wps_shared/db/crud/morecast_v2.py b/backend/packages/wps-shared/src/wps_shared/db/crud/morecast_v2.py similarity index 100% rename from wps_shared/wps_shared/db/crud/morecast_v2.py rename to backend/packages/wps-shared/src/wps_shared/db/crud/morecast_v2.py diff --git a/wps_shared/wps_shared/db/crud/observations.py b/backend/packages/wps-shared/src/wps_shared/db/crud/observations.py similarity index 100% rename from wps_shared/wps_shared/db/crud/observations.py rename to backend/packages/wps-shared/src/wps_shared/db/crud/observations.py diff --git a/wps_shared/wps_shared/db/crud/snow.py b/backend/packages/wps-shared/src/wps_shared/db/crud/snow.py similarity index 100% rename from wps_shared/wps_shared/db/crud/snow.py rename to backend/packages/wps-shared/src/wps_shared/db/crud/snow.py diff --git a/wps_shared/wps_shared/db/crud/stations.py b/backend/packages/wps-shared/src/wps_shared/db/crud/stations.py similarity index 100% rename from wps_shared/wps_shared/db/crud/stations.py rename to backend/packages/wps-shared/src/wps_shared/db/crud/stations.py diff --git a/wps_shared/wps_shared/db/crud/weather_models.py b/backend/packages/wps-shared/src/wps_shared/db/crud/weather_models.py similarity index 100% rename from wps_shared/wps_shared/db/crud/weather_models.py rename to backend/packages/wps-shared/src/wps_shared/db/crud/weather_models.py diff --git a/wps_shared/wps_shared/db/database.py b/backend/packages/wps-shared/src/wps_shared/db/database.py similarity index 100% rename from wps_shared/wps_shared/db/database.py rename to backend/packages/wps-shared/src/wps_shared/db/database.py diff --git a/wps_shared/wps_shared/db/models/__init__.py b/backend/packages/wps-shared/src/wps_shared/db/models/__init__.py similarity index 99% rename from wps_shared/wps_shared/db/models/__init__.py rename to backend/packages/wps-shared/src/wps_shared/db/models/__init__.py index 88c529b30e..143329a311 100644 --- a/wps_shared/wps_shared/db/models/__init__.py +++ b/backend/packages/wps-shared/src/wps_shared/db/models/__init__.py @@ -1,4 +1,5 @@ """Class models that reflect resources and map to database tables""" +# ruff: noqa from sqlalchemy.ext.declarative import declarative_base diff --git a/wps_shared/wps_shared/db/models/api_access_audits.py b/backend/packages/wps-shared/src/wps_shared/db/models/api_access_audits.py similarity index 100% rename from wps_shared/wps_shared/db/models/api_access_audits.py rename to backend/packages/wps-shared/src/wps_shared/db/models/api_access_audits.py diff --git a/wps_shared/wps_shared/db/models/auto_spatial_advisory.py b/backend/packages/wps-shared/src/wps_shared/db/models/auto_spatial_advisory.py similarity index 100% rename from wps_shared/wps_shared/db/models/auto_spatial_advisory.py rename to backend/packages/wps-shared/src/wps_shared/db/models/auto_spatial_advisory.py diff --git a/wps_shared/wps_shared/db/models/common.py b/backend/packages/wps-shared/src/wps_shared/db/models/common.py similarity index 100% rename from wps_shared/wps_shared/db/models/common.py rename to backend/packages/wps-shared/src/wps_shared/db/models/common.py diff --git a/wps_shared/wps_shared/db/models/fire_watch.py b/backend/packages/wps-shared/src/wps_shared/db/models/fire_watch.py similarity index 100% rename from wps_shared/wps_shared/db/models/fire_watch.py rename to backend/packages/wps-shared/src/wps_shared/db/models/fire_watch.py diff --git a/wps_shared/wps_shared/db/models/forecasts.py b/backend/packages/wps-shared/src/wps_shared/db/models/forecasts.py similarity index 100% rename from wps_shared/wps_shared/db/models/forecasts.py rename to backend/packages/wps-shared/src/wps_shared/db/models/forecasts.py diff --git a/wps_shared/wps_shared/db/models/fuel_type_raster.py b/backend/packages/wps-shared/src/wps_shared/db/models/fuel_type_raster.py similarity index 100% rename from wps_shared/wps_shared/db/models/fuel_type_raster.py rename to backend/packages/wps-shared/src/wps_shared/db/models/fuel_type_raster.py diff --git a/wps_shared/wps_shared/db/models/grass_curing.py b/backend/packages/wps-shared/src/wps_shared/db/models/grass_curing.py similarity index 100% rename from wps_shared/wps_shared/db/models/grass_curing.py rename to backend/packages/wps-shared/src/wps_shared/db/models/grass_curing.py diff --git a/wps_shared/wps_shared/db/models/hfi_calc.py b/backend/packages/wps-shared/src/wps_shared/db/models/hfi_calc.py similarity index 100% rename from wps_shared/wps_shared/db/models/hfi_calc.py rename to backend/packages/wps-shared/src/wps_shared/db/models/hfi_calc.py diff --git a/wps_shared/wps_shared/db/models/morecast_v2.py b/backend/packages/wps-shared/src/wps_shared/db/models/morecast_v2.py similarity index 100% rename from wps_shared/wps_shared/db/models/morecast_v2.py rename to backend/packages/wps-shared/src/wps_shared/db/models/morecast_v2.py diff --git a/wps_shared/wps_shared/db/models/observations.py b/backend/packages/wps-shared/src/wps_shared/db/models/observations.py similarity index 100% rename from wps_shared/wps_shared/db/models/observations.py rename to backend/packages/wps-shared/src/wps_shared/db/models/observations.py diff --git a/wps_shared/wps_shared/db/models/snow.py b/backend/packages/wps-shared/src/wps_shared/db/models/snow.py similarity index 100% rename from wps_shared/wps_shared/db/models/snow.py rename to backend/packages/wps-shared/src/wps_shared/db/models/snow.py diff --git a/wps_shared/wps_shared/db/models/test_weather_models.py b/backend/packages/wps-shared/src/wps_shared/db/models/test_weather_models.py similarity index 100% rename from wps_shared/wps_shared/db/models/test_weather_models.py rename to backend/packages/wps-shared/src/wps_shared/db/models/test_weather_models.py diff --git a/wps_shared/wps_shared/db/models/weather_models.py b/backend/packages/wps-shared/src/wps_shared/db/models/weather_models.py similarity index 100% rename from wps_shared/wps_shared/db/models/weather_models.py rename to backend/packages/wps-shared/src/wps_shared/db/models/weather_models.py diff --git a/wps_shared/wps_shared/db/storage_assumptions.md b/backend/packages/wps-shared/src/wps_shared/db/storage_assumptions.md similarity index 100% rename from wps_shared/wps_shared/db/storage_assumptions.md rename to backend/packages/wps-shared/src/wps_shared/db/storage_assumptions.md diff --git a/wps_shared/wps_shared/db/storage_assumptions.xlsx b/backend/packages/wps-shared/src/wps_shared/db/storage_assumptions.xlsx similarity index 100% rename from wps_shared/wps_shared/db/storage_assumptions.xlsx rename to backend/packages/wps-shared/src/wps_shared/db/storage_assumptions.xlsx diff --git a/wps_shared/wps_shared/fuel_raster.py b/backend/packages/wps-shared/src/wps_shared/fuel_raster.py similarity index 100% rename from wps_shared/wps_shared/fuel_raster.py rename to backend/packages/wps-shared/src/wps_shared/fuel_raster.py diff --git a/wps_shared/wps_shared/fuel_types.py b/backend/packages/wps-shared/src/wps_shared/fuel_types.py similarity index 100% rename from wps_shared/wps_shared/fuel_types.py rename to backend/packages/wps-shared/src/wps_shared/fuel_types.py diff --git a/wps_shared/wps_shared/geospatial/__init__.py b/backend/packages/wps-shared/src/wps_shared/geospatial/__init__.py similarity index 100% rename from wps_shared/wps_shared/geospatial/__init__.py rename to backend/packages/wps-shared/src/wps_shared/geospatial/__init__.py diff --git a/wps_shared/wps_shared/geospatial/fuel_raster.py b/backend/packages/wps-shared/src/wps_shared/geospatial/fuel_raster.py similarity index 100% rename from wps_shared/wps_shared/geospatial/fuel_raster.py rename to backend/packages/wps-shared/src/wps_shared/geospatial/fuel_raster.py diff --git a/wps_shared/wps_shared/geospatial/geospatial-interpolation.md b/backend/packages/wps-shared/src/wps_shared/geospatial/geospatial-interpolation.md similarity index 100% rename from wps_shared/wps_shared/geospatial/geospatial-interpolation.md rename to backend/packages/wps-shared/src/wps_shared/geospatial/geospatial-interpolation.md diff --git a/wps_shared/wps_shared/geospatial/geospatial.py b/backend/packages/wps-shared/src/wps_shared/geospatial/geospatial.py similarity index 100% rename from wps_shared/wps_shared/geospatial/geospatial.py rename to backend/packages/wps-shared/src/wps_shared/geospatial/geospatial.py diff --git a/wps_shared/wps_shared/geospatial/wps_dataset.py b/backend/packages/wps-shared/src/wps_shared/geospatial/wps_dataset.py similarity index 100% rename from wps_shared/wps_shared/geospatial/wps_dataset.py rename to backend/packages/wps-shared/src/wps_shared/geospatial/wps_dataset.py diff --git a/wps_shared/wps_shared/logging.json b/backend/packages/wps-shared/src/wps_shared/logging.json similarity index 100% rename from wps_shared/wps_shared/logging.json rename to backend/packages/wps-shared/src/wps_shared/logging.json diff --git a/wps_shared/wps_shared/rocketchat_notifications.py b/backend/packages/wps-shared/src/wps_shared/rocketchat_notifications.py similarity index 100% rename from wps_shared/wps_shared/rocketchat_notifications.py rename to backend/packages/wps-shared/src/wps_shared/rocketchat_notifications.py diff --git a/wps_shared/wps_shared/run_type.py b/backend/packages/wps-shared/src/wps_shared/run_type.py similarity index 100% rename from wps_shared/wps_shared/run_type.py rename to backend/packages/wps-shared/src/wps_shared/run_type.py diff --git a/wps_shared/wps_shared/schemas/__init__.py b/backend/packages/wps-shared/src/wps_shared/schemas/__init__.py similarity index 100% rename from wps_shared/wps_shared/schemas/__init__.py rename to backend/packages/wps-shared/src/wps_shared/schemas/__init__.py diff --git a/wps_shared/wps_shared/schemas/auto_spatial_advisory.py b/backend/packages/wps-shared/src/wps_shared/schemas/auto_spatial_advisory.py similarity index 100% rename from wps_shared/wps_shared/schemas/auto_spatial_advisory.py rename to backend/packages/wps-shared/src/wps_shared/schemas/auto_spatial_advisory.py diff --git a/wps_shared/wps_shared/schemas/fba.py b/backend/packages/wps-shared/src/wps_shared/schemas/fba.py similarity index 99% rename from wps_shared/wps_shared/schemas/fba.py rename to backend/packages/wps-shared/src/wps_shared/schemas/fba.py index 6d9a5c046c..5aca70c5da 100644 --- a/wps_shared/wps_shared/schemas/fba.py +++ b/backend/packages/wps-shared/src/wps_shared/schemas/fba.py @@ -192,6 +192,7 @@ class LatestSFMSRunParameter(BaseModel): class LatestSFMSRunParameterResponse(BaseModel): run_parameter: Optional[LatestSFMSRunParameter] = None + class SFMSRunParameter(BaseModel): for_date: date run_type: SFMSRunType diff --git a/wps_shared/wps_shared/schemas/fba_calc.py b/backend/packages/wps-shared/src/wps_shared/schemas/fba_calc.py similarity index 100% rename from wps_shared/wps_shared/schemas/fba_calc.py rename to backend/packages/wps-shared/src/wps_shared/schemas/fba_calc.py diff --git a/wps_shared/wps_shared/schemas/fire_watch.py b/backend/packages/wps-shared/src/wps_shared/schemas/fire_watch.py similarity index 100% rename from wps_shared/wps_shared/schemas/fire_watch.py rename to backend/packages/wps-shared/src/wps_shared/schemas/fire_watch.py diff --git a/wps_shared/wps_shared/schemas/forecasts.py b/backend/packages/wps-shared/src/wps_shared/schemas/forecasts.py similarity index 100% rename from wps_shared/wps_shared/schemas/forecasts.py rename to backend/packages/wps-shared/src/wps_shared/schemas/forecasts.py diff --git a/wps_shared/wps_shared/schemas/hfi_calc.py b/backend/packages/wps-shared/src/wps_shared/schemas/hfi_calc.py similarity index 100% rename from wps_shared/wps_shared/schemas/hfi_calc.py rename to backend/packages/wps-shared/src/wps_shared/schemas/hfi_calc.py diff --git a/wps_shared/wps_shared/schemas/morecast_v2.py b/backend/packages/wps-shared/src/wps_shared/schemas/morecast_v2.py similarity index 100% rename from wps_shared/wps_shared/schemas/morecast_v2.py rename to backend/packages/wps-shared/src/wps_shared/schemas/morecast_v2.py diff --git a/wps_shared/wps_shared/schemas/observations.py b/backend/packages/wps-shared/src/wps_shared/schemas/observations.py similarity index 100% rename from wps_shared/wps_shared/schemas/observations.py rename to backend/packages/wps-shared/src/wps_shared/schemas/observations.py diff --git a/wps_shared/wps_shared/schemas/percentiles.py b/backend/packages/wps-shared/src/wps_shared/schemas/percentiles.py similarity index 100% rename from wps_shared/wps_shared/schemas/percentiles.py rename to backend/packages/wps-shared/src/wps_shared/schemas/percentiles.py diff --git a/wps_shared/wps_shared/schemas/sfms.py b/backend/packages/wps-shared/src/wps_shared/schemas/sfms.py similarity index 100% rename from wps_shared/wps_shared/schemas/sfms.py rename to backend/packages/wps-shared/src/wps_shared/schemas/sfms.py diff --git a/wps_shared/wps_shared/schemas/shared.py b/backend/packages/wps-shared/src/wps_shared/schemas/shared.py similarity index 100% rename from wps_shared/wps_shared/schemas/shared.py rename to backend/packages/wps-shared/src/wps_shared/schemas/shared.py diff --git a/wps_shared/wps_shared/schemas/snow.py b/backend/packages/wps-shared/src/wps_shared/schemas/snow.py similarity index 100% rename from wps_shared/wps_shared/schemas/snow.py rename to backend/packages/wps-shared/src/wps_shared/schemas/snow.py diff --git a/wps_shared/wps_shared/schemas/stations.py b/backend/packages/wps-shared/src/wps_shared/schemas/stations.py similarity index 100% rename from wps_shared/wps_shared/schemas/stations.py rename to backend/packages/wps-shared/src/wps_shared/schemas/stations.py diff --git a/wps_shared/wps_shared/schemas/weather_models.py b/backend/packages/wps-shared/src/wps_shared/schemas/weather_models.py similarity index 100% rename from wps_shared/wps_shared/schemas/weather_models.py rename to backend/packages/wps-shared/src/wps_shared/schemas/weather_models.py diff --git a/wps_shared/wps_shared/sfms/raster_addresser.py b/backend/packages/wps-shared/src/wps_shared/sfms/raster_addresser.py similarity index 100% rename from wps_shared/wps_shared/sfms/raster_addresser.py rename to backend/packages/wps-shared/src/wps_shared/sfms/raster_addresser.py diff --git a/wps_shared/wps_shared/sfms/rdps_filename_marshaller.py b/backend/packages/wps-shared/src/wps_shared/sfms/rdps_filename_marshaller.py similarity index 100% rename from wps_shared/wps_shared/sfms/rdps_filename_marshaller.py rename to backend/packages/wps-shared/src/wps_shared/sfms/rdps_filename_marshaller.py diff --git a/wps_shared/wps_shared/stations.py b/backend/packages/wps-shared/src/wps_shared/stations.py similarity index 100% rename from wps_shared/wps_shared/stations.py rename to backend/packages/wps-shared/src/wps_shared/stations.py diff --git a/tileserv/tests/tools/__init__.py b/backend/packages/wps-shared/src/wps_shared/tests/__init__.py similarity index 100% rename from tileserv/tests/tools/__init__.py rename to backend/packages/wps-shared/src/wps_shared/tests/__init__.py diff --git a/wps_shared/wps_shared/tests/common.py b/backend/packages/wps-shared/src/wps_shared/tests/common.py similarity index 100% rename from wps_shared/wps_shared/tests/common.py rename to backend/packages/wps-shared/src/wps_shared/tests/common.py diff --git a/wps_shared/wps_shared/tests/conftest.py b/backend/packages/wps-shared/src/wps_shared/tests/conftest.py similarity index 100% rename from wps_shared/wps_shared/tests/conftest.py rename to backend/packages/wps-shared/src/wps_shared/tests/conftest.py diff --git a/wps_jobs/tests/__init__.py b/backend/packages/wps-shared/src/wps_shared/tests/db/__init__.py similarity index 100% rename from wps_jobs/tests/__init__.py rename to backend/packages/wps-shared/src/wps_shared/tests/db/__init__.py diff --git a/wps_shared/wps_shared/tests/db/crud/test_auto_spatial_advisory.py b/backend/packages/wps-shared/src/wps_shared/tests/db/crud/test_auto_spatial_advisory.py similarity index 90% rename from wps_shared/wps_shared/tests/db/crud/test_auto_spatial_advisory.py rename to backend/packages/wps-shared/src/wps_shared/tests/db/crud/test_auto_spatial_advisory.py index af769c3619..0fdae77d3e 100644 --- a/wps_shared/wps_shared/tests/db/crud/test_auto_spatial_advisory.py +++ b/backend/packages/wps-shared/src/wps_shared/tests/db/crud/test_auto_spatial_advisory.py @@ -20,9 +20,10 @@ def postgres_container(): @pytest.fixture(scope="function") async def engine(postgres_container): - host = postgres_container.get_container_host_ip() - port = postgres_container.get_exposed_port(5432) - db_url = f"postgresql+asyncpg://test:test@{host}:{port}/test" + # Get the connection URL from the container (includes correct credentials) + sync_url = postgres_container.get_connection_url() + # Convert to asyncpg URL for async operations (psycopg2 -> asyncpg) + db_url = sync_url.replace("postgresql+psycopg2://", "postgresql+asyncpg://") engine = create_async_engine(db_url, echo=False) diff --git a/wps_shared/wps_shared/tests/db/test_api_access_audits.py b/backend/packages/wps-shared/src/wps_shared/tests/db/test_api_access_audits.py similarity index 100% rename from wps_shared/wps_shared/tests/db/test_api_access_audits.py rename to backend/packages/wps-shared/src/wps_shared/tests/db/test_api_access_audits.py diff --git a/wps_shared/wps_shared/tests/db/test_model_run_repository.py b/backend/packages/wps-shared/src/wps_shared/tests/db/test_model_run_repository.py similarity index 97% rename from wps_shared/wps_shared/tests/db/test_model_run_repository.py rename to backend/packages/wps-shared/src/wps_shared/tests/db/test_model_run_repository.py index 1298c7b447..98145c2c0f 100644 --- a/wps_shared/wps_shared/tests/db/test_model_run_repository.py +++ b/backend/packages/wps-shared/src/wps_shared/tests/db/test_model_run_repository.py @@ -90,21 +90,6 @@ def test_get_prediction_run(repository: ModelRunRepository, db_session: Session) assert result == mock_prediction_run -def test_get_prediction_model(repository: ModelRunRepository, db_session: Session): - # Insert a mock record - mock_prediction_model = PredictionModel( - name="GFS Global Forecast System", - abbreviation=ModelEnum.GFS.value, - projection=ProjectionEnum.GFS_LONLAT.value, - ) - db_session.add(mock_prediction_model) - db_session.commit() - - result = repository.get_prediction_model(ModelEnum.GFS, ProjectionEnum.GFS_LONLAT) - - assert result == mock_prediction_model - - def test_get_processed_file_record(repository: ModelRunRepository, db_session: Session): url = "https://example.com/file" diff --git a/wps_shared/wps_shared/tests/fixtures/console.pathfinder.gov.bc.ca:8443/apis/apps/v1beta1/namespaces/project_namespace/postgresclusters/some_suffix.json b/backend/packages/wps-shared/src/wps_shared/tests/fixtures/console.pathfinder.gov.bc.ca:8443/apis/apps/v1beta1/namespaces/project_namespace/postgresclusters/some_suffix.json similarity index 100% rename from wps_shared/wps_shared/tests/fixtures/console.pathfinder.gov.bc.ca:8443/apis/apps/v1beta1/namespaces/project_namespace/postgresclusters/some_suffix.json rename to backend/packages/wps-shared/src/wps_shared/tests/fixtures/console.pathfinder.gov.bc.ca:8443/apis/apps/v1beta1/namespaces/project_namespace/postgresclusters/some_suffix.json diff --git a/wps_shared/wps_shared/tests/fixtures/console.pathfinder.gov.bc.ca:8443/lookup.json b/backend/packages/wps-shared/src/wps_shared/tests/fixtures/console.pathfinder.gov.bc.ca:8443/lookup.json similarity index 100% rename from wps_shared/wps_shared/tests/fixtures/console.pathfinder.gov.bc.ca:8443/lookup.json rename to backend/packages/wps-shared/src/wps_shared/tests/fixtures/console.pathfinder.gov.bc.ca:8443/lookup.json diff --git a/wps_shared/wps_shared/tests/fixtures/loader.py b/backend/packages/wps-shared/src/wps_shared/tests/fixtures/loader.py similarity index 100% rename from wps_shared/wps_shared/tests/fixtures/loader.py rename to backend/packages/wps-shared/src/wps_shared/tests/fixtures/loader.py diff --git a/wps_shared/wps_shared/tests/fixtures/rc-notifications-test.ca/api/v1/chat.postMessage.json b/backend/packages/wps-shared/src/wps_shared/tests/fixtures/rc-notifications-test.ca/api/v1/chat.postMessage.json similarity index 100% rename from wps_shared/wps_shared/tests/fixtures/rc-notifications-test.ca/api/v1/chat.postMessage.json rename to backend/packages/wps-shared/src/wps_shared/tests/fixtures/rc-notifications-test.ca/api/v1/chat.postMessage.json diff --git a/wps_shared/wps_shared/tests/fixtures/rc-notifications-test.ca/lookup.json b/backend/packages/wps-shared/src/wps_shared/tests/fixtures/rc-notifications-test.ca/lookup.json similarity index 100% rename from wps_shared/wps_shared/tests/fixtures/rc-notifications-test.ca/lookup.json rename to backend/packages/wps-shared/src/wps_shared/tests/fixtures/rc-notifications-test.ca/lookup.json diff --git a/wps_shared/wps_shared/tests/fixtures/wf1/lookup.json b/backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/lookup.json similarity index 100% rename from wps_shared/wps_shared/tests/fixtures/wf1/lookup.json rename to backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/lookup.json diff --git a/wps_shared/wps_shared/tests/fixtures/wf1/pub/oauth2/v1/oauth/token.json b/backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/pub/oauth2/v1/oauth/token.json similarity index 100% rename from wps_shared/wps_shared/tests/fixtures/wf1/pub/oauth2/v1/oauth/token.json rename to backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/pub/oauth2/v1/oauth/token.json diff --git a/wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/dailies/rsql__query_weatherTimestamp==1618862400000_page_0_size_1000.json b/backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/dailies/rsql__query_weatherTimestamp==1618862400000_page_0_size_1000.json similarity index 100% rename from wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/dailies/rsql__query_weatherTimestamp==1618862400000_page_0_size_1000.json rename to backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/dailies/rsql__query_weatherTimestamp==1618862400000_page_0_size_1000.json diff --git a/wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/dailies/search__findDailiesByStationIdIsInAndWeatherTimestampBetweenOrderByStationIdAscWeatherTimestampAsc__size_1000_page_0_startingTimestamp_1665086400000_endingTimestamp_1665086400000_statio.json b/backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/dailies/search__findDailiesByStationIdIsInAndWeatherTimestampBetweenOrderByStationIdAscWeatherTimestampAsc__size_1000_page_0_startingTimestamp_1665086400000_endingTimestamp_1665086400000_statio.json similarity index 100% rename from wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/dailies/search__findDailiesByStationIdIsInAndWeatherTimestampBetweenOrderByStationIdAscWeatherTimestampAsc__size_1000_page_0_startingTimestamp_1665086400000_endingTimestamp_1665086400000_statio.json rename to backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/dailies/search__findDailiesByStationIdIsInAndWeatherTimestampBetweenOrderByStationIdAscWeatherTimestampAsc__size_1000_page_0_startingTimestamp_1665086400000_endingTimestamp_1665086400000_statio.json diff --git a/wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/dailies/search__findDailiesByStationIdIsInAndWeatherTimestampBetweenOrderByStationIdAscWeatherTimestampAsc__size_1000_page_0_startingTimestamp_1678824000000_endingTimestamp_1679256000000_statio.json b/backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/dailies/search__findDailiesByStationIdIsInAndWeatherTimestampBetweenOrderByStationIdAscWeatherTimestampAsc__size_1000_page_0_startingTimestamp_1678824000000_endingTimestamp_1679256000000_statio.json similarity index 100% rename from wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/dailies/search__findDailiesByStationIdIsInAndWeatherTimestampBetweenOrderByStationIdAscWeatherTimestampAsc__size_1000_page_0_startingTimestamp_1678824000000_endingTimestamp_1679256000000_statio.json rename to 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b/backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==209_or_stationCode==211_or_stationCode==302.json similarity index 100% rename from wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==209_or_stationCode==211_or_stationCode==302.json rename to backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==209_or_stationCode==211_or_stationCode==302.json diff --git a/wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==230.json b/backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==230.json similarity index 100% rename from wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==230.json rename to backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==230.json diff --git a/wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==230_or_stationCode==239.json b/backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==230_or_stationCode==239.json similarity index 100% rename from wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==230_or_stationCode==239.json rename to backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==230_or_stationCode==239.json diff --git a/wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==322.json b/backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==322.json similarity index 100% rename from wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==322.json rename to backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==322.json diff --git a/wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==322_or_stationCode==346_or_stationCode==334.json b/backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==322_or_stationCode==346_or_stationCode==334.json similarity index 100% rename from wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==322_or_stationCode==346_or_stationCode==334.json rename to backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==322_or_stationCode==346_or_stationCode==334.json diff --git a/wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==322_or_stationCode==838.json b/backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==322_or_stationCode==838.json similarity index 100% rename from wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==322_or_stationCode==838.json rename to backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==322_or_stationCode==838.json diff --git a/wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==836.json b/backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==836.json similarity index 100% rename from wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==836.json rename to backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==836.json diff --git a/wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==838.json b/backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==838.json similarity index 100% rename from wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==838.json rename to backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==838.json diff --git a/wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==838_or_stationCode==209.json b/backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==838_or_stationCode==209.json similarity index 100% rename from wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==838_or_stationCode==209.json rename to backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==838_or_stationCode==209.json diff --git a/wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==956.json b/backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==956.json similarity index 100% rename from wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==956.json rename to backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==956.json diff --git a/wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==999.json b/backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==999.json similarity index 100% rename from wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==999.json rename to backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/stations/rsql__size_1000_sort_displayLabel_page_0_query_stationCode==999.json diff --git a/wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/stations__size_1000_sort_displayLabel_page_0.json b/backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/stations__size_1000_sort_displayLabel_page_0.json similarity index 100% rename from wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/stations__size_1000_sort_displayLabel_page_0.json rename to backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/stations__size_1000_sort_displayLabel_page_0.json diff --git "a/wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/stations__size_1000_sort_displayLabel_page_0_query_stationStatus.id==\"ACTIVE\".json" "b/backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/stations__size_1000_sort_displayLabel_page_0_query_stationStatus.id==\"ACTIVE\".json" similarity index 100% rename from "wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/stations__size_1000_sort_displayLabel_page_0_query_stationStatus.id==\"ACTIVE\".json" rename to "backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/stations__size_1000_sort_displayLabel_page_0_query_stationStatus.id==\"ACTIVE\".json" diff --git a/wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/stations__size_1000_sort_displayLabel_page_1.json b/backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/stations__size_1000_sort_displayLabel_page_1.json similarity index 100% rename from wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/stations__size_1000_sort_displayLabel_page_1.json rename to backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/stations__size_1000_sort_displayLabel_page_1.json diff --git "a/wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/stations__size_1000_sort_displayLabel_page_1_query_stationStatus.id==\"ACTIVE\".json" "b/backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/stations__size_1000_sort_displayLabel_page_1_query_stationStatus.id==\"ACTIVE\".json" similarity index 100% rename from "wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/stations__size_1000_sort_displayLabel_page_1_query_stationStatus.id==\"ACTIVE\".json" rename to "backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/stations__size_1000_sort_displayLabel_page_1_query_stationStatus.id==\"ACTIVE\".json" diff --git a/wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/stations__size_1000_sort_displayLabel_page_2.json b/backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/stations__size_1000_sort_displayLabel_page_2.json similarity index 100% rename from wps_shared/wps_shared/tests/fixtures/wf1/wfwx/v1/stations__size_1000_sort_displayLabel_page_2.json rename to backend/packages/wps-shared/src/wps_shared/tests/fixtures/wf1/wfwx/v1/stations__size_1000_sort_displayLabel_page_2.json diff --git a/wps_shared/wps_shared/tests/fixtures/wfappst.nrs.gov.bc.ca/lookup.json b/backend/packages/wps-shared/src/wps_shared/tests/fixtures/wfappst.nrs.gov.bc.ca/lookup.json similarity index 100% rename from wps_shared/wps_shared/tests/fixtures/wfappst.nrs.gov.bc.ca/lookup.json rename to backend/packages/wps-shared/src/wps_shared/tests/fixtures/wfappst.nrs.gov.bc.ca/lookup.json diff --git a/wps_shared/wps_shared/tests/geospatial/3005_lats.tif b/backend/packages/wps-shared/src/wps_shared/tests/geospatial/3005_lats.tif similarity index 100% rename from wps_shared/wps_shared/tests/geospatial/3005_lats.tif rename to backend/packages/wps-shared/src/wps_shared/tests/geospatial/3005_lats.tif diff --git a/wps_shared/wps_shared/tests/geospatial/4326_lats.tif b/backend/packages/wps-shared/src/wps_shared/tests/geospatial/4326_lats.tif similarity index 100% rename from wps_shared/wps_shared/tests/geospatial/4326_lats.tif rename to backend/packages/wps-shared/src/wps_shared/tests/geospatial/4326_lats.tif diff --git a/wps_shared/wps_shared/tests/geospatial/CMC_glb_latlon.15x.15_projection_wkt.txt b/backend/packages/wps-shared/src/wps_shared/tests/geospatial/CMC_glb_latlon.15x.15_projection_wkt.txt similarity index 100% rename from wps_shared/wps_shared/tests/geospatial/CMC_glb_latlon.15x.15_projection_wkt.txt rename to backend/packages/wps-shared/src/wps_shared/tests/geospatial/CMC_glb_latlon.15x.15_projection_wkt.txt diff --git a/wps_shared/wps_shared/tests/geospatial/CMC_hrdps_continental_ps2.5km_projection_wkt.txt b/backend/packages/wps-shared/src/wps_shared/tests/geospatial/CMC_hrdps_continental_ps2.5km_projection_wkt.txt similarity index 100% rename from wps_shared/wps_shared/tests/geospatial/CMC_hrdps_continental_ps2.5km_projection_wkt.txt rename to backend/packages/wps-shared/src/wps_shared/tests/geospatial/CMC_hrdps_continental_ps2.5km_projection_wkt.txt diff --git a/wps_jobs/wps_jobs/weather_model_jobs/utils/__init__.py b/backend/packages/wps-shared/src/wps_shared/tests/geospatial/__init__.py similarity index 100% rename from wps_jobs/wps_jobs/weather_model_jobs/utils/__init__.py rename to backend/packages/wps-shared/src/wps_shared/tests/geospatial/__init__.py diff --git a/wps_shared/wps_shared/tests/geospatial/dataset_common.py b/backend/packages/wps-shared/src/wps_shared/tests/geospatial/dataset_common.py similarity index 100% rename from wps_shared/wps_shared/tests/geospatial/dataset_common.py rename to backend/packages/wps-shared/src/wps_shared/tests/geospatial/dataset_common.py diff --git a/wps_shared/wps_shared/tests/geospatial/snow_masked_hfi20240810.tif b/backend/packages/wps-shared/src/wps_shared/tests/geospatial/snow_masked_hfi20240810.tif similarity index 100% rename from wps_shared/wps_shared/tests/geospatial/snow_masked_hfi20240810.tif rename to backend/packages/wps-shared/src/wps_shared/tests/geospatial/snow_masked_hfi20240810.tif diff --git a/wps_shared/wps_shared/tests/geospatial/test_fuel_raster.py b/backend/packages/wps-shared/src/wps_shared/tests/geospatial/test_fuel_raster.py similarity index 100% rename from wps_shared/wps_shared/tests/geospatial/test_fuel_raster.py rename to backend/packages/wps-shared/src/wps_shared/tests/geospatial/test_fuel_raster.py diff --git a/wps_shared/wps_shared/tests/geospatial/test_geospatial.py b/backend/packages/wps-shared/src/wps_shared/tests/geospatial/test_geospatial.py similarity index 100% rename from wps_shared/wps_shared/tests/geospatial/test_geospatial.py rename to backend/packages/wps-shared/src/wps_shared/tests/geospatial/test_geospatial.py diff --git a/wps_shared/wps_shared/tests/geospatial/test_wps_dataset.py b/backend/packages/wps-shared/src/wps_shared/tests/geospatial/test_wps_dataset.py similarity index 100% rename from wps_shared/wps_shared/tests/geospatial/test_wps_dataset.py rename to backend/packages/wps-shared/src/wps_shared/tests/geospatial/test_wps_dataset.py diff --git a/wps_shared/wps_shared/tests/geospatial/zero_layer.tif b/backend/packages/wps-shared/src/wps_shared/tests/geospatial/zero_layer.tif similarity index 100% rename from wps_shared/wps_shared/tests/geospatial/zero_layer.tif rename to backend/packages/wps-shared/src/wps_shared/tests/geospatial/zero_layer.tif diff --git a/wps_shared/wps_shared/tests/test_fuel_raster.py b/backend/packages/wps-shared/src/wps_shared/tests/test_fuel_raster.py similarity index 100% rename from wps_shared/wps_shared/tests/test_fuel_raster.py rename to backend/packages/wps-shared/src/wps_shared/tests/test_fuel_raster.py diff --git a/wps_shared/wps_shared/tests/test_raster_addresser.py b/backend/packages/wps-shared/src/wps_shared/tests/test_raster_addresser.py similarity index 100% rename from wps_shared/wps_shared/tests/test_raster_addresser.py rename to backend/packages/wps-shared/src/wps_shared/tests/test_raster_addresser.py diff --git a/wps_shared/wps_shared/tests/test_rdps_filename_marshaller.py b/backend/packages/wps-shared/src/wps_shared/tests/test_rdps_filename_marshaller.py similarity index 100% rename from wps_shared/wps_shared/tests/test_rdps_filename_marshaller.py rename to backend/packages/wps-shared/src/wps_shared/tests/test_rdps_filename_marshaller.py diff --git a/wps_shared/wps_shared/tests/utils/test_s3.py b/backend/packages/wps-shared/src/wps_shared/tests/utils/test_s3.py similarity index 100% rename from wps_shared/wps_shared/tests/utils/test_s3.py rename to backend/packages/wps-shared/src/wps_shared/tests/utils/test_s3.py diff --git a/wps_shared/wps_shared/tests/utils/test_s3_client.py b/backend/packages/wps-shared/src/wps_shared/tests/utils/test_s3_client.py similarity index 100% rename from wps_shared/wps_shared/tests/utils/test_s3_client.py rename to backend/packages/wps-shared/src/wps_shared/tests/utils/test_s3_client.py diff --git a/wps_shared/wps_shared/tests/wildfire_one/test_schema_parsers.py b/backend/packages/wps-shared/src/wps_shared/tests/wildfire_one/test_schema_parsers.py similarity index 100% rename from wps_shared/wps_shared/tests/wildfire_one/test_schema_parsers.py rename to backend/packages/wps-shared/src/wps_shared/tests/wildfire_one/test_schema_parsers.py diff --git a/wps_shared/wps_shared/tests/wildfire_one/test_util.py b/backend/packages/wps-shared/src/wps_shared/tests/wildfire_one/test_util.py similarity index 100% rename from wps_shared/wps_shared/tests/wildfire_one/test_util.py rename to backend/packages/wps-shared/src/wps_shared/tests/wildfire_one/test_util.py diff --git a/wps_shared/wps_shared/tests/wildfire_one/test_validation.py b/backend/packages/wps-shared/src/wps_shared/tests/wildfire_one/test_validation.py similarity index 100% rename from wps_shared/wps_shared/tests/wildfire_one/test_validation.py rename to backend/packages/wps-shared/src/wps_shared/tests/wildfire_one/test_validation.py diff --git a/wps_shared/wps_shared/tests/wildfire_one/test_wildfire_one.py b/backend/packages/wps-shared/src/wps_shared/tests/wildfire_one/test_wildfire_one.py similarity index 100% rename from wps_shared/wps_shared/tests/wildfire_one/test_wildfire_one.py rename to backend/packages/wps-shared/src/wps_shared/tests/wildfire_one/test_wildfire_one.py diff --git a/wps_shared/wps_shared/utils/__init__.py b/backend/packages/wps-shared/src/wps_shared/utils/__init__.py similarity index 100% rename from wps_shared/wps_shared/utils/__init__.py rename to backend/packages/wps-shared/src/wps_shared/utils/__init__.py diff --git a/wps_shared/wps_shared/utils/dewpoint.py b/backend/packages/wps-shared/src/wps_shared/utils/dewpoint.py similarity index 100% rename from wps_shared/wps_shared/utils/dewpoint.py rename to backend/packages/wps-shared/src/wps_shared/utils/dewpoint.py diff --git a/wps_shared/wps_shared/utils/polygonize.py b/backend/packages/wps-shared/src/wps_shared/utils/polygonize.py similarity index 100% rename from wps_shared/wps_shared/utils/polygonize.py rename to backend/packages/wps-shared/src/wps_shared/utils/polygonize.py diff --git a/wps_shared/wps_shared/utils/redis.py b/backend/packages/wps-shared/src/wps_shared/utils/redis.py similarity index 100% rename from wps_shared/wps_shared/utils/redis.py rename to backend/packages/wps-shared/src/wps_shared/utils/redis.py diff --git a/wps_shared/wps_shared/utils/s3.py b/backend/packages/wps-shared/src/wps_shared/utils/s3.py similarity index 100% rename from wps_shared/wps_shared/utils/s3.py rename to backend/packages/wps-shared/src/wps_shared/utils/s3.py diff --git a/wps_shared/wps_shared/utils/s3_client.py b/backend/packages/wps-shared/src/wps_shared/utils/s3_client.py similarity index 100% rename from wps_shared/wps_shared/utils/s3_client.py rename to backend/packages/wps-shared/src/wps_shared/utils/s3_client.py diff --git a/wps_shared/wps_shared/utils/time.py b/backend/packages/wps-shared/src/wps_shared/utils/time.py similarity index 100% rename from wps_shared/wps_shared/utils/time.py rename to backend/packages/wps-shared/src/wps_shared/utils/time.py diff --git a/wps_shared/wps_shared/weather_models/__init__.py b/backend/packages/wps-shared/src/wps_shared/weather_models/__init__.py similarity index 100% rename from wps_shared/wps_shared/weather_models/__init__.py rename to backend/packages/wps-shared/src/wps_shared/weather_models/__init__.py diff --git a/wps_shared/wps_shared/weather_models/fetch/__init__.py b/backend/packages/wps-shared/src/wps_shared/weather_models/fetch/__init__.py similarity index 70% rename from wps_shared/wps_shared/weather_models/fetch/__init__.py rename to backend/packages/wps-shared/src/wps_shared/weather_models/fetch/__init__.py index c7b7fc1397..c310761449 100644 --- a/wps_shared/wps_shared/weather_models/fetch/__init__.py +++ b/backend/packages/wps-shared/src/wps_shared/weather_models/fetch/__init__.py @@ -1,4 +1,5 @@ -""" Contains code common to wps_jobs.weather_models.fetch """ +"""Contains code common to weather_models.fetch""" + import logging from typing import List from shapely.geometry import Point, Polygon @@ -9,5 +10,5 @@ def extract_stations_in_polygon(stations: List[WeatherStation], polygon: Polygon) -> List[List]: - """ Given a list of stations, return all the stations within the specified polygon. """ + """Given a list of stations, return all the stations within the specified polygon.""" return [station for station in stations if Point(station.long, station.lat).within(polygon)] diff --git a/wps_shared/wps_shared/weather_models/fetch/predictions.py b/backend/packages/wps-shared/src/wps_shared/weather_models/fetch/predictions.py similarity index 100% rename from wps_shared/wps_shared/weather_models/fetch/predictions.py rename to backend/packages/wps-shared/src/wps_shared/weather_models/fetch/predictions.py diff --git a/wps_shared/wps_shared/weather_models/fetch/summaries.py b/backend/packages/wps-shared/src/wps_shared/weather_models/fetch/summaries.py similarity index 100% rename from wps_shared/wps_shared/weather_models/fetch/summaries.py rename to backend/packages/wps-shared/src/wps_shared/weather_models/fetch/summaries.py diff --git a/wps_shared/wps_shared/weather_models/job_utils.py b/backend/packages/wps-shared/src/wps_shared/weather_models/job_utils.py similarity index 100% rename from wps_shared/wps_shared/weather_models/job_utils.py rename to backend/packages/wps-shared/src/wps_shared/weather_models/job_utils.py diff --git a/wps_shared/wps_shared/wildfire_one/__init__.py b/backend/packages/wps-shared/src/wps_shared/wildfire_one/__init__.py similarity index 100% rename from wps_shared/wps_shared/wildfire_one/__init__.py rename to backend/packages/wps-shared/src/wps_shared/wildfire_one/__init__.py diff --git a/wps_shared/wps_shared/wildfire_one/query_builders.py b/backend/packages/wps-shared/src/wps_shared/wildfire_one/query_builders.py similarity index 100% rename from wps_shared/wps_shared/wildfire_one/query_builders.py rename to backend/packages/wps-shared/src/wps_shared/wildfire_one/query_builders.py diff --git a/wps_shared/wps_shared/wildfire_one/schema_parsers.py b/backend/packages/wps-shared/src/wps_shared/wildfire_one/schema_parsers.py similarity index 100% rename from wps_shared/wps_shared/wildfire_one/schema_parsers.py rename to backend/packages/wps-shared/src/wps_shared/wildfire_one/schema_parsers.py diff --git a/wps_shared/wps_shared/wildfire_one/util.py b/backend/packages/wps-shared/src/wps_shared/wildfire_one/util.py similarity index 100% rename from wps_shared/wps_shared/wildfire_one/util.py rename to backend/packages/wps-shared/src/wps_shared/wildfire_one/util.py diff --git a/wps_shared/wps_shared/wildfire_one/validation.py b/backend/packages/wps-shared/src/wps_shared/wildfire_one/validation.py similarity index 100% rename from wps_shared/wps_shared/wildfire_one/validation.py rename to backend/packages/wps-shared/src/wps_shared/wildfire_one/validation.py diff --git a/wps_shared/wps_shared/wildfire_one/wfwx_api.py b/backend/packages/wps-shared/src/wps_shared/wildfire_one/wfwx_api.py similarity index 100% rename from wps_shared/wps_shared/wildfire_one/wfwx_api.py rename to backend/packages/wps-shared/src/wps_shared/wildfire_one/wfwx_api.py diff --git a/wps_shared/wps_shared/wildfire_one/wfwx_post_api.py b/backend/packages/wps-shared/src/wps_shared/wildfire_one/wfwx_post_api.py similarity index 100% rename from wps_shared/wps_shared/wildfire_one/wfwx_post_api.py rename to backend/packages/wps-shared/src/wps_shared/wildfire_one/wfwx_post_api.py diff --git a/wps_shared/wps_shared/wildfire_one/wildfire_fetchers.py b/backend/packages/wps-shared/src/wps_shared/wildfire_one/wildfire_fetchers.py similarity index 100% rename from wps_shared/wps_shared/wildfire_one/wildfire_fetchers.py rename to backend/packages/wps-shared/src/wps_shared/wildfire_one/wildfire_fetchers.py diff --git a/wps_shared/wps_shared/wps_logging.py b/backend/packages/wps-shared/src/wps_shared/wps_logging.py similarity index 100% rename from wps_shared/wps_shared/wps_logging.py rename to backend/packages/wps-shared/src/wps_shared/wps_logging.py diff --git a/backend/packages/wps-tools/.env.example b/backend/packages/wps-tools/.env.example new file mode 100644 index 0000000000..f687875551 --- /dev/null +++ b/backend/packages/wps-tools/.env.example @@ -0,0 +1,9 @@ +# S3 Object Store Configuration +OBJECT_STORE_SERVER= +OBJECT_STORE_USER_ID= +OBJECT_STORE_SECRET= +OBJECT_STORE_BUCKET= + +# API Configuration for TIF Pusher +URL= +SECRET= diff --git a/backend/packages/wps-tools/.gitignore b/backend/packages/wps-tools/.gitignore new file mode 100644 index 0000000000..0b908fe21a --- /dev/null +++ b/backend/packages/wps-tools/.gitignore @@ -0,0 +1,4 @@ +python_cache/ +*.pyc +__pycache__/ +.env diff --git a/backend/packages/wps-tools/README.md b/backend/packages/wps-tools/README.md new file mode 100644 index 0000000000..a6f8184611 --- /dev/null +++ b/backend/packages/wps-tools/README.md @@ -0,0 +1,7 @@ +# wps-tools + +Utility tools for Wildfire Predictive Services Unit. + +Contains utilities for managing raster data, S3 operations, and other administrative tasks. + +Assumes installation and setup is done in [backend/README.md](../../../backend/README.md) diff --git a/backend/packages/wps-tools/pyproject.toml b/backend/packages/wps-tools/pyproject.toml new file mode 100644 index 0000000000..c97b659d39 --- /dev/null +++ b/backend/packages/wps-tools/pyproject.toml @@ -0,0 +1,20 @@ +[project] +name = "wps-tools" +version = "0.1.0" +description = "Wildfire Predictive Services Unit Tools" +authors = [{ name = "Conor Brady", email = "conor.brady@gov.bc.ca" }] +requires-python = ">=3.12.3,<4.0" +dependencies = [ + "python-decouple>=3.6,<4", + "aiobotocore>=2.4.1,<3", + "types-aiobotocore[s3]>=2.4.1,<3", + "pandas>=1.5.2,<3", + "requests>=2.31.0,<3", +] + +[build-system] +requires = ["hatchling"] +build-backend = "hatchling.build" + +[tool.hatch.build.targets.wheel] +packages = ["src/wps_tools"] diff --git a/tileserv/tools/__init__.py b/backend/packages/wps-tools/src/wps_tools/__init__.py similarity index 100% rename from tileserv/tools/__init__.py rename to backend/packages/wps-tools/src/wps_tools/__init__.py diff --git a/tileserv/tools/s3.py b/backend/packages/wps-tools/src/wps_tools/s3.py similarity index 100% rename from tileserv/tools/s3.py rename to backend/packages/wps-tools/src/wps_tools/s3.py diff --git a/tileserv/tools/tif_pusher.py b/backend/packages/wps-tools/src/wps_tools/tif_pusher.py similarity index 58% rename from tileserv/tools/tif_pusher.py rename to backend/packages/wps-tools/src/wps_tools/tif_pusher.py index dd5c53a9c3..358a04970b 100644 --- a/tileserv/tools/tif_pusher.py +++ b/backend/packages/wps-tools/src/wps_tools/tif_pusher.py @@ -6,13 +6,13 @@ import pandas as pd from decouple import config -from s3 import get_tifs_for_date +from wps_tools.s3 import get_tifs_for_date logger = logging.getLogger(__name__) logger.setLevel(logging.INFO) ch = logging.StreamHandler() ch.setLevel(logging.INFO) -formatter = logging.Formatter('%(asctime)s - %(name)s - %(levelname)s - %(message)s') +formatter = logging.Formatter("%(asctime)s - %(name)s - %(levelname)s - %(message)s") ch.setFormatter(formatter) logger.addHandler(ch) @@ -20,8 +20,9 @@ def build_post_body_for_tiff(tif_object, run_date: date): key: str = tif_object["Key"] for_date_str: str = tif_object["Key"].split("hfi")[1].split(".")[0] - for_date: str = date(year=int(for_date_str[0:4]), month=int( - for_date_str[4:6]), day=int(for_date_str[6:8])).isoformat() + for_date: str = date( + year=int(for_date_str[0:4]), month=int(for_date_str[4:6]), day=int(for_date_str[6:8]) + ).isoformat() runtype = "forecast" if "forecast" in key else "actual" return {"key": key, "for_date": for_date, "runtype": runtype, "run_date": run_date.isoformat()} @@ -29,30 +30,36 @@ def build_post_body_for_tiff(tif_object, run_date: date): async def push_tifs_to_api(start_date: date, end_date: date): """ - Given a start date and end date, look up forecasts and actuals for each date in order, - processing each tif ordered by their last modified timestamp + Given a start date and end date, look up forecasts and actuals for each date in order, + processing each tif ordered by their last modified timestamp """ - daterange = pd.date_range(start_date, end_date, freq='D').date + daterange = pd.date_range(start_date, end_date, freq="D").date for current_date in daterange: tif_objects = await get_tifs_for_date(current_date) for tif_object in tif_objects: post_body = build_post_body_for_tiff(tif_object, current_date) logger.info(post_body) - response = requests.post(url=config("URL"), json=post_body, headers={ - "Secret": config("SECRET"), "Content-Type": "application/json"}) + response = requests.post( + url=config("URL"), + json=post_body, + headers={"Secret": config("SECRET"), "Content-Type": "application/json"}, + ) logger.info(response) async def main(start_date: date, end_date: date): - logger.info('Generating SFMS uploads for start date: "%s" end date: "%s"', - start_date.isoformat(), end_date.isoformat()) + logger.info( + 'Generating SFMS uploads for start date: "%s" end date: "%s"', + start_date.isoformat(), + end_date.isoformat(), + ) await push_tifs_to_api(start_date, end_date) -if __name__ == '__main__': +if __name__ == "__main__": if len(sys.argv) != 3: - print('Usage: python3 tif_pusher.py start_date end_date') + print("Usage: python3 tif_pusher.py start_date end_date") sys.exit(1) loop = asyncio.new_event_loop() diff --git a/wps_shared/wps_shared/__init__.py b/backend/packages/wps-tools/tests/__init__.py similarity index 100% rename from wps_shared/wps_shared/__init__.py rename to backend/packages/wps-tools/tests/__init__.py diff --git a/backend/packages/wps-tools/tests/test_s3.py b/backend/packages/wps-tools/tests/test_s3.py new file mode 100644 index 0000000000..a2f0685618 --- /dev/null +++ b/backend/packages/wps-tools/tests/test_s3.py @@ -0,0 +1,85 @@ +from dateutil.tz import tzutc +import datetime + +from wps_tools.s3 import get_hfi_objects + +utc = tzutc() + +test_objects = [ + { + "Key": "sfms/uploads/forecast/2022-09-03/hfi20220903.tif", + "LastModified": datetime.datetime(2022, 9, 7, 18, 6, 26, 556000, tzinfo=utc), + }, + { + "Key": "sfms/uploads/forecast/2022-09-03/hfi20220904.tif", + "LastModified": datetime.datetime(2022, 9, 7, 18, 6, 26, 695000, tzinfo=utc), + }, + { + "Key": "sfms/uploads/forecast/2022-09-03/hfi20220905.tif", + "LastModified": datetime.datetime(2022, 9, 7, 18, 6, 27, 33000, tzinfo=utc), + }, + { + "Key": "sfms/uploads/forecast/2022-09-03/hfi20220906.tif", + "LastModified": datetime.datetime(2022, 9, 7, 18, 6, 27, 513000, tzinfo=utc), + }, +] + + +def test_get_objects_only_hfi(): + objects = [ + { + "Key": "sfms/uploads/forecast/2022-09-03/bui20220903.tif", + "LastModified": datetime.datetime(2022, 9, 7, 18, 6, 26, 556000, tzinfo=utc), + }, + { + "Key": "sfms/uploads/forecast/2022-09-03/hfi20220904.tif", + "LastModified": datetime.datetime(2022, 9, 7, 18, 6, 26, 695000, tzinfo=utc), + }, + ] + res = get_hfi_objects(objects) + assert res[0] == objects[1] + + +def test_get_objects_all_hfi(): + objects = [ + { + "Key": "sfms/uploads/forecast/2022-09-03/hfi20220903.tif", + "LastModified": datetime.datetime(2022, 9, 7, 18, 6, 26, 556000, tzinfo=utc), + }, + { + "Key": "sfms/uploads/forecast/2022-09-03/hfi20220904.tif", + "LastModified": datetime.datetime(2022, 9, 7, 18, 6, 26, 695000, tzinfo=utc), + }, + ] + res = get_hfi_objects(objects) + assert res == objects + + +def test_get_objects_tif_or_tiff(): + objects = [ + { + "Key": "sfms/uploads/forecast/2022-09-03/hfi20220903.tiff", + "LastModified": datetime.datetime(2022, 9, 7, 18, 6, 26, 556000, tzinfo=utc), + }, + { + "Key": "sfms/uploads/forecast/2022-09-03/hfi20220904.tif", + "LastModified": datetime.datetime(2022, 9, 7, 18, 6, 26, 695000, tzinfo=utc), + }, + ] + res = get_hfi_objects(objects) + assert res == objects + + +def test_get_objects_ignore_non_tiff(): + objects = [ + { + "Key": "sfms/uploads/forecast/2022-09-03/hfi20220903.docx", + "LastModified": datetime.datetime(2022, 9, 7, 18, 6, 26, 556000, tzinfo=utc), + }, + { + "Key": "sfms/uploads/forecast/2022-09-03/hfi20220904.docx", + "LastModified": datetime.datetime(2022, 9, 7, 18, 6, 26, 695000, tzinfo=utc), + }, + ] + res = get_hfi_objects(objects) + assert res == [] diff --git a/tileserv/tests/tools/test_tif_pusher.py b/backend/packages/wps-tools/tests/test_tif_pusher.py similarity index 77% rename from tileserv/tests/tools/test_tif_pusher.py rename to backend/packages/wps-tools/tests/test_tif_pusher.py index c60944a277..db25be2c2f 100644 --- a/tileserv/tests/tools/test_tif_pusher.py +++ b/backend/packages/wps-tools/tests/test_tif_pusher.py @@ -1,11 +1,11 @@ import datetime -from tileserv.tools.tif_pusher import build_post_body_for_tiff +from wps_tools.tif_pusher import build_post_body_for_tiff def test_get_post_body_forecast(): run_date = datetime.date(2022, 9, 3) - tif_object = {'Key': 'sfms/uploads/forecast/2022-09-03/hfi20220904.tif'} + tif_object = {"Key": "sfms/uploads/forecast/2022-09-03/hfi20220904.tif"} post_body = build_post_body_for_tiff(tif_object, run_date) assert post_body.get("key") == tif_object.get("Key") @@ -16,7 +16,7 @@ def test_get_post_body_forecast(): def test_get_post_body_actual(): run_date = datetime.date(2022, 9, 3) - tif_object = {'Key': 'sfms/uploads/actual/2022-09-03/hfi20220904.tif'} + tif_object = {"Key": "sfms/uploads/actual/2022-09-03/hfi20220904.tif"} post_body = build_post_body_for_tiff(tif_object, run_date) assert post_body.get("key") == tif_object.get("Key") diff --git a/backend/pyproject.toml b/backend/pyproject.toml new file mode 100644 index 0000000000..7d602ae278 --- /dev/null +++ b/backend/pyproject.toml @@ -0,0 +1,12 @@ +[tool.uv.workspace] +members = ["packages/*"] + +[dependency-groups] +dev = [ + "pytest>=9.0.0,<10", + "pytest-mock>=3,<4", + "pytest-cov>=7.0.0,<8", + "pytest-xdist>=3,<4", + "coverage>=7.6.4,<8", + "ruff>=0.11.5,<1", +] diff --git a/backend/pytest.ini b/backend/pytest.ini new file mode 100644 index 0000000000..a8d45f2bc7 --- /dev/null +++ b/backend/pytest.ini @@ -0,0 +1,15 @@ +[pytest] +testpaths = + packages/wps-api/src + packages/wps-jobs/src + packages/wps-shared/src + packages/wps-tools/tests +python_files = test_*.py *_test.py +python_classes = Test* +python_functions = test_* +addopts = -v --tb=short --import-mode=importlib +pythonpath = + packages/wps-api/src + packages/wps-jobs/src + packages/wps-shared/src + packages/wps-tools/src diff --git a/api/scripts/access_to_csv.py b/backend/scripts/access_to_csv.py similarity index 63% rename from api/scripts/access_to_csv.py rename to backend/scripts/access_to_csv.py index 3f3a0e1680..8808d30641 100644 --- a/api/scripts/access_to_csv.py +++ b/backend/scripts/access_to_csv.py @@ -1,4 +1,4 @@ -""" This is a "throway" script used to export data in an Access database to .csv as a stopgap solution +"""This is a "throwaway" script used to export data in an Access database to .csv as a stopgap solution until such time as the Fire Weather Index calculator is communicating directly to the Wildfire One API. NOTE: This script will only work in an environment with an Access ODBC driver for PyODBC (in other words, @@ -6,6 +6,7 @@ TODO: Remove this script once API is talking directly to the final Wildfire API. """ + import csv import os @@ -18,19 +19,19 @@ # Do a visual check for access odbc drivers: # i had to install the 32bit driver (https://www.microsoft.com/en-US/download/details.aspx?id=13255) to get # accdb -DRIVERS = [x for x in pyodbc.drivers() if x.startswith('Microsoft Access Driver')] +DRIVERS = [x for x in pyodbc.drivers() if x.startswith("Microsoft Access Driver")] print(DRIVERS) def export_table(cursor, table, sql): - """ Function to export all rows from sql query to csv file. """ + """Function to export all rows from sql query to csv file.""" # Get the field names fieldnames = [] for row in cursor.columns(table=table): fieldnames.append(row.column_name) # Open CSV writer - with open('{}.csv'.format(table), 'w') as csvfile: + with open("{}.csv".format(table), "w") as csvfile: writer = csv.writer(csvfile, dialect=csv.unix_dialect) # Write field names @@ -48,22 +49,24 @@ def export_table(cursor, table, sql): # Some debug info so we don't think it's frozen rows_processed = rows_processed + 1 if rows_processed % 10000 == 0: - print('BUSY: rows processed: {}'.format(rows_processed)) + print("BUSY: rows processed: {}".format(rows_processed)) rows = cursor.fetchmany(100) - print('DONE: rows processed: {}'.format(rows_processed)) + print("DONE: rows processed: {}".format(rows_processed)) def main(): - """ Entry point for exporting Access to csv """ - database_location = os.path.join(os.getcwd(), 'BCFireWeather2019_DailyAllStns') - conn_str = 'DRIVER={{Microsoft Access Driver (*.mdb)}};DBQ={};'.format(database_location) + """Entry point for exporting Access to csv""" + database_location = os.path.join(os.getcwd(), "BCFireWeather2019_DailyAllStns") + conn_str = "DRIVER={{Microsoft Access Driver (*.mdb)}};DBQ={};".format(database_location) with pyodbc.connect(conn_str) as connection: with connection.cursor() as cursor: - export_table(cursor, 'Station_BC', - 'SELECT * FROM Station_BC ORDER BY station_code') - export_table(cursor, 'DailyWeather', - 'SELECT * FROM DailyWeather ORDER BY station_code, weather_date') + export_table(cursor, "Station_BC", "SELECT * FROM Station_BC ORDER BY station_code") + export_table( + cursor, + "DailyWeather", + "SELECT * FROM DailyWeather ORDER BY station_code, weather_date", + ) -if __name__ == '__main__': +if __name__ == "__main__": main() diff --git a/api/scripts/common_oc_checks.sh b/backend/scripts/common_oc_checks.sh old mode 100644 new mode 100755 similarity index 99% rename from api/scripts/common_oc_checks.sh rename to backend/scripts/common_oc_checks.sh index 6614ab9e63..24250a6c92 --- a/api/scripts/common_oc_checks.sh +++ b/backend/scripts/common_oc_checks.sh @@ -47,4 +47,4 @@ if eval "${RSH} patronictl list" | grep ${POD} | grep -q 'Leader'; then printf "\n\n" eval "${RSH} patronictl list" exit 1 -fi +fi \ No newline at end of file diff --git a/backend/scripts/copy_db_from_pod_to_local.py b/backend/scripts/copy_db_from_pod_to_local.py new file mode 100644 index 0000000000..6ef081bfde --- /dev/null +++ b/backend/scripts/copy_db_from_pod_to_local.py @@ -0,0 +1,347 @@ +"""Module for getting database dump.""" + +from enum import Enum +import subprocess +import io +import argparse +from typing import List + + +class CopyException(Exception): + """Custom exception for errors""" + + +class Mode(str, Enum): + """Different copy modes""" + + partial = "partial" + complete = "complete" + machine_learning = "ml" + + +def oc_n_project(project: str) -> List: + """Construct['oc', '-n', '']""" + return ["oc", "-n", project] + + +def oc_rsh(project: str, pod: str) -> List: + """Construct['oc', '-n', '', 'rsh', '']""" + return [*oc_n_project(project), "rsh", pod] + + +def get_first_project() -> str: + """Return the first project in the list""" + result = subprocess.run( + ["oc", "get", "projects", "-o", "name"], stdout=subprocess.PIPE, check=True, text=True + ) + project = io.StringIO(result.stdout).readline() + return project[project.rindex("/") + 1 : -1] + + +def list_pods(project: str) -> None: + """print list of pods to screen""" + result = subprocess.run( + [*oc_n_project(project), "get", "pods"], stdout=subprocess.PIPE, check=True, text=True + ) + print(result.stdout) + + +def list_projects() -> None: + """Print list of projects to screen""" + result = subprocess.run( + ["oc", "get", "projects"], stdout=subprocess.PIPE, check=True, text=True + ) + print(result.stdout) + + +def list_cluster_members(project: str, pod: str) -> None: + """List cluster members available""" + print("fetching cluster members...") + result = subprocess.run( + [*oc_rsh(project, pod), "patronictl", "list"], stdout=subprocess.PIPE, check=True, text=True + ) + lines = io.StringIO(result.stdout) + pod_is_leader = False + for line in lines: + print(line[:-1]) + if pod in line and "Leader" in line: + pod_is_leader = True + if pod in line and "Replica" in line: + print("The pod you selected is a Replica. This is good.") + if pod_is_leader: + message = "Please don't use the Leader - choose a different pod." + print(message) + raise CopyException(message) + + +def list_databases(project: str, pod: str) -> None: + """List databases on pod""" + print("fetching list of databases...") + result = subprocess.run( + [*oc_rsh(project, pod), "psql"], + input="\\l", + stdout=subprocess.PIPE, + check=True, + text=True, + timeout=20, + ) + print(result.stdout) + + +def create_lock_file(project: str, pod: str, database: str) -> None: + """Attempt to create a lock file, will fail if already exists""" + try: + lock_file = "/tmp/{}.lock".format(database) + print("creating lock file: {}".format(lock_file)) + subprocess.run( + [*oc_rsh(project, pod), "mkdir", lock_file], + stdout=subprocess.PIPE, + check=True, + text=True, + ) + except subprocess.CalledProcessError: + print( + "failed to create lock {}:{} - another copy may be in progress".format(pod, lock_file) + ) + raise + + +def delete_lock_file(project: str, pod: str, database: str) -> None: + """Attempt to delete lockfile""" + lock_file = "/tmp/{}.lock".format(database) + print("deleting lock {}:{}...".format(pod, lock_file)) + result = subprocess.run( + [*oc_rsh(project, pod), "rmdir", lock_file], stdout=subprocess.PIPE, check=True, text=True + ) + print(result.stdout) + + +def dump_database(project: str, pod: str, database: str, mode: Mode, num_days: int) -> List[str]: + """Dump database to file""" + print("running pg_dump...") + files = ( + [ + "/tmp/dump_db.tar", + ] + if mode != Mode.machine_learning + else [] + ) + if mode == Mode.partial: + print("(partial dump)") + result = subprocess.run( + [ + *oc_rsh(project, pod), + "pg_dump", + "--file=/tmp/dump_db.tar", + "--clean", + "-Ft", + database, + "--exclude-table-data=model_run_grid_subset_predictions", + "--exclude-table-data=weather_station_model_predictions", + ], + stdout=subprocess.PIPE, + check=True, + text=True, + ) + print(result.stdout) + + elif mode == Mode.complete: + print("(complete dump)") + result = subprocess.run( + [ + *oc_rsh(project, pod), + "pg_dump", + "--file=/tmp/dump_db.tar", + "--clean", + "-Ft", + database, + ], + stdout=subprocess.PIPE, + check=True, + text=True, + ) + print(result.stdout) + + process = subprocess.Popen( + [*oc_rsh(project, pod)], + stdin=subprocess.PIPE, + stdout=subprocess.PIPE, + stderr=subprocess.PIPE, + text=True, + ) + if mode == Mode.partial: + # partial model data + tables = ["model_run_grid_subset_predictions", "weather_station_model_predictions"] + for table in tables: + csv_file = "/tmp/{}.csv".format(table) + files.append(csv_file) + sql_command = ( + 'psql {database} -c "\\copy (SELECT * FROM {table} WHERE ' + "prediction_timestamp > current_date -5) to '{csv_file}' with csv\"\n" + ).format(database=database, table=table, csv_file=csv_file) + print("run: {}".format(sql_command)) + process.stdin.write(sql_command) + process.stdin.flush() + elif mode == Mode.machine_learning: + print("(dump weather model data for linear regression ML)") + tables_dict = { + "prediction_model_run_timestamps": { + "col_name": "prediction_run_timestamp", + "date_offset": num_days + 11, + }, + "model_run_grid_subset_predictions": { + "col_name": "prediction_timestamp", + "date_offset": num_days, + }, + "weather_station_model_predictions": { + "col_name": "prediction_timestamp", + "date_offset": num_days, + }, + } + for table_name, values in tables_dict.items(): + csv_file = "/tmp/{}.csv".format(table_name) + files.append(csv_file) + sql_command = ( + 'psql {database} -c "\\copy (SELECT * FROM {table} WHERE ' + "{col_name} > current_date - {max_days_to_learn}) to " + "'{csv_file}' with CSV\"\n" + ).format( + database=database, + table=table_name, + csv_file=csv_file, + max_days_to_learn=values["date_offset"], + col_name=values["col_name"], + ) + print("run: {}".format(sql_command)) + process.stdin.write(sql_command) + process.stdin.flush() + + for filename in files: + print("zip: {}".format(filename)) + process.stdin.write("gzip {}\n".format(filename)) + process.stdin.flush() + + print("waiting for process to complete...") + out, errs = process.communicate() + print(out) + print(errs) + return files + + +def copy_files_to_local(project: str, pod: str, files: List[str]) -> None: + """Copy compressed files to local""" + for filename in files: + print("copying {}.gz...".format(filename)) + result = subprocess.run( + [ + *oc_n_project(project), + "cp", + "{}:{}.gz".format(pod, filename), + "./{}.gz".format(filename), + ], + stdout=subprocess.PIPE, + check=True, + text=True, + ) + print(result.stdout) + + +def delete_remote_files(project: str, pod: str, files: List[str]) -> None: + """Delete all the files we made from the server(cleanup)""" + process = subprocess.Popen( + [*oc_rsh(project, pod)], + stdin=subprocess.PIPE, + stdout=subprocess.PIPE, + stderr=subprocess.PIPE, + text=True, + ) + for filename in files: + print("deleting {}:{}.gz".format(pod, filename)) + process.stdin.write("rm {}.gz\n".format(filename)) + process.stdin.flush() + + print("waiting for process to complete...") + out, errs = process.communicate() + print(out) + print(errs) + + +def unzip_locally(files: List[str]) -> None: + """Unzip all the files locally""" + print("unzipping files locally...") + for filename in files: + print("unzip .{}.gz".format(filename)) + result = subprocess.run( + ["gunzip", ".{}.gz".format(filename)], stdout=subprocess.PIPE, check=True, text=True + ) + print(result.stdout) + + +def get_project() -> str: + """Get project user is going to use""" + list_projects() + project = input("enter project name: ") + if not project: + project = get_first_project() + print(project) + return project + + +def get_pod(project) -> str: + """Get name of the pod""" + list_pods(project) + pod = input("enter pod name: ") + if not pod: + raise CopyException("you have to specify a pod name!") + list_cluster_members(project, pod) + return pod + + +def get_database(project, pod) -> str: + """Get the name of the database""" + list_databases(project, pod) + database = input("enter name of database: ") + if not database: + raise CopyException("you have to specify a database!") + return database + + +def main(): + """ + Entry points - assumes you have openshift command line tools installed and are logged in . + """ + parser = argparse.ArgumentParser( + description="Download complete or partial database dump from a pod in an openshift cluster, or download weather model data only" + ) + parser.add_argument( + "-m", + "--mode", + default="partial", + help="Download complete, partial, or ml (machine learning) (default: partial)", + ) + parser.add_argument( + "-d", + "--days", + default="19", + type=int, + help="Number of days in past to fetch weather model data for (default: 19", + ) + args = parser.parse_args() + mode = Mode(args.mode) + num_days = args.days + + project = get_project() + pod = get_pod(project) + database = get_database(project, pod) + create_lock_file(project, pod, database) + try: + files = dump_database(project, pod, database, mode, num_days) + copy_files_to_local(project, pod, files) + delete_remote_files(project, pod, files) + finally: + delete_lock_file(project, pod, database) + unzip_locally(files) + + +if __name__ == "__main__": + main() diff --git a/api/scripts/copy_db_from_pod_to_local.sh b/backend/scripts/copy_db_from_pod_to_local.sh similarity index 99% rename from api/scripts/copy_db_from_pod_to_local.sh rename to backend/scripts/copy_db_from_pod_to_local.sh index b8679f34c1..cc9199c23c 100755 --- a/api/scripts/copy_db_from_pod_to_local.sh +++ b/backend/scripts/copy_db_from_pod_to_local.sh @@ -111,4 +111,3 @@ gunzip "${FILENAME}.gz" # # change user rights back: # psql -U postgres -c "alter role wps nosuperuser;" - diff --git a/api/scripts/copy_partial_db_from_pod_to_local.sh b/backend/scripts/copy_partial_db_from_pod_to_local.sh similarity index 99% rename from api/scripts/copy_partial_db_from_pod_to_local.sh rename to backend/scripts/copy_partial_db_from_pod_to_local.sh index ec6479d58f..6c78927e03 100755 --- a/api/scripts/copy_partial_db_from_pod_to_local.sh +++ b/backend/scripts/copy_partial_db_from_pod_to_local.sh @@ -125,4 +125,4 @@ do echo "${UNZIP_COMMAND}" eval "${UNZIP_COMMAND}" done -printf "\n\n" +printf "\n\n" \ No newline at end of file diff --git a/api/scripts/database_size_report.sh b/backend/scripts/database_size_report.sh similarity index 98% rename from api/scripts/database_size_report.sh rename to backend/scripts/database_size_report.sh index 6e22856188..2c22fdb337 100755 --- a/api/scripts/database_size_report.sh +++ b/backend/scripts/database_size_report.sh @@ -42,4 +42,4 @@ SIZE_REPORT_QUERY="SELECT *, pg_size_pretty(total_bytes) AS total ) a ) a;" SIZE_REPORT_COMMAND="${RSH} psql ${DATABASE} -c \"${SIZE_REPORT_QUERY}\"" -eval "${SIZE_REPORT_COMMAND}" +eval "${SIZE_REPORT_COMMAND}" \ No newline at end of file diff --git a/api/scripts/extract_sentry_user_emails.py b/backend/scripts/extract_sentry_user_emails.py similarity index 92% rename from api/scripts/extract_sentry_user_emails.py rename to backend/scripts/extract_sentry_user_emails.py index c5e5a7dd9b..bd7d049bc7 100644 --- a/api/scripts/extract_sentry_user_emails.py +++ b/backend/scripts/extract_sentry_user_emails.py @@ -26,7 +26,9 @@ def generate_email_list(sentry_api_token: str, sentry_org_slug: str, sentry_proj email_set = set() for issue in issues: ids.append(issue["id"]) - endpoint = f"https://sentry.io/api/0/organizations/{sentry_org_slug}/issues/{issue['id']}/events/" + endpoint = ( + f"https://sentry.io/api/0/organizations/{sentry_org_slug}/issues/{issue['id']}/events/" + ) response = requests.get(endpoint, headers=headers) if response.status_code == 200: events = response.json() diff --git a/api/scripts/lint b/backend/scripts/lint similarity index 100% rename from api/scripts/lint rename to backend/scripts/lint diff --git a/api/scripts/lint.sh b/backend/scripts/lint.sh similarity index 83% rename from api/scripts/lint.sh rename to backend/scripts/lint.sh index 88f9aaf6de..791069338d 100755 --- a/api/scripts/lint.sh +++ b/backend/scripts/lint.sh @@ -3,4 +3,4 @@ set -euo pipefail -poetry run ruff . \ No newline at end of file +uv run ruff . \ No newline at end of file diff --git a/backend/scripts/percentile_calculator/calculate_percentile_offline.py b/backend/scripts/percentile_calculator/calculate_percentile_offline.py new file mode 100644 index 0000000000..d671cc35de --- /dev/null +++ b/backend/scripts/percentile_calculator/calculate_percentile_offline.py @@ -0,0 +1,171 @@ +""" +This script can be used to update data for the 90th Percentile Calculator from data stored in the dev s3 bucket. +It will updates both the weather_stations.json and the 90th percentile values by station json files. + +- Change the RECENT_YEAR to match the most recent data dump on s3 (s3 folders named by year) + +""" + +import os +import json +import pandas as pd +import asyncio +from scripts.percentile_calculator.station_csv_to_json import generate_station_json +from scripts.percentile_calculator.s3_to_dataframe import ( + load_all_csv_to_dataframe, + get_csv_list_from_s3, + filter_wx_and_station_csv, +) + + +RECENT_YEAR = 2023 # the most recent year that has the core fire season recorded. +RANGES = [ + (RECENT_YEAR - 29, RECENT_YEAR), + (RECENT_YEAR - 19, RECENT_YEAR), + (RECENT_YEAR - 9, RECENT_YEAR), +] +PERCENTILE = 0.9 +NUMBER_OF_DECIMAL_POINT = 5 # for FWI values + + +async def main(): + """The main entrypoint for pre-generating json daily summaries.""" + all_csv_from_s3 = await get_csv_list_from_s3(RECENT_YEAR) + wx_csv_list, station_csv_list = filter_wx_and_station_csv(all_csv_from_s3) + station_json = await generate_station_json(station_csv_list) + + print("Loading all historical weather csv to dataframes from s3") + df = load_all_csv_to_dataframe(wx_csv_list, filter_dailies=True) + + print("Split dates into multiple columns...") + split_dates_into_multiple_cols(df) + + stations = get_stations(station_json) + + for start_year, end_year in RANGES: + year_range = list(range(start_year, end_year + 1)) + year_df = grab_data_in_particular_year_range(df, year_range) + + folder_name = get_output_foldername(start_year, end_year) + + for station in stations: + station_code = int(station["code"]) + station_df = year_df[year_df["STATION_CODE"] == station_code] + + if station_df.empty: + print("Data not available for {} creating empty summary...".format(station_code)) + empty_summary = create_null_summary(station, year_range) + dump_summary_in_json(folder_name, station_code, empty_summary) + continue + + season = get_core_fire_season(station) + station_df = remove_data_outside_fire_season(station_df, season) + percentiles = calculate_percentile(station_df, PERCENTILE) + + years = get_years_for_valid_fwi_values(station_df) + + summary = { + "ffmc": percentiles["ffmc"], + "isi": percentiles["isi"], + "bui": percentiles["bui"], + "years": years, + "station": station, + } + + dump_summary_in_json(folder_name, station_code, summary) + + print("--- Done creating data under {} folder ---".format(folder_name)) + + +def create_null_summary(station, year_range: list): + """Create an empty summary""" + return {"ffmc": None, "isi": None, "bui": None, "years": year_range, "station": station} + + +def dump_summary_in_json(folder_name: str, station_code: int, summary: dict): + """Create a json file with the given summary""" + filename = "{}/{}.json".format(folder_name, station_code) + with open(filename, "w+") as json_file: + json.dump(summary, json_file, indent=4, allow_nan=False) + + +def get_output_foldername(start_year: int, end_year: int) -> str: + """Create an output folder and return its name""" + folder_name = "app/data/{}-{}".format(start_year, end_year) + if not os.path.exists(folder_name): + os.mkdir(folder_name) + return folder_name + + +def get_stations(station_json_path: str) -> list: + """Load stations from json""" + with open(station_json_path) as file_handle: + return json.load(file_handle)["weather_stations"] + + +def get_core_fire_season(station: dict) -> dict: + """Read the core fire season and return them in dict""" + return { + "start_month": int(station["core_season"]["start_month"]), + "start_day": int(station["core_season"]["start_day"]), + "end_month": int(station["core_season"]["end_month"]), + "end_day": int(station["core_season"]["end_day"]), + } + + +def split_dates_into_multiple_cols(df: pd.DataFrame): + """Turn weather_date into datetime type then create 3 columns, year, month, and day""" + df["DATE_TIME"] = df["DATE_TIME"].apply(str) + df["year"] = df["DATE_TIME"].apply(lambda x: int(x[:4])) + df["month"] = df["DATE_TIME"].apply(lambda x: int(x[4:6])) + df["day"] = df["DATE_TIME"].apply(lambda x: int(x[6:])) + + +def grab_data_in_particular_year_range(df: pd.DataFrame, year_range: list) -> pd.DataFrame: + """Grab data recorded between start_year and end_year.""" + return df[df["year"].isin(year_range)] + + +def remove_data_outside_fire_season(df: pd.DataFrame, season: dict): + """Remove data recorded outside of fire season.""" + outside_month = (df["month"] < season["start_month"]) | (df["month"] > season["end_month"]) + df = df.loc[~outside_month] + + before_start = (df["month"] == season["start_month"]) & (df["day"] < season["start_day"]) + df = df.loc[~before_start] + + after_end = (df["month"] == season["end_month"]) & (df["day"] > season["end_day"]) + df = df.loc[~after_end] + + return df + + +def calculate_percentile(df: pd.DataFrame, percentile: float) -> dict: + """Calculate percentile""" + ffmc = df[df["FINE_FUEL_MOISTURE_CODE"].notnull()]["FINE_FUEL_MOISTURE_CODE"].quantile( + percentile + ) + bui = df[df["BUILDUP_INDEX"].notnull()]["BUILDUP_INDEX"].quantile(percentile) + isi = df[df["INITIAL_SPREAD_INDEX"].notnull()]["INITIAL_SPREAD_INDEX"].quantile(percentile) + + ffmc = round(ffmc, NUMBER_OF_DECIMAL_POINT) if not pd.isna(ffmc) else None + bui = round(bui, NUMBER_OF_DECIMAL_POINT) if not pd.isna(bui) else None + isi = round(isi, NUMBER_OF_DECIMAL_POINT) if not pd.isna(isi) else None + + return {"ffmc": ffmc, "bui": bui, "isi": isi} + + +def get_years_for_valid_fwi_values(df: pd.DataFrame) -> list: + """List each year that is sorted""" + ffmc_data_years = df[df["FINE_FUEL_MOISTURE_CODE"].notnull()].year.unique().tolist() + bui_data_years = df[df["BUILDUP_INDEX"].notnull()].year.unique().tolist() + isi_data_years = df[df["INITIAL_SPREAD_INDEX"].notnull()].year.unique().tolist() + # Combine them and remove duplicates + data_years = list(set(ffmc_data_years) | set(bui_data_years) | set(isi_data_years)) + data_years.sort() + + return data_years + + +if __name__ == "__main__": + asyncio.run(main()) diff --git a/api/scripts/percentile_calculator/s3_to_dataframe.py b/backend/scripts/percentile_calculator/s3_to_dataframe.py similarity index 56% rename from api/scripts/percentile_calculator/s3_to_dataframe.py rename to backend/scripts/percentile_calculator/s3_to_dataframe.py index 653570cee1..1fa981a6e4 100644 --- a/api/scripts/percentile_calculator/s3_to_dataframe.py +++ b/backend/scripts/percentile_calculator/s3_to_dataframe.py @@ -2,46 +2,51 @@ from wps_shared.utils.s3 import get_client from wps_shared import config + async def get_csv_list_from_s3(year: int): s3_csv_list = [] async with get_client() as (client, bucket): - response = await client.list_objects_v2(Bucket=bucket, Prefix=f'data_dumps/BCWS_datamart/{year}/BCWS_datamart_historical_wx_obs') + response = await client.list_objects_v2( + Bucket=bucket, Prefix=f"data_dumps/BCWS_datamart/{year}/BCWS_datamart_historical_wx_obs" + ) - for obj in response['Contents']: - file_key = obj['Key'] + for obj in response["Contents"]: + file_key = obj["Key"] - if file_key.endswith('.csv'): + if file_key.endswith(".csv"): s3_csv_list.append(file_key) return s3_csv_list + def filter_wx_and_station_csv(csv_list: list): - wx_obs_csv_list = [csv for csv in csv_list if 'OBS.csv' in csv] - station_csv_list = [csv for csv in csv_list if 'STATIONS.csv' in csv] + wx_obs_csv_list = [csv for csv in csv_list if "OBS.csv" in csv] + station_csv_list = [csv for csv in csv_list if "STATIONS.csv" in csv] return wx_obs_csv_list, station_csv_list + def read_s3_csv_to_pandas(s3_key: str): - server = config.get('OBJECT_STORE_SERVER') - bucket = config.get('OBJECT_STORE_BUCKET') + server = config.get("OBJECT_STORE_SERVER") + bucket = config.get("OBJECT_STORE_BUCKET") - url = f'https://{server}/{bucket}/{s3_key}' + url = f"https://{server}/{bucket}/{s3_key}" df = pd.read_csv(url) - + return df + def load_all_csv_to_dataframe(csv_list: list, filter_dailies: bool = False) -> pd.DataFrame: dfs = [] for csv in csv_list: - df = read_s3_csv_to_pandas(csv) - + if filter_dailies: - # DATE_TIME is provided in PST (GMT-8) and does not recognize DST. + # DATE_TIME is provided in PST (GMT-8) and does not recognize DST. # Daily records will therefor always show up as “YYYYMMDD12” - df = df[df['DATE_TIME'].astype(str).str.endswith('12')] + df = df[df["DATE_TIME"].astype(str).str.endswith("12")] dfs.append(df) all_dailies_df = pd.concat(dfs, ignore_index=True) - return all_dailies_df \ No newline at end of file + return all_dailies_df diff --git a/api/scripts/percentile_calculator/station_csv_to_json.py b/backend/scripts/percentile_calculator/station_csv_to_json.py similarity index 58% rename from api/scripts/percentile_calculator/station_csv_to_json.py rename to backend/scripts/percentile_calculator/station_csv_to_json.py index a76e35c3db..d83b4d3b29 100644 --- a/api/scripts/percentile_calculator/station_csv_to_json.py +++ b/backend/scripts/percentile_calculator/station_csv_to_json.py @@ -1,81 +1,99 @@ -""" This module contains code for generating a weather_stations.json file on it's own. This file contains all active and historical +"""This module contains code for generating a weather_stations.json file on it's own. This file contains all active and historical stations along with metadata. """ + import json import asyncio import geopandas as gpd import pandas as pd from shapely.geometry import Point -from scripts.percentile_calculator.s3_to_dataframe import load_all_csv_to_dataframe, get_csv_list_from_s3, filter_wx_and_station_csv +from scripts.percentile_calculator.s3_to_dataframe import ( + load_all_csv_to_dataframe, + get_csv_list_from_s3, + filter_wx_and_station_csv, +) + +ECODIVISIONS = R"app/data/ERC_ECODIV_polygon/ERC_ECODIV_polygon.shp" +CORE_SEASONS = R"app/data/ecodivisions_core_seasons.json" -ECODIVISIONS = R'app/data/ERC_ECODIV_polygon/ERC_ECODIV_polygon.shp' -CORE_SEASONS = R'app/data/ecodivisions_core_seasons.json' def load_json(json_path: str) -> dict: """Load from a JSON file.""" with open(json_path) as file_handle: return json.load(file_handle) + def filter_stations(station_df: pd.DataFrame) -> pd.DataFrame: """Filter stations based on specific criteria.""" - station_df = station_df.drop_duplicates('STATION_CODE', keep='first') - + station_df = station_df.drop_duplicates("STATION_CODE", keep="first") + # Station names that start with ZZ are not active, and must be skipped. # Quick deploy (temporary) stations are marked QD at the end # Remove stations ending with SF and (WIND), which don't have valid fwi values regex = "^(ZZ)|(.*QD)$|(.*SF)$|(.*\(WIND\))" - return station_df[~station_df['STATION_NAME'].str.match(regex)] + return station_df[~station_df["STATION_NAME"].str.match(regex)] + def fetch_ecodivision_name(latitude: float, longitude: float, ecodivisions: gpd.GeoDataFrame): """Returns the ecodivision name for a given lat/long coordinate.""" station_coord = Point(float(longitude), float(latitude)) for _, ecodivision_row in ecodivisions.iterrows(): - geom = ecodivision_row['geometry'] + geom = ecodivision_row["geometry"] if station_coord.within(geom): - return ecodivision_row['CDVSNNM'] + return ecodivision_row["CDVSNNM"] return None -def process_stations(station_df: pd.DataFrame, ecodivisions: gpd.GeoDataFrame, core_seasons: dict) -> list: + +def process_stations( + station_df: pd.DataFrame, ecodivisions: gpd.GeoDataFrame, core_seasons: dict +) -> list: """Process weather stations and export data.""" weather_stations = [] for _, row in station_df.iterrows(): # Hard-coded fix for station 447 (WATSON LAKE FS) in the Yukon, ecodivision name has to be hard-coded - if row['STATION_CODE'] == "447": + if row["STATION_CODE"] == "447": ecodivision_name = "SUB-ARCTIC HIGHLANDS" else: - ecodivision_name = fetch_ecodivision_name(row['LATITUDE'], row['LONGITUDE'], ecodivisions) + ecodivision_name = fetch_ecodivision_name( + row["LATITUDE"], row["LONGITUDE"], ecodivisions + ) if ecodivision_name is not None: - core_season = core_seasons.get(ecodivision_name, core_seasons['DEFAULT']).get('core_season') + core_season = core_seasons.get(ecodivision_name, core_seasons["DEFAULT"]).get( + "core_season" + ) else: - core_season = core_seasons['DEFAULT']['core_season'] - - weather_stations.append({ - "code": row['STATION_CODE'], - "name": row['STATION_NAME'], - "lat": row['LATITUDE'], - "long": row['LONGITUDE'], - "ecodivision_name": ecodivision_name, - "core_season": core_season, - "elevation": int(row['ELEVATION_M']) - }) + core_season = core_seasons["DEFAULT"]["core_season"] + + weather_stations.append( + { + "code": row["STATION_CODE"], + "name": row["STATION_NAME"], + "lat": row["LATITUDE"], + "long": row["LONGITUDE"], + "ecodivision_name": ecodivision_name, + "core_season": core_season, + "elevation": int(row["ELEVATION_M"]), + } + ) # Order stations by name. - weather_stations.sort(key=lambda station: station['name']) + weather_stations.sort(key=lambda station: station["name"]) return weather_stations + def export_stations_to_json(weather_stations: list, output_path: str): """Export weather stations data to a JSON file.""" - with open(output_path, 'w') as json_file: + with open(output_path, "w") as json_file: # Dump json with an indent making it more human-readable. - json.dump({'weather_stations': weather_stations}, json_file, indent=2) + json.dump({"weather_stations": weather_stations}, json_file, indent=2) async def generate_station_json(station_csv_list: list) -> str: ecodivisions_gdf = gpd.read_file(ECODIVISIONS) core_seasons_json = load_json(CORE_SEASONS) - + weather_stations_df = load_all_csv_to_dataframe(station_csv_list) filtered_stations_df = filter_stations(weather_stations_df) @@ -83,14 +101,14 @@ async def generate_station_json(station_csv_list: list) -> str: weather_stations = process_stations(filtered_stations_df, ecodivisions_gdf, core_seasons_json) # Export processed stations to JSON - export_path = R'app/data/weather_stations.json' + export_path = R"app/data/weather_stations.json" export_stations_to_json(weather_stations, export_path) - print('Station export complete, {} stations exported.'.format(len(weather_stations))) + print("Station export complete, {} stations exported.".format(len(weather_stations))) return export_path + if __name__ == "__main__": all_csv_from_s3 = asyncio.run(get_csv_list_from_s3(2023)) _, station_list = filter_wx_and_station_csv(all_csv_from_s3) asyncio.run(generate_station_json(station_list)) - diff --git a/api/scripts/restore_db.sh b/backend/scripts/restore_db.sh similarity index 99% rename from api/scripts/restore_db.sh rename to backend/scripts/restore_db.sh index 286c73096e..23c2d33589 100755 --- a/api/scripts/restore_db.sh +++ b/backend/scripts/restore_db.sh @@ -98,4 +98,4 @@ then eval "${GRANT}" fi -exit 0 +exit 0 \ No newline at end of file diff --git a/api/scripts/restore_db_backup.sh b/backend/scripts/restore_db_backup.sh similarity index 100% rename from api/scripts/restore_db_backup.sh rename to backend/scripts/restore_db_backup.sh diff --git a/api/scripts/restore_db_backup_ubuntu.sh b/backend/scripts/restore_db_backup_ubuntu.sh similarity index 94% rename from api/scripts/restore_db_backup_ubuntu.sh rename to backend/scripts/restore_db_backup_ubuntu.sh index 75edc0fd8b..94e0753768 100755 --- a/api/scripts/restore_db_backup_ubuntu.sh +++ b/backend/scripts/restore_db_backup_ubuntu.sh @@ -21,4 +21,4 @@ gunzip -c "${FILENAME}" | psql -v ON_ERROR_STOP=1 -x -h localhost -U wps -d wps sudo -u postgres psql -U postgres -c "alter role wps nosuperuser;" sudo -u postgres psql -U postgres -d wps -c "create user wpsread with password 'wps';" -sudo -u postgres psql -U postgres -d wps -c "grant connect on database wps to wpsread; grant usage on schema public to wpsread; grant select on all tables in schema public to wpsread;" +sudo -u postgres psql -U postgres -d wps -c "grant connect on database wps to wpsread; grant usage on schema public to wpsread; grant select on all tables in schema public to wpsread;" \ No newline at end of file diff --git a/api/scripts/test.sh b/backend/scripts/test.sh similarity index 100% rename from api/scripts/test.sh rename to backend/scripts/test.sh diff --git a/backend/uv.lock b/backend/uv.lock new file mode 100644 index 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b/docker-compose.yml @@ -7,21 +7,21 @@ volumes: services: api: build: - context: api - dockerfile: Dockerfile + context: backend + dockerfile: packages/wps-api/Dockerfile env_file: - - ./api/app/.env.docker + - ./backend/packages/wps-api/src/app/.env.docker environment: - PYTHONPYCACHEPREFIX=python_cache ports: - "8080:8080" volumes: - - ./api:/app:delegated + - ./backend:/app:delegated - static:/app/static # point to docker volume for static files - python_cache:/app/python_cache networks: - wps_network - command: bash -c "PYTHONPATH=. poetry run alembic upgrade head && poetry run uvicorn app.main:app --host 0.0.0.0 --reload --port 8080" + command: bash -c "PYTHONPATH=. uv run alembic upgrade head && uv run uvicorn app.main:app --host 0.0.0.0 --reload --port 8080" redis: image: redis ports: diff --git a/openshift/templates/advisory_fuel_areas_job.yaml b/openshift/templates/advisory_fuel_areas_job.yaml index a23e8ab2c4..7c463e0b73 100644 --- a/openshift/templates/advisory_fuel_areas_job.yaml +++ b/openshift/templates/advisory_fuel_areas_job.yaml @@ -28,17 +28,23 @@ objects: completions: 1 backoffLimit: 6 template: + metadata: + labels: + app: ${NAME}-${SUFFIX} spec: containers: - name: advisory-fuel-areas-container image: image-registry.openshift-image-registry.svc:5000/e1e498-tools/wps-api-${SUFFIX}:${SUFFIX} command: - - poetry + - uv - run + - --no-sync - python - "-m" - app.jobs.fuel_type_areas_per_zone env: + - name: UV_NO_CACHE + value: "1" - name: POSTGRES_DATABASE value: ${NAME} - name: POSTGRES_WRITE_USER diff --git a/openshift/templates/c_haines.cronjob.yaml b/openshift/templates/c_haines.cronjob.yaml index d7cd4f3b8a..20309d1dec 100644 --- a/openshift/templates/c_haines.cronjob.yaml +++ b/openshift/templates/c_haines.cronjob.yaml @@ -68,11 +68,22 @@ objects: requests: cpu: "75m" memory: 1Gi - image: ${IMAGE_REGISTRY}/${PROJ_TOOLS}/${IMAGE_NAME}:${IMAGE_TAG} + image: ${IMAGE_REGISTRY}/${PROJ_TOOLS}/${NAME}-api-${SUFFIX}:${SUFFIX} imagePullPolicy: "Always" command: - ["poetry", "run", "python", "-m", "app.c_haines.worker"] + [ + "uv", + "run", + "--package", + "wps-api", + "--no-sync", + "python", + "-m", + "app.c_haines.worker", + ] env: + - name: UV_NO_CACHE + value: "1" - name: POSTGRES_READ_USER valueFrom: secretKeyRef: diff --git a/openshift/templates/ecmwf.cronjob.yaml b/openshift/templates/ecmwf.cronjob.yaml index f7c9f0e87c..71a92acddc 100644 --- a/openshift/templates/ecmwf.cronjob.yaml +++ b/openshift/templates/ecmwf.cronjob.yaml @@ -61,13 +61,16 @@ objects: imagePullPolicy: "Always" command: [ - "poetry", + "uv", "run", + "--no-sync", "python", "-m", - "wps_jobs.weather_model_jobs.ecmwf", + "weather_model_jobs.ecmwf", ] env: + - name: UV_NO_CACHE + value: "1" - name: POSTGRES_READ_USER valueFrom: secretKeyRef: diff --git a/openshift/templates/env_canada_gdps.cronjob.yaml b/openshift/templates/env_canada_gdps.cronjob.yaml index 01d6d35276..284134c526 100644 --- a/openshift/templates/env_canada_gdps.cronjob.yaml +++ b/openshift/templates/env_canada_gdps.cronjob.yaml @@ -63,14 +63,17 @@ objects: imagePullPolicy: "Always" command: [ - "poetry", + "uv", "run", + "--no-sync", "python", "-m", - "wps_jobs.weather_model_jobs.env_canada", + "weather_model_jobs.env_canada", "GDPS", ] env: + - name: UV_NO_CACHE + value: "1" - name: POSTGRES_READ_USER valueFrom: secretKeyRef: diff --git a/openshift/templates/env_canada_hrdps.cronjob.yaml b/openshift/templates/env_canada_hrdps.cronjob.yaml index 45d6a0444f..d994bc49ff 100644 --- a/openshift/templates/env_canada_hrdps.cronjob.yaml +++ b/openshift/templates/env_canada_hrdps.cronjob.yaml @@ -63,14 +63,17 @@ objects: imagePullPolicy: "Always" command: [ - "poetry", + "uv", "run", + "--no-sync", "python", "-m", - "wps_jobs.weather_model_jobs.env_canada", + "weather_model_jobs.env_canada", "HRDPS", ] env: + - name: UV_NO_CACHE + value: "1" - name: POSTGRES_READ_USER valueFrom: secretKeyRef: diff --git a/openshift/templates/env_canada_rdps.cronjob.yaml b/openshift/templates/env_canada_rdps.cronjob.yaml index bb42a8c283..00eb342520 100644 --- a/openshift/templates/env_canada_rdps.cronjob.yaml +++ b/openshift/templates/env_canada_rdps.cronjob.yaml @@ -64,14 +64,17 @@ objects: imagePullPolicy: "Always" command: [ - "poetry", + "uv", "run", + "--no-sync", "python", "-m", - "wps_jobs.weather_model_jobs.env_canada", + "weather_model_jobs.env_canada", "RDPS", ] env: + - name: UV_NO_CACHE + value: "1" - name: POSTGRES_READ_USER valueFrom: secretKeyRef: diff --git a/openshift/templates/fire_watch_weather.cronjob.yaml b/openshift/templates/fire_watch_weather.cronjob.yaml index abc63be59e..f1e6da5722 100644 --- a/openshift/templates/fire_watch_weather.cronjob.yaml +++ b/openshift/templates/fire_watch_weather.cronjob.yaml @@ -59,13 +59,16 @@ objects: imagePullPolicy: "Always" command: [ - "poetry", + "uv", "run", + "--no-sync", "python", "-m", "app.jobs.fire_watch_calculations", ] env: + - name: UV_NO_CACHE + value: "1" - name: ROCKET_URL_POST_MESSAGE valueFrom: configMapKeyRef: diff --git a/openshift/templates/grass_curing.cronjob.yaml b/openshift/templates/grass_curing.cronjob.yaml index 39c01b2597..059436ac47 100644 --- a/openshift/templates/grass_curing.cronjob.yaml +++ b/openshift/templates/grass_curing.cronjob.yaml @@ -58,8 +58,10 @@ objects: image: ${IMAGE_REGISTRY}/${PROJ_TOOLS}/${NAME}-api-${SUFFIX}:${SUFFIX} imagePullPolicy: "Always" command: - ["poetry", "run", "python", "-m", "app.jobs.grass_curing"] + ["uv", "run", "--package", "wps-api", "--no-sync", "python", "-m", "app.jobs.grass_curing"] env: + - name: UV_NO_CACHE + value: "1" - name: POSTGRES_READ_USER valueFrom: secretKeyRef: diff --git a/openshift/templates/nats.yaml b/openshift/templates/nats.yaml index 52eafc2334..d35f45ca8c 100644 --- a/openshift/templates/nats.yaml +++ b/openshift/templates/nats.yaml @@ -294,13 +294,16 @@ objects: memory: ${MEMORY_LIMIT} command: [ - "poetry", + "uv", "run", + "--no-sync", "python", "-m", "app.auto_spatial_advisory.nats_consumer", ] env: + - name: UV_NO_CACHE + value: "1" - name: NATS_STREAM_PREFIX value: ${APP_NAME}-${SUFFIX} - name: NATS_SERVER diff --git a/openshift/templates/noaa_gfs.cronjob.yaml b/openshift/templates/noaa_gfs.cronjob.yaml index a65cd9be14..2eb8581f0f 100644 --- a/openshift/templates/noaa_gfs.cronjob.yaml +++ b/openshift/templates/noaa_gfs.cronjob.yaml @@ -63,14 +63,17 @@ objects: imagePullPolicy: "Always" command: [ - "poetry", + "uv", "run", + "--no-sync", "python", "-m", - "wps_jobs.weather_model_jobs.noaa", + "weather_model_jobs.noaa", "GFS", ] env: + - name: UV_NO_CACHE + value: "1" - name: POSTGRES_READ_USER valueFrom: secretKeyRef: diff --git a/openshift/templates/noaa_nam.cronjob.yaml b/openshift/templates/noaa_nam.cronjob.yaml index a8a292319a..123ada5a40 100644 --- a/openshift/templates/noaa_nam.cronjob.yaml +++ b/openshift/templates/noaa_nam.cronjob.yaml @@ -60,14 +60,17 @@ objects: imagePullPolicy: "Always" command: [ - "poetry", + "uv", "run", + "--no-sync", "python", "-m", - "wps_jobs.weather_model_jobs.noaa", + "weather_model_jobs.noaa", "NAM", ] env: + - name: UV_NO_CACHE + value: "1" - name: POSTGRES_READ_USER valueFrom: secretKeyRef: diff --git a/openshift/templates/rdps_sfms.cronjob.yaml b/openshift/templates/rdps_sfms.cronjob.yaml index 5c62baa012..5500d4541f 100644 --- a/openshift/templates/rdps_sfms.cronjob.yaml +++ b/openshift/templates/rdps_sfms.cronjob.yaml @@ -58,8 +58,10 @@ objects: image: ${IMAGE_REGISTRY}/${PROJ_TOOLS}/${NAME}-api-${SUFFIX}:${SUFFIX} imagePullPolicy: "Always" command: - ["poetry", "run", "python", "-m", "app.jobs.rdps_sfms"] + ["uv", "run", "--package", "wps-api", "--no-sync", "python", "-m", "app.jobs.rdps_sfms"] env: + - name: UV_NO_CACHE + value: "1" - name: POSTGRES_READ_USER valueFrom: secretKeyRef: diff --git a/openshift/templates/sfms_calculations.cronjob.yaml b/openshift/templates/sfms_calculations.cronjob.yaml index bf2e616bb3..2caf14c68a 100644 --- a/openshift/templates/sfms_calculations.cronjob.yaml +++ b/openshift/templates/sfms_calculations.cronjob.yaml @@ -55,13 +55,16 @@ objects: imagePullPolicy: "Always" command: [ - "poetry", + "uv", "run", + "--no-sync", "python", "-m", "app.jobs.sfms_calculations", ] env: + - name: UV_NO_CACHE + value: "1" - name: ROCKET_URL_POST_MESSAGE valueFrom: configMapKeyRef: diff --git a/openshift/templates/viirs_snow.cronjob.yaml b/openshift/templates/viirs_snow.cronjob.yaml index f431d51e14..ea1ca7b06b 100644 --- a/openshift/templates/viirs_snow.cronjob.yaml +++ b/openshift/templates/viirs_snow.cronjob.yaml @@ -58,8 +58,10 @@ objects: image: ${IMAGE_REGISTRY}/${PROJ_TOOLS}/${NAME}-api-${SUFFIX}:${SUFFIX} imagePullPolicy: "Always" command: - ["poetry", "run", "python", "-m", "app.jobs.viirs_snow"] + ["uv", "run", "--package", "wps-api", "--no-sync", "python", "-m", "app.jobs.viirs_snow"] env: + - name: UV_NO_CACHE + value: "1" - name: POSTGRES_READ_USER valueFrom: secretKeyRef: diff --git a/openshift/templates/wfwx_hourly_actuals.cronjob.yaml b/openshift/templates/wfwx_hourly_actuals.cronjob.yaml index 8e7f35f97d..c3a080a939 100644 --- a/openshift/templates/wfwx_hourly_actuals.cronjob.yaml +++ b/openshift/templates/wfwx_hourly_actuals.cronjob.yaml @@ -54,8 +54,19 @@ objects: image: ${IMAGE_REGISTRY}/${PROJ_TOOLS}/${NAME}-${SUFFIX}:${SUFFIX} imagePullPolicy: "Always" command: - ["poetry", "run", "python", "-m", "app.jobs.hourly_actuals"] + [ + "uv", + "run", + "--package", + "wps-api", + "--no-sync", + "python", + "-m", + "app.jobs.hourly_actuals", + ] env: + - name: UV_NO_CACHE + value: "1" - name: WFWX_MAX_PAGE_SIZE value: ${WFWX_MAX_PAGE_SIZE} - name: WFWX_BASE_URL diff --git a/openshift/templates/wfwx_noon_forecasts.cronjob.yaml b/openshift/templates/wfwx_noon_forecasts.cronjob.yaml index 80bdae9501..1c554fe5d3 100644 --- a/openshift/templates/wfwx_noon_forecasts.cronjob.yaml +++ b/openshift/templates/wfwx_noon_forecasts.cronjob.yaml @@ -60,8 +60,19 @@ objects: image: ${IMAGE_REGISTRY}/${PROJ_TOOLS}/${NAME}-${SUFFIX}:${SUFFIX} imagePullPolicy: "Always" command: - ["poetry", "run", "python", "-m", "app.jobs.noon_forecasts"] + [ + "uv", + "run", + "--package", + "wps-api", + "--no-sync", + "python", + "-m", + "app.jobs.noon_forecasts", + ] env: + - name: UV_NO_CACHE + value: "1" - name: WFWX_MAX_PAGE_SIZE value: ${WFWX_MAX_PAGE_SIZE} - name: WFWX_AUTH_URL diff --git a/setup/mac.sh b/setup/mac.sh index 5d3b05794c..27ce25ccf8 100755 --- a/setup/mac.sh +++ b/setup/mac.sh @@ -25,9 +25,8 @@ brew install pyenv pyenv install 3.12.3 pyenv global 3.12.3 -### poetry -curl -sSL https://install.python-poetry.org | python - -echo "poetry installed, run poetry-workspaces-setup.sh in wps/setup" +### uv +brew install uv ### r brew install --cask r diff --git a/tileserv/.env.example b/tileserv/.env.example deleted file mode 100644 index 38efdac45a..0000000000 --- a/tileserv/.env.example +++ /dev/null @@ -1 +0,0 @@ -TILESERV_WRITE_HOST=localhost \ No newline at end of file diff --git a/tileserv/__init__.py b/tileserv/__init__.py deleted file mode 100644 index d6d6eca391..0000000000 --- a/tileserv/__init__.py +++ /dev/null @@ -1,2 +0,0 @@ -""" Everything tileserv -""" diff --git a/tileserv/alembic.ini b/tileserv/alembic.ini deleted file mode 100644 index 5f3a09c0ea..0000000000 --- a/tileserv/alembic.ini +++ /dev/null @@ -1,109 +0,0 @@ -# A generic, single database configuration. - -[alembic] -# path to migration scripts -script_location = alembic - -# template used to generate migration file names; The default value is %%(rev)s_%%(slug)s -# Uncomment the line below if you want the files to be prepended with date and time -# see https://alembic.sqlalchemy.org/en/latest/tutorial.html#editing-the-ini-file -# for all available tokens -# file_template = %%(year)d_%%(month).2d_%%(day).2d_%%(hour).2d%%(minute).2d-%%(rev)s_%%(slug)s - -# sys.path path, will be prepended to sys.path if present. -# defaults to the current working directory. -prepend_sys_path = . - -# timezone to use when rendering the date within the migration file -# as well as the filename. -# If specified, requires the python-dateutil library that can be -# installed by adding `alembic[tz]` to the pip requirements -# string value is passed to dateutil.tz.gettz() -# leave blank for localtime -# timezone = - -# max length of characters to apply to the -# "slug" field -# truncate_slug_length = 40 - -# set to 'true' to run the environment during -# the 'revision' command, regardless of autogenerate -# revision_environment = false - -# set to 'true' to allow .pyc and .pyo files without -# a source .py file to be detected as revisions in the -# versions/ directory -# sourceless = false - -# version location specification; This defaults -# to alembic/versions. When using multiple version -# directories, initial revisions must be specified with --version-path. -# The path separator used here should be the separator specified by "version_path_separator" below. -# version_locations = %(here)s/bar:%(here)s/bat:alembic/versions - -# version path separator; As mentioned above, this is the character used to split -# version_locations. The default within new alembic.ini files is "os", which uses os.pathsep. -# If this key is omitted entirely, it falls back to the legacy behavior of splitting on spaces and/or commas. -# Valid values for version_path_separator are: -# -# version_path_separator = : -# version_path_separator = ; -# version_path_separator = space -version_path_separator = os # Use os.pathsep. Default configuration used for new projects. - -# the output encoding used when revision files -# are written from script.py.mako -# output_encoding = utf-8 - -sqlalchemy.url = driver://user:pass@localhost/dbname - - -[post_write_hooks] -# post_write_hooks defines scripts or Python functions that are run -# on newly generated revision scripts. See the documentation for further -# detail and examples - -# format using "black" - use the console_scripts runner, against the "black" entrypoint -# hooks = black -# black.type = console_scripts -# black.entrypoint = black -# black.options = -l 79 REVISION_SCRIPT_FILENAME - -# Logging configuration -[loggers] -keys = root,sqlalchemy,alembic - -[handlers] -keys = console - -[formatters] -keys = generic - -[logger_root] -level = WARN -handlers = console -qualname = - -[logger_sqlalchemy] -level = WARN -handlers = -qualname = sqlalchemy.engine - -[logger_alembic] -level = INFO -handlers = -qualname = alembic - -[handler_console] -class = StreamHandler -args = (sys.stderr,) -level = NOTSET -formatter = generic - -[formatter_generic] -format = %(levelname)-5.5s [%(name)s] %(message)s -datefmt = %H:%M:%S - -[alembic:exclude] -# spatial_ref_sys is created by postgis, and alembic must ignore it -tables = spatial_ref_sys diff --git a/tileserv/alembic/README b/tileserv/alembic/README deleted file mode 100644 index 98e4f9c44e..0000000000 --- a/tileserv/alembic/README +++ /dev/null @@ -1 +0,0 @@ -Generic single-database configuration. \ No newline at end of file diff --git a/tileserv/alembic/env.py b/tileserv/alembic/env.py deleted file mode 100644 index 5c4a024eb5..0000000000 --- a/tileserv/alembic/env.py +++ /dev/null @@ -1,104 +0,0 @@ -from logging.config import fileConfig - -from sqlalchemy import engine_from_config -from sqlalchemy import pool -import db -import models - -from alembic import context - -# this is the Alembic Config object, which provides -# access to the values within the .ini file in use. -config = context.config -config.set_main_option("sqlalchemy.url", db.DATABASE_URL.replace("%", "%%")) - -# Interpret the config file for Python logging. -# This line sets up loggers basically. -if config.config_file_name is not None: - fileConfig(config.config_file_name) - -# add your model's MetaData object here -# for 'autogenerate' support -# from myapp import mymodel -# target_metadata = mymodel.Base.metadata -target_metadata = models.Base.metadata - -# other values from the config, defined by the needs of env.py, -# can be acquired: -# my_important_option = config.get_main_option("my_important_option") -# ... etc. - - -def exclude_tables_from_config(config_): - """There are tables (e.g. spatial_ref_sys created by postgis), that must be ignored.""" - tables_ = config_.get("tables", None) - if tables_ is not None: - tables = tables_.split(",") - return tables - - -# load tables to be excluded -exclude_tables = exclude_tables_from_config(config.get_section("alembic:exclude")) - - -def include_object(object, name, type_, reflected, compare_to): - """any tables not in the ignore list, are to be included""" - if type_ == "table" and name in exclude_tables: - return False - else: - return True - - -def run_migrations_offline() -> None: - """Run migrations in 'offline' mode. - - This configures the context with just a URL - and not an Engine, though an Engine is acceptable - here as well. By skipping the Engine creation - we don't even need a DBAPI to be available. - - Calls to context.execute() here emit the given string to the - script output. - - """ - url = config.get_main_option("sqlalchemy.url") - context.configure( - url=url, - target_metadata=target_metadata, - literal_binds=True, - dialect_opts={"paramstyle": "named"}, - include_object=include_object, - ) - - with context.begin_transaction(): - context.run_migrations() - - -def run_migrations_online() -> None: - """Run migrations in 'online' mode. - - In this scenario we need to create an Engine - and associate a connection with the context. - - """ - connectable = engine_from_config( - config.get_section(config.config_ini_section), - prefix="sqlalchemy.", - poolclass=pool.NullPool, - ) - - with connectable.connect() as connection: - context.configure( - connection=connection, - target_metadata=target_metadata, - include_object=include_object, - ) - - with context.begin_transaction(): - context.run_migrations() - - -if context.is_offline_mode(): - run_migrations_offline() -else: - run_migrations_online() diff --git a/tileserv/alembic/script.py.mako b/tileserv/alembic/script.py.mako deleted file mode 100644 index 55df2863d2..0000000000 --- a/tileserv/alembic/script.py.mako +++ /dev/null @@ -1,24 +0,0 @@ -"""${message} - -Revision ID: ${up_revision} -Revises: ${down_revision | comma,n} -Create Date: ${create_date} - -""" -from alembic import op -import sqlalchemy as sa -${imports if imports else ""} - -# revision identifiers, used by Alembic. -revision = ${repr(up_revision)} -down_revision = ${repr(down_revision)} -branch_labels = ${repr(branch_labels)} -depends_on = ${repr(depends_on)} - - -def upgrade() -> None: - ${upgrades if upgrades else "pass"} - - -def downgrade() -> None: - ${downgrades if downgrades else "pass"} diff --git a/tileserv/alembic/versions/1c0954110d4e_classified_hfi_table.py b/tileserv/alembic/versions/1c0954110d4e_classified_hfi_table.py deleted file mode 100644 index d0f8a90c5e..0000000000 --- a/tileserv/alembic/versions/1c0954110d4e_classified_hfi_table.py +++ /dev/null @@ -1,48 +0,0 @@ -"""Classified HFI table - -Revision ID: 1c0954110d4e -Revises: fdb4438ff783 -Create Date: 2022-11-23 11:57:21.068362 - -""" -from alembic import op -import sqlalchemy as sa -import geoalchemy2 -from models import TZTimeStamp - - -# revision identifiers, used by Alembic. -revision = '1c0954110d4e' -down_revision = 'fdb4438ff783' -branch_labels = None -depends_on = None - - -def upgrade() -> None: - # ### commands auto generated by Alembic - please adjust! ### - op.create_table('hfi', - sa.Column('id', sa.Integer(), nullable=False), - sa.Column('hfi', sa.String(), nullable=True), - sa.Column('geom', geoalchemy2.types.Geometry(geometry_type='MULTIPOLYGON', srid=3005, - spatial_index=False, from_text='ST_GeomFromEWKT', name='geometry'), nullable=False), - sa.Column('run_date', TZTimeStamp(), nullable=False), - sa.Column('for_date', TZTimeStamp(), nullable=False), - sa.Column('run_type', sa.Enum('forecast', 'actual', name='runtype'), nullable=False), - sa.PrimaryKeyConstraint('id'), - comment='Processed HFI by run date and time' - ) - op.create_index('idx_hfi_geom', 'hfi', ['geom'], unique=False, postgresql_using='gist') - op.create_index(op.f('ix_hfi_hfi'), 'hfi', ['hfi'], unique=False) - op.create_index('sfms_run_multiindex', 'hfi', ['run_date', 'for_date', 'run_type'], unique=False) - # ### end Alembic commands ### - - -def downgrade() -> None: - # ### commands auto generated by Alembic - please adjust! ### - op.drop_index('sfms_run_multiindex', table_name='hfi') - op.drop_index(op.f('ix_hfi_hfi'), table_name='hfi') - op.drop_index('idx_hfi_geom', table_name='hfi', postgresql_using='gist') - op.drop_table('hfi') - # drop the enum explicitly, alembic doesn't know how to do this - op.execute('DROP TYPE runtype') - # ### end Alembic commands ### diff --git a/tileserv/alembic/versions/3893bbb60779_firezone_table.py b/tileserv/alembic/versions/3893bbb60779_firezone_table.py deleted file mode 100644 index 445de66a6b..0000000000 --- a/tileserv/alembic/versions/3893bbb60779_firezone_table.py +++ /dev/null @@ -1,50 +0,0 @@ -"""FireZone table - -Revision ID: 3893bbb60779 -Revises: d7a9b15ae82f -Create Date: 2022-11-23 14:19:54.373088 - -""" -from alembic import op -import sqlalchemy as sa -from sqlalchemy.dialects import postgresql -import geoalchemy2 -from models import TZTimeStamp - -# revision identifiers, used by Alembic. -revision = '3893bbb60779' -down_revision = 'd7a9b15ae82f' -branch_labels = None -depends_on = None - - -def upgrade() -> None: - # ### commands auto generated by Alembic ### - op.create_table('fire_zones', - sa.Column('id', sa.Integer(), nullable=False), - sa.Column('feature_id', sa.Integer(), nullable=False), - sa.Column('geom', geoalchemy2.types.Geometry(geometry_type='MULTIPOLYGON', srid=4326, - spatial_index=False, from_text='ST_GeomFromEWKT', name='geometry'), nullable=False), - sa.Column('create_date', TZTimeStamp(), nullable=False), - sa.Column('update_date', TZTimeStamp(), nullable=False), - sa.Column('mof_fire_zone_id', sa.Integer(), nullable=True), - sa.Column('mof_fire_zone_name', sa.String(), nullable=True), - sa.Column('mof_fire_centre_name', sa.String(), nullable=True), - sa.Column('headquarters_city_name', sa.String(), nullable=True), - sa.Column('objectid', sa.Integer(), nullable=True), - sa.Column('feature_area_sqm', postgresql.DOUBLE_PRECISION(), nullable=True), - sa.Column('feature_length_m', postgresql.DOUBLE_PRECISION(), nullable=True), - sa.Column('geometry.area', sa.Integer(), nullable=True), - sa.Column('geometry.len', sa.Integer(), nullable=True), - sa.PrimaryKeyConstraint('id'), - comment='BC fire zone boundaries' - ) - op.create_index('idx_fire_zones_geom', 'fire_zones', ['geom'], unique=False, postgresql_using='gist') - # ### end Alembic commands ### - - -def downgrade() -> None: - # ### commands auto generated by Alembic ### - op.drop_index('idx_fire_zones_geom', table_name='fire_zones', postgresql_using='gist') - op.drop_table('fire_zones') - # ### end Alembic commands ### diff --git a/tileserv/alembic/versions/4e9825746735_drop_zones.py b/tileserv/alembic/versions/4e9825746735_drop_zones.py deleted file mode 100644 index c0a5c4b08a..0000000000 --- a/tileserv/alembic/versions/4e9825746735_drop_zones.py +++ /dev/null @@ -1,72 +0,0 @@ -"""drop zones - -Revision ID: 4e9825746735 -Revises: c6e39ac9dc29 -Create Date: 2023-01-30 12:43:21.159086 - -""" -import sqlalchemy as sa -from alembic import op -from sqlalchemy.orm.session import Session -from sqlalchemy.dialects import postgresql -import geoalchemy2 -from models import TZTimeStamp - -# revision identifiers, used by Alembic. -revision = '4e9825746735' -down_revision = 'c6e39ac9dc29' -branch_labels = None -depends_on = None - -fire_zone_table = sa.Table('fire_zones', sa.MetaData(), - sa.Column('id', sa.Integer(), nullable=False), - sa.Column('feature_id', sa.Integer(), nullable=False), - sa.Column('geom', geoalchemy2.types.Geometry(geometry_type='MULTIPOLYGON', srid=4326, - spatial_index=False, from_text='ST_GeomFromEWKT', - name='geometry'), nullable=False), - sa.Column('create_date', TZTimeStamp(), nullable=False), - sa.Column('update_date', TZTimeStamp(), nullable=False), - sa.Column('mof_fire_zone_id', sa.Integer(), nullable=True), - sa.Column('mof_fire_zone_name', sa.String(), nullable=True), - sa.Column('mof_fire_centre_name', sa.String(), nullable=True), - sa.Column('headquarters_city_name', sa.String(), nullable=True), - sa.Column('objectid', sa.Integer(), nullable=True), - sa.Column('feature_area_sqm', postgresql.DOUBLE_PRECISION(), nullable=True), - sa.Column('feature_length_m', postgresql.DOUBLE_PRECISION(), nullable=True), - sa.Column('geometry.area', sa.Integer(), nullable=True), - sa.Column('geometry.len', sa.Integer(), nullable=True)) - -fire_zone_labels_table = sa.Table('fire_zones_labels', sa.MetaData(), - sa.Column('id', sa.Integer(), nullable=False), - sa.Column('feature_id', sa.Integer(), nullable=False), - sa.Column('geom', geoalchemy2.types.Geometry(geometry_type='POINT', srid=4326, - spatial_index=False, from_text='ST_GeomFromEWKT', name='geometry'), nullable=False), - sa.Column('create_date', TZTimeStamp(), nullable=False), - sa.Column('update_date', TZTimeStamp(), nullable=False), - sa.Column('mof_fire_zone_id', sa.Integer(), nullable=True), - sa.Column('mof_fire_zone_name', sa.String(), nullable=True), - sa.Column('mof_fire_centre_name', sa.String(), nullable=True), - sa.Column('headquarters_city_name', sa.String(), nullable=True), - sa.Column('objectid', sa.Integer(), nullable=True), - sa.Column('feature_area_sqm', postgresql.DOUBLE_PRECISION(), nullable=True), - sa.Column('feature_length_m', postgresql.DOUBLE_PRECISION(), nullable=True), - sa.Column('geometry.area', sa.Integer(), nullable=True), - sa.Column('geometry.len', sa.Integer(), nullable=True), - sa.PrimaryKeyConstraint('id'), - comment='BC fire zone labels' - ) - - -def upgrade() -> None: - # ### commands auto generated by Alembic ### - session = Session(bind=op.get_bind()) - session.query(fire_zone_table).delete() - session.query(fire_zone_labels_table).delete() - session.commit() - # ### end Alembic commands ### - - -def downgrade() -> None: - # ### commands auto generated by Alembic ### - pass - # ### end Alembic commands ### diff --git a/tileserv/alembic/versions/8a1117356bfa_fire_tables_data_import.py b/tileserv/alembic/versions/8a1117356bfa_fire_tables_data_import.py deleted file mode 100644 index 8f23e73a44..0000000000 --- a/tileserv/alembic/versions/8a1117356bfa_fire_tables_data_import.py +++ /dev/null @@ -1,245 +0,0 @@ -"""Fire tables data import - -Revision ID: 8a1117356bfa -Revises: 950a9e61996c -Create Date: 2022-11-23 14:51:50.365858 - -""" -from typing import Final -from alembic import op -import sqlalchemy as sa -from sqlalchemy import Table -from sqlalchemy.orm.session import Session -from sqlalchemy.sql import select -from sqlalchemy.dialects import postgresql -import geoalchemy2 -import urllib.parse -import urllib.request -import json -from shapely.geometry import shape -from shapely.geometry.multipolygon import MultiPolygon -from shapely.geometry.polygon import Polygon -from shapely.geometry.base import BaseGeometry -from shapely import wkb -import pytz -from datetime import datetime -from models import TZTimeStamp - - -# revision identifiers, used by Alembic. -revision = '8a1117356bfa' -down_revision = '950a9e61996c' -branch_labels = None -depends_on = None - -srid: Final = 4326 - -fire_zone_table = sa.Table('fire_zones', sa.MetaData(), - sa.Column('id', sa.Integer(), nullable=False), - sa.Column('feature_id', sa.Integer(), nullable=False), - sa.Column('geom', geoalchemy2.types.Geometry(geometry_type='MULTIPOLYGON', srid=4326, - spatial_index=False, from_text='ST_GeomFromEWKT', - name='geometry'), nullable=False), - sa.Column('create_date', TZTimeStamp(), nullable=False), - sa.Column('update_date', TZTimeStamp(), nullable=False), - sa.Column('mof_fire_zone_id', sa.Integer(), nullable=True), - sa.Column('mof_fire_zone_name', sa.String(), nullable=True), - sa.Column('mof_fire_centre_name', sa.String(), nullable=True), - sa.Column('headquarters_city_name', sa.String(), nullable=True), - sa.Column('objectid', sa.Integer(), nullable=True), - sa.Column('feature_area_sqm', postgresql.DOUBLE_PRECISION(), nullable=True), - sa.Column('feature_length_m', postgresql.DOUBLE_PRECISION(), nullable=True), - sa.Column('geometry.area', sa.Integer(), nullable=True), - sa.Column('geometry.len', sa.Integer(), nullable=True)) - -fire_zone_labels_table = sa.Table('fire_zones_labels', sa.MetaData(), - sa.Column('id', sa.Integer(), nullable=False), - sa.Column('feature_id', sa.Integer(), nullable=False), - sa.Column('geom', geoalchemy2.types.Geometry(geometry_type='POINT', srid=4326, - spatial_index=False, from_text='ST_GeomFromEWKT', name='geometry'), nullable=False), - sa.Column('create_date', TZTimeStamp(), nullable=False), - sa.Column('update_date', TZTimeStamp(), nullable=False), - sa.Column('mof_fire_zone_id', sa.Integer(), nullable=True), - sa.Column('mof_fire_zone_name', sa.String(), nullable=True), - sa.Column('mof_fire_centre_name', sa.String(), nullable=True), - sa.Column('headquarters_city_name', sa.String(), nullable=True), - sa.Column('objectid', sa.Integer(), nullable=True), - sa.Column('feature_area_sqm', postgresql.DOUBLE_PRECISION(), nullable=True), - sa.Column('feature_length_m', postgresql.DOUBLE_PRECISION(), nullable=True), - sa.Column('geometry.area', sa.Integer(), nullable=True), - sa.Column('geometry.len', sa.Integer(), nullable=True), - sa.PrimaryKeyConstraint('id'), - comment='BC fire zone labels' - ) -fire_centre_table = sa.Table('fire_centres', sa.MetaData(), - sa.Column('id', sa.Integer(), nullable=False), - sa.Column('feature_id', sa.Integer(), nullable=False), - sa.Column('geom', geoalchemy2.types.Geometry(geometry_type='POLYGON', srid=4326, - spatial_index=False, from_text='ST_GeomFromEWKT', name='geometry'), nullable=False), - sa.Column('create_date', TZTimeStamp(), nullable=False), - sa.Column('update_date', TZTimeStamp(), nullable=False), - sa.Column('mof_fire_centre_id', sa.Integer(), nullable=True), - sa.Column('mof_fire_centre_name', sa.String(), nullable=True), - sa.Column('objectid', sa.Integer(), nullable=True), - sa.Column('feature_area_sqm', postgresql.DOUBLE_PRECISION(), nullable=True), - sa.Column('feature_length_m', postgresql.DOUBLE_PRECISION(), nullable=True), - sa.Column('geometry.area', sa.Integer(), nullable=True), - sa.Column('geometry.len', sa.Integer(), nullable=True)) - -fire_centre_labels_table = sa.Table('fire_centres_labels', sa.MetaData(), - sa.Column('id', sa.Integer(), nullable=False), - sa.Column('feature_id', sa.Integer(), nullable=False), - sa.Column('geom', geoalchemy2.types.Geometry(geometry_type='POINT', srid=4326, - spatial_index=False, from_text='ST_GeomFromEWKT', name='geometry'), nullable=False), - sa.Column('create_date', TZTimeStamp(), nullable=False), - sa.Column('update_date', TZTimeStamp(), nullable=False), - sa.Column('mof_fire_centre_id', sa.Integer(), nullable=True), - sa.Column('mof_fire_zone_name', sa.String(), nullable=True), - sa.Column('mof_fire_centre_name', sa.String(), nullable=True), - sa.Column('objectid', sa.Integer(), nullable=True), - sa.Column('feature_area_sqm', postgresql.DOUBLE_PRECISION(), nullable=True), - sa.Column('feature_length_m', postgresql.DOUBLE_PRECISION(), nullable=True), - sa.Column('geometry.area', sa.Integer(), nullable=True), - sa.Column('geometry.len', sa.Integer(), nullable=True)) - - -def fetch_object_ids(url: str): - """ - Fetch object list from a feature layer. - url: layer url to fetch (e.g. https://maps.gov.bc.ca/arcserver/rest/services/whse/bcgw_pub_whse_legal_admin_boundaries/MapServer/2) - """ - print(f'fetching object list for {url}...') - - params = { - 'where': '1=1', - 'geometryType': 'esriGeometryEnvelope', - 'spatialRel': 'esriSpatialRelIntersects', - # 'outSR': '102100', - # 'outFields': '*', - 'returnGeometry': 'false', - 'returnIdsOnly': 'true', - 'f': 'json' - } - - encode_params = urllib.parse.urlencode(params).encode("utf-8") - print(f'{url}/query?{encode_params.decode()}') - with urllib.request.urlopen(f'{url}/query?', encode_params) as response: - json_data = json.loads(response.read()) - return json_data['objectIds'] - - -def fetch_object(object_id: int, url: str): - """ - Fetch a single object from a feature layer. We have to fetch objects one by one, because they - can get pretty big. Big enough, that if you ask for more than one at a time, you're likely to - encounter 500 errors. - object_id: object id to fetch (e.g. 1) - url: layer url to fetch (e.g. https://maps.gov.bc.ca/arcserver/rest/services/whse/bcgw_pub_whse_legal_admin_boundaries/MapServer/2) - """ - print(f'fetching object {object_id}') - - params = { - 'where': f'objectid={object_id}', - 'geometryType': 'esriGeometryEnvelope', - 'spatialRel': 'esriSpatialRelIntersects', - # 'outSR': '102100', - 'outFields': '*', - 'returnGeometry': 'true', - 'returnIdsOnly': 'false', - 'f': 'geojson' - } - - encode_params = urllib.parse.urlencode(params).encode("utf-8") - print(f'{url}/query?{encode_params.decode()}') - with urllib.request.urlopen(f'{url}/query?', encode_params) as response: - json_data = json.loads(response.read()) - return json_data - - -def save_feature(geom_type: str, geom: BaseGeometry, srid: int, feature: dict, - session: Session, table_schema: Table, allow_update: bool = True): - """ Save feature to database. - """ - # If we're expecting multipolygons, we need to convert the polygon to a - # multipolygon. - if geom_type == 'MULTIPOLYGON' and isinstance(geom, Polygon): - geom = MultiPolygon([geom]) - - wkt = wkb.dumps(geom, hex=True, srid=srid) - props = {key.lower(): value for key, - value in feature['properties'].items()} - values = {'feature_id': feature['id'], 'geom': wkt, **props} - - update = False - if allow_update: - rows = session.execute(select(table_schema).where( - table_schema.c.feature_id == feature['id'])) - for row in rows: - if row: - update = True - break - - values['update_date'] = datetime.now(tz=pytz.timezone('America/Vancouver')) - if update: - print('record exists, updating') - session.execute(table_schema.update().where( - table_schema.c.feature_id == feature['id']).values(values)) - else: - print('create new record') - values['create_date'] = values['update_date'] - session.execute(table_schema.insert().values(values)) - - -def save_features_to_table(ids, url, session, geom_type, table_schema, labels_table_schema): - for object_id in ids: - obj = fetch_object(object_id, url) - - for feature in obj['features']: - geom = shape(feature['geometry']) - - save_feature(geom_type, geom, srid, feature, - session, table_schema) - - if isinstance(geom, Polygon): - save_feature('POINT', geom.centroid, srid, - feature, session, labels_table_schema) - elif isinstance(geom, MultiPolygon): - # We can't update the labels for each polygon, we don't have an id - # for it. So we have to drop them all. - session.query(labels_table_schema)\ - .filter(labels_table_schema.c.feature_id == feature['id'])\ - .delete() - for polygon in geom.geoms: - save_feature('POINT', polygon.centroid, srid, - feature, session, labels_table_schema, allow_update=False) - else: - raise Exception(f'unexpected geometry type: {geom}') - - -def upgrade() -> None: - # ### commands auto generated by Alembic ### - - session = Session(bind=op.get_bind()) - # We fetch a list of object id's, fetching the entire layer in one go, will most likely crash - # the server we're talking to. - fire_zone_url: Final = "https://maps.gov.bc.ca/arcserver/rest/services/whse/bcgw_pub_whse_legal_admin_boundaries/MapServer/8" - fire_zone_ids = fetch_object_ids(fire_zone_url) - - fire_centre_url: Final = "https://maps.gov.bc.ca/arcserver/rest/services/whse/bcgw_pub_whse_legal_admin_boundaries/MapServer/2" - fire_centre_ids = fetch_object_ids(fire_centre_url) - - save_features_to_table(fire_zone_ids, fire_zone_url, session, 'MULTIPOLYGON', - fire_zone_table, fire_zone_labels_table) - save_features_to_table(fire_centre_ids, fire_centre_url, session, 'POLYGON', - fire_centre_table, fire_centre_labels_table) - - # ### end Alembic commands ### - - -def downgrade() -> None: - # ### commands auto generated by Alembic ### - - # no-op, we can just update the data - pass - - # ### end Alembic commands ### diff --git a/tileserv/alembic/versions/8dd1ac777de7_indexes_run_date_for_date_run_type_on_.py b/tileserv/alembic/versions/8dd1ac777de7_indexes_run_date_for_date_run_type_on_.py deleted file mode 100644 index cc62116c9b..0000000000 --- a/tileserv/alembic/versions/8dd1ac777de7_indexes_run_date_for_date_run_type_on_.py +++ /dev/null @@ -1,32 +0,0 @@ -"""indexes run_date, for_date, run_type on hfi - -Revision ID: 8dd1ac777de7 -Revises: 8a1117356bfa -Create Date: 2022-12-14 17:17:12.731872 - -""" -from alembic import op -import sqlalchemy as sa - - -# revision identifiers, used by Alembic. -revision = '8dd1ac777de7' -down_revision = '8a1117356bfa' -branch_labels = None -depends_on = None - - -def upgrade() -> None: - # ### commands auto generated by Alembic ### - op.create_index(op.f('ix_hfi_for_date'), 'hfi', ['for_date'], unique=False) - op.create_index(op.f('ix_hfi_run_date'), 'hfi', ['run_date'], unique=False) - op.create_index(op.f('ix_hfi_run_type'), 'hfi', ['run_type'], unique=False) - # ### end Alembic commands ### - - -def downgrade() -> None: - # ### commands auto generated by Alembic ### - op.drop_index(op.f('ix_hfi_run_type'), table_name='hfi') - op.drop_index(op.f('ix_hfi_run_date'), table_name='hfi') - op.drop_index(op.f('ix_hfi_for_date'), table_name='hfi') - # ### end Alembic commands ### diff --git a/tileserv/alembic/versions/950a9e61996c_fire_labels_tables.py b/tileserv/alembic/versions/950a9e61996c_fire_labels_tables.py deleted file mode 100644 index b245023098..0000000000 --- a/tileserv/alembic/versions/950a9e61996c_fire_labels_tables.py +++ /dev/null @@ -1,81 +0,0 @@ -"""Fire Labels tables - -Revision ID: 950a9e61996c -Revises: dbe8db639a6d -Create Date: 2022-11-23 14:40:35.541707 - -""" -from alembic import op -import sqlalchemy as sa -from sqlalchemy.dialects import postgresql -import geoalchemy2 -from models import TZTimeStamp - -# revision identifiers, used by Alembic. -revision = '950a9e61996c' -down_revision = 'dbe8db639a6d' -branch_labels = None -depends_on = None - - -def upgrade() -> None: - # ### commands auto generated by Alembic ### - op.create_table('fire_zones_labels', - sa.Column('id', sa.Integer(), nullable=False), - sa.Column('feature_id', sa.Integer(), nullable=False), - sa.Column('geom', geoalchemy2.types.Geometry(geometry_type='POINT', srid=4326, - spatial_index=False, from_text='ST_GeomFromEWKT', name='geometry'), nullable=False), - sa.Column('create_date', TZTimeStamp(), nullable=False), - sa.Column('update_date', TZTimeStamp(), nullable=False), - sa.Column('mof_fire_zone_id', sa.Integer(), nullable=True), - sa.Column('mof_fire_zone_name', sa.String(), nullable=True), - sa.Column('mof_fire_centre_name', sa.String(), nullable=True), - sa.Column('headquarters_city_name', sa.String(), nullable=True), - sa.Column('objectid', sa.Integer(), nullable=True), - sa.Column('feature_area_sqm', postgresql.DOUBLE_PRECISION(), nullable=True), - sa.Column('feature_length_m', postgresql.DOUBLE_PRECISION(), nullable=True), - sa.Column('geometry.area', sa.Integer(), nullable=True), - sa.Column('geometry.len', sa.Integer(), nullable=True), - sa.PrimaryKeyConstraint('id'), - comment='BC fire zone labels' - ) - op.create_index('idx_fire_zones_labels_geom', 'fire_zones_labels', ['geom'], unique=False, postgresql_using='gist') - op.create_table('fire_zones_labels_ext', - sa.Column('id', sa.Integer(), nullable=False), - sa.Column('geom', geoalchemy2.types.Geometry(geometry_type='POINT', srid=4326, - spatial_index=False, from_text='ST_GeomFromEWKT', name='geometry'), nullable=False), - sa.Column('create_date', TZTimeStamp(), nullable=False), - sa.Column('update_date', TZTimeStamp(), nullable=False), - sa.Column('fire_zone_feature_id', sa.Integer(), nullable=False), - sa.Column('fire_zone_mof_fire_zone_id', sa.Integer(), nullable=True), - sa.Column('fire_zone_mof_fire_zone_name', sa.String(), nullable=True), - sa.Column('fire_zone_headquarters_city_name', sa.String(), nullable=True), - sa.Column('fire_zone_mof_fire_centre_name', sa.String(), nullable=True), - sa.Column('fire_zone_objectid', sa.Integer(), nullable=True), - sa.Column('fire_zone_feature_area_sqm', postgresql.DOUBLE_PRECISION(), nullable=True), - sa.Column('fire_zone_feature_length_m', postgresql.DOUBLE_PRECISION(), nullable=True), - sa.Column('fire_zone_geometry.area', sa.Integer(), nullable=True), - sa.Column('fire_zone_geometry.len', sa.Integer(), nullable=True), - sa.Column('fire_centre_feature_id', sa.Integer(), nullable=False), - sa.Column('fire_centre_mof_fire_centre_id', sa.Integer(), nullable=True), - sa.Column('fire_centre_mof_fire_centre_name', sa.String(), nullable=True), - sa.Column('fire_centre_objectid', sa.Integer(), nullable=True), - sa.Column('fire_centre_feature_area_sqm', postgresql.DOUBLE_PRECISION(), nullable=True), - sa.Column('fire_centre_feature_length_m', postgresql.DOUBLE_PRECISION(), nullable=True), - sa.Column('fire_centre_geometry.area', sa.Integer(), nullable=True), - sa.Column('fire_centre_geometry.len', sa.Integer(), nullable=True), - sa.PrimaryKeyConstraint('id'), - comment='BC fire zone extended labels' - ) - op.create_index('idx_fire_zones_labels_ext_geom', 'fire_zones_labels_ext', - ['geom'], unique=False, postgresql_using='gist') - # ### end Alembic commands ### - - -def downgrade() -> None: - # ### commands auto generated by Alembic ### - op.drop_index('idx_fire_zones_labels_ext_geom', table_name='fire_zones_labels_ext', postgresql_using='gist') - op.drop_table('fire_zones_labels_ext') - op.drop_index('idx_fire_zones_labels_geom', table_name='fire_zones_labels', postgresql_using='gist') - op.drop_table('fire_zones_labels') - # ### end Alembic commands ### diff --git a/tileserv/alembic/versions/c45ca10f2a13_resync_zones.py b/tileserv/alembic/versions/c45ca10f2a13_resync_zones.py deleted file mode 100644 index f38cba2e38..0000000000 --- a/tileserv/alembic/versions/c45ca10f2a13_resync_zones.py +++ /dev/null @@ -1,211 +0,0 @@ -"""resync-zones - -Revision ID: c45ca10f2a13 -Revises: 4e9825746735 -Create Date: 2023-01-30 12:52:06.320707 - -""" -from typing import Final -from alembic import op -import sqlalchemy as sa -from sqlalchemy import Table -from sqlalchemy.orm.session import Session -from sqlalchemy.sql import select -from sqlalchemy.dialects import postgresql -import geoalchemy2 -import urllib.parse -import urllib.request -import json -from shapely.geometry import shape -from shapely.geometry.multipolygon import MultiPolygon -from shapely.geometry.polygon import Polygon -from shapely.geometry.base import BaseGeometry -from shapely import wkb -import pytz -from datetime import datetime -from models import TZTimeStamp - - -# revision identifiers, used by Alembic. -revision = 'c45ca10f2a13' -down_revision = '4e9825746735' -branch_labels = None -depends_on = None - - -srid: Final = 4326 - -fire_zone_table = sa.Table('fire_zones', sa.MetaData(), - sa.Column('id', sa.Integer(), nullable=False), - sa.Column('feature_id', sa.Integer(), nullable=False), - sa.Column('geom', geoalchemy2.types.Geometry(geometry_type='MULTIPOLYGON', srid=4326, - spatial_index=False, from_text='ST_GeomFromEWKT', - name='geometry'), nullable=False), - sa.Column('create_date', TZTimeStamp(), nullable=False), - sa.Column('update_date', TZTimeStamp(), nullable=False), - sa.Column('mof_fire_zone_id', sa.Integer(), nullable=True), - sa.Column('mof_fire_zone_name', sa.String(), nullable=True), - sa.Column('mof_fire_centre_name', sa.String(), nullable=True), - sa.Column('headquarters_city_name', sa.String(), nullable=True), - sa.Column('objectid', sa.Integer(), nullable=True), - sa.Column('feature_area_sqm', postgresql.DOUBLE_PRECISION(), nullable=True), - sa.Column('feature_length_m', postgresql.DOUBLE_PRECISION(), nullable=True), - sa.Column('geometry.area', sa.Integer(), nullable=True), - sa.Column('geometry.len', sa.Integer(), nullable=True)) - -fire_zone_labels_table = sa.Table('fire_zones_labels', sa.MetaData(), - sa.Column('id', sa.Integer(), nullable=False), - sa.Column('feature_id', sa.Integer(), nullable=False), - sa.Column('geom', geoalchemy2.types.Geometry(geometry_type='POINT', srid=4326, - spatial_index=False, from_text='ST_GeomFromEWKT', name='geometry'), nullable=False), - sa.Column('create_date', TZTimeStamp(), nullable=False), - sa.Column('update_date', TZTimeStamp(), nullable=False), - sa.Column('mof_fire_zone_id', sa.Integer(), nullable=True), - sa.Column('mof_fire_zone_name', sa.String(), nullable=True), - sa.Column('mof_fire_centre_name', sa.String(), nullable=True), - sa.Column('headquarters_city_name', sa.String(), nullable=True), - sa.Column('objectid', sa.Integer(), nullable=True), - sa.Column('feature_area_sqm', postgresql.DOUBLE_PRECISION(), nullable=True), - sa.Column('feature_length_m', postgresql.DOUBLE_PRECISION(), nullable=True), - sa.Column('geometry.area', sa.Integer(), nullable=True), - sa.Column('geometry.len', sa.Integer(), nullable=True), - sa.PrimaryKeyConstraint('id'), - comment='BC fire zone labels' - ) - - -def fetch_object_ids(url: str): - """ - Fetch object list from a feature layer. - url: layer url to fetch (e.g. https://maps.gov.bc.ca/arcserver/rest/services/whse/bcgw_pub_whse_legal_admin_boundaries/MapServer/2) - """ - print(f'fetching object list for {url}...') - - params = { - 'where': '1=1', - 'geometryType': 'esriGeometryEnvelope', - 'spatialRel': 'esriSpatialRelIntersects', - # 'outSR': '102100', - # 'outFields': '*', - 'returnGeometry': 'false', - 'returnIdsOnly': 'true', - 'f': 'json' - } - - encode_params = urllib.parse.urlencode(params).encode("utf-8") - print(f'{url}/query?{encode_params.decode()}') - with urllib.request.urlopen(f'{url}/query?', encode_params) as response: - json_data = json.loads(response.read()) - return json_data['objectIds'] - - -def fetch_object(object_id: int, url: str): - """ - Fetch a single object from a feature layer. We have to fetch objects one by one, because they - can get pretty big. Big enough, that if you ask for more than one at a time, you're likely to - encounter 500 errors. - object_id: object id to fetch (e.g. 1) - url: layer url to fetch (e.g. https://maps.gov.bc.ca/arcserver/rest/services/whse/bcgw_pub_whse_legal_admin_boundaries/MapServer/2) - """ - print(f'fetching object {object_id}') - - params = { - 'where': f'objectid={object_id}', - 'geometryType': 'esriGeometryEnvelope', - 'spatialRel': 'esriSpatialRelIntersects', - # 'outSR': '102100', - 'outFields': '*', - 'returnGeometry': 'true', - 'returnIdsOnly': 'false', - 'f': 'geojson' - } - - encode_params = urllib.parse.urlencode(params).encode("utf-8") - print(f'{url}/query?{encode_params.decode()}') - with urllib.request.urlopen(f'{url}/query?', encode_params) as response: - json_data = json.loads(response.read()) - return json_data - - -def save_feature(geom_type: str, geom: BaseGeometry, srid: int, feature: dict, - session: Session, table_schema: Table, allow_update: bool = True): - """ Save feature to database. - """ - # If we're expecting multipolygons, we need to convert the polygon to a - # multipolygon. - if geom_type == 'MULTIPOLYGON' and isinstance(geom, Polygon): - geom = MultiPolygon([geom]) - - wkt = wkb.dumps(geom, hex=True, srid=srid) - props = {key.lower(): value for key, - value in feature['properties'].items()} - values = {'feature_id': feature['id'], 'geom': wkt, **props} - - update = False - if allow_update: - rows = session.execute(select(table_schema).where( - table_schema.c.feature_id == feature['id'])) - for row in rows: - if row: - update = True - break - - values['update_date'] = datetime.now(tz=pytz.timezone('America/Vancouver')) - if update: - print('record exists, updating') - session.execute(table_schema.update().where( - table_schema.c.feature_id == feature['id']).values(values)) - else: - print('create new record') - values['create_date'] = values['update_date'] - session.execute(table_schema.insert().values(values)) - - -def save_features_to_table(ids, url, session, geom_type, table_schema, labels_table_schema): - for object_id in ids: - obj = fetch_object(object_id, url) - - for feature in obj['features']: - geom = shape(feature['geometry']) - - save_feature(geom_type, geom, srid, feature, - session, table_schema) - - if isinstance(geom, Polygon): - save_feature('POINT', geom.centroid, srid, - feature, session, labels_table_schema) - elif isinstance(geom, MultiPolygon): - # We can't update the labels for each polygon, we don't have an id - # for it. So we have to drop them all. - session.query(labels_table_schema)\ - .filter(labels_table_schema.c.feature_id == feature['id'])\ - .delete() - for polygon in geom.geoms: - save_feature('POINT', polygon.centroid, srid, - feature, session, labels_table_schema, allow_update=False) - else: - raise Exception(f'unexpected geometry type: {geom}') - - -def upgrade() -> None: - # ### commands auto generated by Alembic ### - - session = Session(bind=op.get_bind()) - # We fetch a list of object id's, fetching the entire layer in one go, will most likely crash - # the server we're talking to. - fire_zone_url: Final = "https://maps.gov.bc.ca/arcserver/rest/services/whse/bcgw_pub_whse_legal_admin_boundaries/MapServer/8" - fire_zone_ids = fetch_object_ids(fire_zone_url) - - save_features_to_table(fire_zone_ids, fire_zone_url, session, 'MULTIPOLYGON', - fire_zone_table, fire_zone_labels_table) - - # ### end Alembic commands ### - - -def downgrade() -> None: - # ### commands auto generated by Alembic ### - - # no-op, we can just update the data - pass - - # ### end Alembic commands ### diff --git a/tileserv/alembic/versions/c6e39ac9dc29_resync_zones_for_new_ids.py b/tileserv/alembic/versions/c6e39ac9dc29_resync_zones_for_new_ids.py deleted file mode 100644 index 8ba07dcb1c..0000000000 --- a/tileserv/alembic/versions/c6e39ac9dc29_resync_zones_for_new_ids.py +++ /dev/null @@ -1,210 +0,0 @@ -"""resync zones for new ids - -Revision ID: c6e39ac9dc29 -Revises: 8dd1ac777de7 -Create Date: 2023-01-27 15:13:52.899555 - -""" -from typing import Final -from alembic import op -import sqlalchemy as sa -from sqlalchemy import Table -from sqlalchemy.orm.session import Session -from sqlalchemy.sql import select -from sqlalchemy.dialects import postgresql -import geoalchemy2 -import urllib.parse -import urllib.request -import json -from shapely.geometry import shape -from shapely.geometry.multipolygon import MultiPolygon -from shapely.geometry.polygon import Polygon -from shapely.geometry.base import BaseGeometry -from shapely import wkb -import pytz -from datetime import datetime -from models import TZTimeStamp - - -# revision identifiers, used by Alembic. -revision = 'c6e39ac9dc29' -down_revision = '8dd1ac777de7' -branch_labels = None -depends_on = None - -srid: Final = 4326 - -fire_zone_table = sa.Table('fire_zones', sa.MetaData(), - sa.Column('id', sa.Integer(), nullable=False), - sa.Column('feature_id', sa.Integer(), nullable=False), - sa.Column('geom', geoalchemy2.types.Geometry(geometry_type='MULTIPOLYGON', srid=4326, - spatial_index=False, from_text='ST_GeomFromEWKT', - name='geometry'), nullable=False), - sa.Column('create_date', TZTimeStamp(), nullable=False), - sa.Column('update_date', TZTimeStamp(), nullable=False), - sa.Column('mof_fire_zone_id', sa.Integer(), nullable=True), - sa.Column('mof_fire_zone_name', sa.String(), nullable=True), - sa.Column('mof_fire_centre_name', sa.String(), nullable=True), - sa.Column('headquarters_city_name', sa.String(), nullable=True), - sa.Column('objectid', sa.Integer(), nullable=True), - sa.Column('feature_area_sqm', postgresql.DOUBLE_PRECISION(), nullable=True), - sa.Column('feature_length_m', postgresql.DOUBLE_PRECISION(), nullable=True), - sa.Column('geometry.area', sa.Integer(), nullable=True), - sa.Column('geometry.len', sa.Integer(), nullable=True)) - -fire_zone_labels_table = sa.Table('fire_zones_labels', sa.MetaData(), - sa.Column('id', sa.Integer(), nullable=False), - sa.Column('feature_id', sa.Integer(), nullable=False), - sa.Column('geom', geoalchemy2.types.Geometry(geometry_type='POINT', srid=4326, - spatial_index=False, from_text='ST_GeomFromEWKT', name='geometry'), nullable=False), - sa.Column('create_date', TZTimeStamp(), nullable=False), - sa.Column('update_date', TZTimeStamp(), nullable=False), - sa.Column('mof_fire_zone_id', sa.Integer(), nullable=True), - sa.Column('mof_fire_zone_name', sa.String(), nullable=True), - sa.Column('mof_fire_centre_name', sa.String(), nullable=True), - sa.Column('headquarters_city_name', sa.String(), nullable=True), - sa.Column('objectid', sa.Integer(), nullable=True), - sa.Column('feature_area_sqm', postgresql.DOUBLE_PRECISION(), nullable=True), - sa.Column('feature_length_m', postgresql.DOUBLE_PRECISION(), nullable=True), - sa.Column('geometry.area', sa.Integer(), nullable=True), - sa.Column('geometry.len', sa.Integer(), nullable=True), - sa.PrimaryKeyConstraint('id'), - comment='BC fire zone labels' - ) - - -def fetch_object_ids(url: str): - """ - Fetch object list from a feature layer. - url: layer url to fetch (e.g. https://maps.gov.bc.ca/arcserver/rest/services/whse/bcgw_pub_whse_legal_admin_boundaries/MapServer/2) - """ - print(f'fetching object list for {url}...') - - params = { - 'where': '1=1', - 'geometryType': 'esriGeometryEnvelope', - 'spatialRel': 'esriSpatialRelIntersects', - # 'outSR': '102100', - # 'outFields': '*', - 'returnGeometry': 'false', - 'returnIdsOnly': 'true', - 'f': 'json' - } - - encode_params = urllib.parse.urlencode(params).encode("utf-8") - print(f'{url}/query?{encode_params.decode()}') - with urllib.request.urlopen(f'{url}/query?', encode_params) as response: - json_data = json.loads(response.read()) - return json_data['objectIds'] - - -def fetch_object(object_id: int, url: str): - """ - Fetch a single object from a feature layer. We have to fetch objects one by one, because they - can get pretty big. Big enough, that if you ask for more than one at a time, you're likely to - encounter 500 errors. - object_id: object id to fetch (e.g. 1) - url: layer url to fetch (e.g. https://maps.gov.bc.ca/arcserver/rest/services/whse/bcgw_pub_whse_legal_admin_boundaries/MapServer/2) - """ - print(f'fetching object {object_id}') - - params = { - 'where': f'objectid={object_id}', - 'geometryType': 'esriGeometryEnvelope', - 'spatialRel': 'esriSpatialRelIntersects', - # 'outSR': '102100', - 'outFields': '*', - 'returnGeometry': 'true', - 'returnIdsOnly': 'false', - 'f': 'geojson' - } - - encode_params = urllib.parse.urlencode(params).encode("utf-8") - print(f'{url}/query?{encode_params.decode()}') - with urllib.request.urlopen(f'{url}/query?', encode_params) as response: - json_data = json.loads(response.read()) - return json_data - - -def save_feature(geom_type: str, geom: BaseGeometry, srid: int, feature: dict, - session: Session, table_schema: Table, allow_update: bool = True): - """ Save feature to database. - """ - # If we're expecting multipolygons, we need to convert the polygon to a - # multipolygon. - if geom_type == 'MULTIPOLYGON' and isinstance(geom, Polygon): - geom = MultiPolygon([geom]) - - wkt = wkb.dumps(geom, hex=True, srid=srid) - props = {key.lower(): value for key, - value in feature['properties'].items()} - values = {'feature_id': feature['id'], 'geom': wkt, **props} - - update = False - if allow_update: - rows = session.execute(select(table_schema).where( - table_schema.c.feature_id == feature['id'])) - for row in rows: - if row: - update = True - break - - values['update_date'] = datetime.now(tz=pytz.timezone('America/Vancouver')) - if update: - print('record exists, updating') - session.execute(table_schema.update().where( - table_schema.c.feature_id == feature['id']).values(values)) - else: - print('create new record') - values['create_date'] = values['update_date'] - session.execute(table_schema.insert().values(values)) - - -def save_features_to_table(ids, url, session, geom_type, table_schema, labels_table_schema): - for object_id in ids: - obj = fetch_object(object_id, url) - - for feature in obj['features']: - geom = shape(feature['geometry']) - - save_feature(geom_type, geom, srid, feature, - session, table_schema) - - if isinstance(geom, Polygon): - save_feature('POINT', geom.centroid, srid, - feature, session, labels_table_schema) - elif isinstance(geom, MultiPolygon): - # We can't update the labels for each polygon, we don't have an id - # for it. So we have to drop them all. - session.query(labels_table_schema)\ - .filter(labels_table_schema.c.feature_id == feature['id'])\ - .delete() - for polygon in geom.geoms: - save_feature('POINT', polygon.centroid, srid, - feature, session, labels_table_schema, allow_update=False) - else: - raise Exception(f'unexpected geometry type: {geom}') - - -def upgrade() -> None: - # ### commands auto generated by Alembic ### - - session = Session(bind=op.get_bind()) - # We fetch a list of object id's, fetching the entire layer in one go, will most likely crash - # the server we're talking to. - fire_zone_url: Final = "https://maps.gov.bc.ca/arcserver/rest/services/whse/bcgw_pub_whse_legal_admin_boundaries/MapServer/8" - fire_zone_ids = fetch_object_ids(fire_zone_url) - - save_features_to_table(fire_zone_ids, fire_zone_url, session, 'MULTIPOLYGON', - fire_zone_table, fire_zone_labels_table) - - # ### end Alembic commands ### - - -def downgrade() -> None: - # ### commands auto generated by Alembic ### - - # no-op, we can just update the data - pass - - # ### end Alembic commands ### diff --git a/tileserv/alembic/versions/d7a9b15ae82f_firecentre_table.py b/tileserv/alembic/versions/d7a9b15ae82f_firecentre_table.py deleted file mode 100644 index 9cdd34642d..0000000000 --- a/tileserv/alembic/versions/d7a9b15ae82f_firecentre_table.py +++ /dev/null @@ -1,48 +0,0 @@ -"""FireCentre table - -Revision ID: d7a9b15ae82f -Revises: 1c0954110d4e -Create Date: 2022-11-23 14:16:47.633198 - -""" -from alembic import op -import sqlalchemy as sa -from sqlalchemy.dialects import postgresql -import geoalchemy2 -from models import TZTimeStamp - -# revision identifiers, used by Alembic. -revision = 'd7a9b15ae82f' -down_revision = '1c0954110d4e' -branch_labels = None -depends_on = None - - -def upgrade() -> None: - # ### commands auto generated by Alembic ### - op.create_table('fire_centres', - sa.Column('id', sa.Integer(), nullable=False), - sa.Column('feature_id', sa.Integer(), nullable=False), - sa.Column('geom', geoalchemy2.types.Geometry(geometry_type='POLYGON', srid=4326, - spatial_index=False, from_text='ST_GeomFromEWKT', name='geometry'), nullable=False), - sa.Column('create_date', TZTimeStamp(), nullable=False), - sa.Column('update_date', TZTimeStamp(), nullable=False), - sa.Column('mof_fire_centre_id', sa.Integer(), nullable=True), - sa.Column('mof_fire_centre_name', sa.String(), nullable=True), - sa.Column('objectid', sa.Integer(), nullable=True), - sa.Column('feature_area_sqm', postgresql.DOUBLE_PRECISION(), nullable=True), - sa.Column('feature_length_m', postgresql.DOUBLE_PRECISION(), nullable=True), - sa.Column('geometry.area', sa.Integer(), nullable=True), - sa.Column('geometry.len', sa.Integer(), nullable=True), - sa.PrimaryKeyConstraint('id'), - comment='BC fire centre boundaries' - ) - op.create_index('idx_fire_centres_geom', 'fire_centres', ['geom'], unique=False, postgresql_using='gist') - # ### end Alembic commands ### - - -def downgrade() -> None: - # ### commands auto generated by Alembic ### - op.drop_index('idx_fire_centres_geom', table_name='fire_centres', postgresql_using='gist') - op.drop_table('fire_centres') - # ### end Alembic commands ### diff --git a/tileserv/alembic/versions/dbe8db639a6d_firecentrelabels_table.py b/tileserv/alembic/versions/dbe8db639a6d_firecentrelabels_table.py deleted file mode 100644 index ed267fe2be..0000000000 --- a/tileserv/alembic/versions/dbe8db639a6d_firecentrelabels_table.py +++ /dev/null @@ -1,50 +0,0 @@ -"""FireCentreLabels table - -Revision ID: dbe8db639a6d -Revises: 3893bbb60779 -Create Date: 2022-11-23 14:25:15.901892 - -""" -from alembic import op -import sqlalchemy as sa -from sqlalchemy.dialects import postgresql -import geoalchemy2 -from models import TZTimeStamp - -# revision identifiers, used by Alembic. -revision = 'dbe8db639a6d' -down_revision = '3893bbb60779' -branch_labels = None -depends_on = None - - -def upgrade() -> None: - # ### commands auto generated by Alembic ### - op.create_table('fire_centres_labels', - sa.Column('id', sa.Integer(), nullable=False), - sa.Column('feature_id', sa.Integer(), nullable=False), - sa.Column('geom', geoalchemy2.types.Geometry(geometry_type='POINT', srid=4326, - spatial_index=False, from_text='ST_GeomFromEWKT', name='geometry'), nullable=False), - sa.Column('create_date', TZTimeStamp(), nullable=False), - sa.Column('update_date', TZTimeStamp(), nullable=False), - sa.Column('mof_fire_centre_id', sa.Integer(), nullable=True), - sa.Column('mof_fire_zone_name', sa.String(), nullable=True), - sa.Column('mof_fire_centre_name', sa.String(), nullable=True), - sa.Column('objectid', sa.Integer(), nullable=True), - sa.Column('feature_area_sqm', postgresql.DOUBLE_PRECISION(), nullable=True), - sa.Column('feature_length_m', postgresql.DOUBLE_PRECISION(), nullable=True), - sa.Column('geometry.area', sa.Integer(), nullable=True), - sa.Column('geometry.len', sa.Integer(), nullable=True), - sa.PrimaryKeyConstraint('id'), - comment='BC fire centre labels' - ) - op.create_index('idx_fire_centres_labels_geom', 'fire_centres_labels', - ['geom'], unique=False, postgresql_using='gist') - # ### end Alembic commands ### - - -def downgrade() -> None: - # ### commands auto generated by Alembic ### - op.drop_index('idx_fire_centres_labels_geom', table_name='fire_centres_labels', postgresql_using='gist') - op.drop_table('fire_centres_labels') - # ### end Alembic commands ### diff --git a/tileserv/alembic/versions/fdb4438ff783_initial_migration_add_postgis.py b/tileserv/alembic/versions/fdb4438ff783_initial_migration_add_postgis.py deleted file mode 100644 index 5e9a8d2222..0000000000 --- a/tileserv/alembic/versions/fdb4438ff783_initial_migration_add_postgis.py +++ /dev/null @@ -1,32 +0,0 @@ -"""Initial migration, add postgis - -Revision ID: fdb4438ff783 -Revises: -Create Date: 2022-11-22 15:38:43.218787 - -""" -from alembic import op - - -# revision identifiers, used by Alembic. -revision = 'fdb4438ff783' -down_revision = None -branch_labels = None -depends_on = None - - -def upgrade() -> None: - # ### commands auto generated by Alembic ### - op.execute( - 'create extension IF NOT EXISTS postgis' - ) - - # ### end Alembic commands ### - - -def downgrade() -> None: - # ### commands auto generated by Alembic ### - op.execute( - 'drop extension IF EXISTS postgis' - ) - # ### end Alembic commands ### diff --git a/tileserv/db.py b/tileserv/db.py deleted file mode 100644 index 3500b626eb..0000000000 --- a/tileserv/db.py +++ /dev/null @@ -1,12 +0,0 @@ -""" Setup database to perform CRUD transactions -""" -import config - -write_user = config.get('TILESERV_DB_WRITE_USER', 'tileserv') -postgres_password = config.get('TILESERV_DB_PASSWORD', 'tileserv') -postgres_write_host = config.get('TILESERV_WRITE_HOST', 'host.docker.internal') -postgres_port = config.get('TILESERV_DB_PORT', '5432') -postgres_database = config.get('TILESERV_DB', 'tileserv') -postgres_url = config.get('DATABASE_URL') - -DATABASE_URL = postgres_url diff --git a/tileserv/models/__init__.py b/tileserv/models/__init__.py deleted file mode 100644 index 591fde3b40..0000000000 --- a/tileserv/models/__init__.py +++ /dev/null @@ -1,220 +0,0 @@ -""" Class model that reflect resources and map to database tables relating audits created -by authenticated user requests. -""" -import enum -import logging -from datetime import datetime -from sqlalchemy.types import TypeDecorator -from sqlalchemy import (Column, Enum, Index, Integer, String, TIMESTAMP) -from sqlalchemy.dialects.postgresql import DOUBLE_PRECISION -from sqlalchemy.ext.declarative import declarative_base -import geoalchemy2 - -# constructing a base class for declarative class definitions -Base = declarative_base() - -""" Types etc. common to models -""" - -logger = logging.getLogger(__name__) - - -class TZTimeStamp(TypeDecorator): - """ TimeStamp type that ensures that timezones are always specified. - If the timezone isn't specified, you aren't guaranteed that you're going to get consistent times. """ - impl = TIMESTAMP(timezone=True) - cache_ok = True - - def process_bind_param(self, value, dialect): - if isinstance(value, datetime) and value.tzinfo is None: - logger.warning('type:%s tzinfo:%s', type(value), value.tzinfo) - raise ValueError('{!r} must be TZ-aware'.format(value)) - return value - - def __repr__(self): - return 'TZTimeStamp()' - - -class RunType(enum.Enum): - FORECAST = 'forecast' - ACTUAL = 'actual' - - -class HFI(Base): - """ Class representing table structure of processed HFI by - run date and time - """ - __tablename__ = 'hfi' - __table_args__ = ( - {'comment': 'Processed HFI by run date and time'} - ) - id = Column(Integer, primary_key=True) - hfi = Column(String, nullable=True, index=True) - geom = Column(geoalchemy2.types.Geometry(geometry_type='MULTIPOLYGON', - srid=3005, - spatial_index=False, from_text='ST_GeomFromEWKT', name='geometry'), nullable=False) - run_date = Column(TZTimeStamp, nullable=False, index=True) - for_date = Column(TZTimeStamp, nullable=False, index=True) - run_type = Column(Enum(RunType), nullable=False, index=True) - - -# Explict creation of index due to issue with alembic + geoalchemy. -Index('idx_hfi_geom', - HFI.geom, postgresql_using='gist') -# Explict creation of index for multi index -Index('sfms_run_multiindex', HFI.run_date, HFI.for_date, HFI.run_type) - - -class FireCentre(Base): - """ Class representing table structure of a fire centre - """ - __tablename__ = 'fire_centres' - __table_args__ = ( - {'comment': 'BC fire centre boundaries'} - ) - id = Column(Integer, primary_key=True) - feature_id = Column(Integer, nullable=False) - geom = Column(geoalchemy2.types.Geometry(geometry_type='Polygon', - srid=4326, - spatial_index=False, from_text='ST_GeomFromEWKT', name='geometry'), nullable=False) - create_date = Column(TZTimeStamp, nullable=False) - update_date = Column(TZTimeStamp, nullable=False) - mof_fire_centre_id = Column(Integer) - mof_fire_centre_name = Column(String) - objectid = Column(Integer) - feature_area_sqm = Column(DOUBLE_PRECISION) - feature_length_m = Column(DOUBLE_PRECISION) - geometry_area = Column(Integer, name="geometry.area") - geometry_len = Column(Integer, name="geometry.len") - - -# Explict creation of index due to issue with alembic + geoalchemy. -Index('idx_fire_centres_geom', - FireCentre.geom, postgresql_using='gist') - - -class FireCentreLabel(Base): - """ Class representing table structure of a fire centre label - """ - __tablename__ = 'fire_centres_labels' - __table_args__ = ( - {'comment': 'BC fire centre labels'} - ) - id = Column(Integer, primary_key=True) - feature_id = Column(Integer, nullable=False) - geom = Column(geoalchemy2.types.Geometry(geometry_type='Point', - srid=4326, - spatial_index=False, from_text='ST_GeomFromEWKT', name='geometry'), nullable=False) - create_date = Column(TZTimeStamp, nullable=False) - update_date = Column(TZTimeStamp, nullable=False) - mof_fire_centre_id = Column(Integer) - mof_fire_zone_name = Column(String) - mof_fire_centre_name = Column(String) - objectid = Column(Integer) - feature_area_sqm = Column(DOUBLE_PRECISION) - feature_length_m = Column(DOUBLE_PRECISION) - geometry_area = Column(Integer, name="geometry.area") - geometry_len = Column(Integer, name="geometry.len") - - -# Explict creation of index due to issue with alembic + geoalchemy. -Index('idx_fire_centres_labels_geom', - FireCentreLabel.geom, postgresql_using='gist') - - -class FireZone(Base): - """ Class representing table structure of a fire zone - """ - __tablename__ = 'fire_zones' - __table_args__ = ( - {'comment': 'BC fire zone boundaries'} - ) - id = Column(Integer, primary_key=True) - feature_id = Column(Integer, nullable=False) - geom = Column(geoalchemy2.types.Geometry(geometry_type='MultiPolygon', - srid=4326, - spatial_index=False, from_text='ST_GeomFromEWKT', name='geometry'), nullable=False) - create_date = Column(TZTimeStamp, nullable=False) - update_date = Column(TZTimeStamp, nullable=False) - mof_fire_zone_id = Column(Integer) - mof_fire_zone_name = Column(String) - mof_fire_centre_name = Column(String) - headquarters_city_name = Column(String) - objectid = Column(Integer) - feature_area_sqm = Column(DOUBLE_PRECISION) - feature_length_m = Column(DOUBLE_PRECISION) - geometry_area = Column(Integer, name="geometry.area") - geometry_len = Column(Integer, name="geometry.len") - - -# Explict creation of index due to issue with alembic + geoalchemy. -Index('idx_fire_zones_geom', - FireZone.geom, postgresql_using='gist') - - -class FireZoneLabel(Base): - """ Class representing table structure of a fire zone label - """ - __tablename__ = 'fire_zones_labels' - __table_args__ = ( - {'comment': 'BC fire zone labels'} - ) - id = Column(Integer, primary_key=True) - feature_id = Column(Integer, nullable=False) - geom = Column(geoalchemy2.types.Geometry(geometry_type='Point', - srid=4326, - spatial_index=False, from_text='ST_GeomFromEWKT', name='geometry'), nullable=False) - create_date = Column(TZTimeStamp, nullable=False) - update_date = Column(TZTimeStamp, nullable=False) - mof_fire_zone_id = Column(Integer) - mof_fire_zone_name = Column(String) - mof_fire_centre_name = Column(String) - headquarters_city_name = Column(String) - objectid = Column(Integer) - feature_area_sqm = Column(DOUBLE_PRECISION) - feature_length_m = Column(DOUBLE_PRECISION) - geometry_area = Column(Integer, name="geometry.area") - geometry_len = Column(Integer, name="geometry.len") - - -# Explict creation of index due to issue with alembic + geoalchemy. -Index('idx_fire_zones_labels_geom', - FireZoneLabel.geom, postgresql_using='gist') - - -class FireZoneLabelExt(Base): - """ Class representing table structure of a fire zone extended label - """ - __tablename__ = 'fire_zones_labels_ext' - __table_args__ = ( - {'comment': 'BC fire zone extended labels'} - ) - id = Column(Integer, primary_key=True) - geom = Column(geoalchemy2.types.Geometry(geometry_type='Point', - srid=4326, - spatial_index=False, from_text='ST_GeomFromEWKT', name='geometry'), nullable=False) - create_date = Column(TZTimeStamp, nullable=False) - update_date = Column(TZTimeStamp, nullable=False) - fire_zone_feature_id = Column(Integer, nullable=False) - fire_zone_mof_fire_zone_id = Column(Integer) - fire_zone_mof_fire_zone_name = Column(String) - fire_zone_headquarters_city_name = Column(String) - fire_zone_mof_fire_centre_name = Column(String) - fire_zone_objectid = Column(Integer) - fire_zone_feature_area_sqm = Column(DOUBLE_PRECISION) - fire_zone_feature_length_m = Column(DOUBLE_PRECISION) - fire_zone_geometry_area = Column(Integer, name="fire_zone_geometry.area") - fire_zone_geometry_len = Column(Integer, name="fire_zone_geometry.len") - fire_centre_feature_id = Column(Integer, nullable=False) - fire_centre_mof_fire_centre_id = Column(Integer) - fire_centre_mof_fire_centre_name = Column(String) - fire_centre_objectid = Column(Integer) - fire_centre_feature_area_sqm = Column(DOUBLE_PRECISION) - fire_centre_feature_length_m = Column(DOUBLE_PRECISION) - fire_centre_geometry_area = Column(Integer, name="fire_centre_geometry.area") - fire_centre_geometry_len = Column(Integer, name="fire_centre_geometry.len") - 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d2d2382649..0000000000 --- a/tileserv/pyproject.toml +++ /dev/null @@ -1,26 +0,0 @@ -[tool.poetry] -name = "tileserv" -version = "0.1.0" -description = "pg_tileserv database migrations" -authors = ["Conor Brady "] -readme = "README.md" -package-mode = false - -[tool.poetry.dependencies] -python = "^3.10" -sqlalchemy = "^1.4.44" -alembic = "^1.8.1" -psycopg2-binary = "^2.9.5" -python-decouple = "^3.6" -geoalchemy2 = "^0.15.0" -pytz = "^2022.6" -pytest = "^9.0.0" -aiobotocore = "^2.4.1" -types-aiobotocore = { extras = ["s3"], version = "^2.4.1" } -pandas = "^1.5.2" -requests = "^2.31.0" - - -[build-system] -requires = ["poetry-core"] -build-backend = "poetry.core.masonry.api" diff --git a/tileserv/start.sh b/tileserv/start.sh deleted file mode 100755 index 8ce1475958..0000000000 --- a/tileserv/start.sh +++ /dev/null @@ -1,6 +0,0 @@ -#!/usr/bin/env bash -set -e -export DATABASE_URL="${DATABASE_URL}" - -# Run migrations -PYTHONPATH=. poetry run alembic upgrade head \ No newline at end of file diff --git a/tileserv/tests/tools/test_s3.py b/tileserv/tests/tools/test_s3.py deleted file mode 100644 index 59128f5e91..0000000000 --- a/tileserv/tests/tools/test_s3.py +++ /dev/null @@ -1,61 +0,0 @@ -from dateutil.tz import tzutc -import datetime - -from tileserv.tools.s3 import get_hfi_objects - -utc = tzutc() - -test_objects = [ - {'Key': 'sfms/uploads/forecast/2022-09-03/hfi20220903.tif', 'LastModified': datetime.datetime( - 2022, 9, 7, 18, 6, 26, 556000, tzinfo=utc)}, - {'Key': 'sfms/uploads/forecast/2022-09-03/hfi20220904.tif', 'LastModified': datetime.datetime( - 2022, 9, 7, 18, 6, 26, 695000, tzinfo=utc)}, - {'Key': 'sfms/uploads/forecast/2022-09-03/hfi20220905.tif', 'LastModified': datetime.datetime( - 2022, 9, 7, 18, 6, 27, 33000, tzinfo=utc)}, - {'Key': 'sfms/uploads/forecast/2022-09-03/hfi20220906.tif', 'LastModified': datetime.datetime( - 2022, 9, 7, 18, 6, 27, 513000, tzinfo=utc)}, -] - - -def test_get_objects_only_hfi(): - objects = [ - {'Key': 'sfms/uploads/forecast/2022-09-03/bui20220903.tif', 'LastModified': datetime.datetime( - 2022, 9, 7, 18, 6, 26, 556000, tzinfo=utc)}, - {'Key': 'sfms/uploads/forecast/2022-09-03/hfi20220904.tif', 'LastModified': datetime.datetime( - 2022, 9, 7, 18, 6, 26, 695000, tzinfo=utc)} - ] - res = get_hfi_objects(objects) - assert res[0] == objects[1] - - -def test_get_objects_all_hfi(): - objects = [ - {'Key': 'sfms/uploads/forecast/2022-09-03/hfi20220903.tif', 'LastModified': datetime.datetime( - 2022, 9, 7, 18, 6, 26, 556000, tzinfo=utc)}, - {'Key': 'sfms/uploads/forecast/2022-09-03/hfi20220904.tif', 'LastModified': datetime.datetime( - 2022, 9, 7, 18, 6, 26, 695000, tzinfo=utc)} - ] - res = get_hfi_objects(objects) - assert res == objects - - -def test_get_objects_tif_or_tiff(): - objects = [ - {'Key': 'sfms/uploads/forecast/2022-09-03/hfi20220903.tiff', 'LastModified': datetime.datetime( - 2022, 9, 7, 18, 6, 26, 556000, tzinfo=utc)}, - {'Key': 'sfms/uploads/forecast/2022-09-03/hfi20220904.tif', 'LastModified': datetime.datetime( - 2022, 9, 7, 18, 6, 26, 695000, tzinfo=utc)} - ] - res = get_hfi_objects(objects) - assert res == objects - - -def test_get_objects_ignore_non_tiff(): - objects = [ - {'Key': 'sfms/uploads/forecast/2022-09-03/hfi20220903.docx', 'LastModified': datetime.datetime( - 2022, 9, 7, 18, 6, 26, 556000, tzinfo=utc)}, - {'Key': 'sfms/uploads/forecast/2022-09-03/hfi20220904.docx', 'LastModified': datetime.datetime( - 2022, 9, 7, 18, 6, 26, 695000, tzinfo=utc)} - ] - res = get_hfi_objects(objects) - assert res == [] diff --git a/tileserv/tools/.env.example b/tileserv/tools/.env.example deleted file mode 100644 index 63833631ac..0000000000 --- a/tileserv/tools/.env.example +++ /dev/null @@ -1,4 +0,0 @@ -OBJECT_STORE_SECRET=localhost -OBJECT_STORE_USER_ID= -OBJECT_STORE_SERVER= -OBJECT_STORE_BUCKET= \ No newline at end of file diff --git a/wps_jobs/.vscode/launch.json b/wps_jobs/.vscode/launch.json deleted file mode 100644 index a132983b9d..0000000000 --- a/wps_jobs/.vscode/launch.json +++ /dev/null @@ -1,68 +0,0 @@ -{ - // Use IntelliSense to learn about possible attributes. - // Hover to view descriptions of existing attributes. - // For more information, visit: https://go.microsoft.com/fwlink/?linkid=830387 - "version": "0.2.0", - "configurations": [ - { - "name": "env_canada GDPS", - "type": "python", - "justMyCode": false, - "request": "launch", - "module": "wps_jobs.weather_model_jobs.env_canada", - "args": [ - "GDPS" - ] - }, - { - "name": "env_canada HRDPS", - "type": "python", - "request": "launch", - "module": "wps_jobs.weather_model_jobs.env_canada", - "args": [ - "HRDPS" - ] - }, - { - "name": "env_canada RDPS", - "type": "python", - "request": "launch", - "module": "wps_jobs.weather_model_jobs.env_canada", - "args": [ - "RDPS" - ] - }, - { - "name": "noaa GFS", - "type": "python", - "request": "launch", - "module": "wps_jobs.weather_model_jobs.noaa", - "args": [ - "GFS" - ] - }, - { - "name": "noaa NAM", - "type": "python", - "request": "launch", - "module": "wps_jobs.weather_model_jobs.noaa", - "args": [ - "NAM" - ] - }, - { - "name": "fuel layer processor job", - "type": "debugpy", - "request": "launch", - "module": "wps_jobs.fuel_raster", - "console": "integratedTerminal", - "args": [] - }, - { - "name": "ecmwf IFS", - "type": "python", - "request": "launch", - "module": "wps_jobs.weather_model_jobs.ecmwf", - }, - ] -} \ No newline at end of file diff --git a/wps_jobs/.vscode/settings.json b/wps_jobs/.vscode/settings.json deleted file mode 100644 index 2eb6536832..0000000000 --- a/wps_jobs/.vscode/settings.json +++ /dev/null @@ -1,6 +0,0 @@ -{ - "python.defaultInterpreterPath": "${workspaceFolder}/.venv/bin/python", - "python.testing.pytestEnabled": true, - "python.testing.unittestEnabled": false, - "python.testing.promptToConfigure": true, -} \ No newline at end of file diff --git a/wps_jobs/README.md b/wps_jobs/README.md deleted file mode 100644 index e69de29bb2..0000000000 diff --git a/wps_jobs/openshift/wps_jobs_base/README.md b/wps_jobs/openshift/wps_jobs_base/README.md deleted file mode 100644 index 22c7aba00e..0000000000 --- a/wps_jobs/openshift/wps_jobs_base/README.md +++ /dev/null @@ -1,33 +0,0 @@ -# wps-jobs-base image - -The Docker image and template in this directory are used to create the base image used in the wps_jobs build. - -- Using this base image can save some time, as it installs some various packages that take a long time to install and don't change often, such as GDAL. - -## working in dev - -Update the build config with your GIT_BRANCH and VERSION. - -```bash -oc -n e1e498-tools process -p GIT_BRANCH=my-branch process -p VERSION=dd-mm-yyyy -f ./openshift/build.yaml | oc -n e1e498-tools apply -f - -``` - -Kick off a build - -```bash -oc -n e1e498-tools start-build wps-jobs-base --follow -``` - -## imagestream management - -Once you are happy with your changes to the wps-jobs-base image, tag the current prod image as prod-old just in case. - -```bash -oc -n e1e498-tools tag wps-jobs-base:prod wps-jobs-base:old-prod -``` - -Now tag the new image you are happy with as prod - -```bash -oc -n e1e498-tools tag wps-jobs-base:dev wps-jobs-base:prod -``` diff --git a/wps_jobs/openshift/wps_jobs_base/docker/Dockerfile b/wps_jobs/openshift/wps_jobs_base/docker/Dockerfile deleted file mode 100644 index ffcdf71de4..0000000000 --- a/wps_jobs/openshift/wps_jobs_base/docker/Dockerfile +++ /dev/null @@ -1,33 +0,0 @@ -FROM ghcr.io/osgeo/gdal:ubuntu-small-3.9.2 -# in order to make the image public on GHCR, we need to add this label -LABEL org.opencontainers.image.source="https://github.com/bcgov/wps" - -# We don't want to run our app as root, so we define a worker user. -ARG USERNAME=worker -ARG USER_UID=1010 -ENV POETRY_VERSION 1.8.5 - -# Tell r-base not to wait for interactive input. -ENV DEBIAN_FRONTEND=noninteractive - -# Install pre-requisites -RUN apt-get update --fix-missing && apt-get -y install build-essential curl git python3 python3-dev python-is-python3 python3-pip \ - libgeos-dev libpq-dev libproj-dev libsqlite3-dev libtirpc-dev libudunits2-dev \ - && apt-get clean - -RUN curl -sSL https://install.python-poetry.org > /tmp/install.python-poetry.org - -# When our app is running, we want to allow poetry full access to the workers home directory. -# Add the worker user with UID 1000 -# +x : to execute the poetry binary -# +r : to read poetry cache -RUN useradd --uid "$USER_UID" -m "$USERNAME" && chmod a+rx /home/"$USERNAME" - -USER $USERNAME -ENV PATH="/home/${USERNAME}/.local/bin:${PATH}" - -# # Set the working directory to the user's home directory -WORKDIR /home/$USERNAME - -# # Install poetry -RUN cat /tmp/install.python-poetry.org | python3 - \ No newline at end of file diff --git a/wps_jobs/openshift/wps_jobs_base/openshift/build.yaml b/wps_jobs/openshift/wps_jobs_base/openshift/build.yaml deleted file mode 100644 index 0194226980..0000000000 --- a/wps_jobs/openshift/wps_jobs_base/openshift/build.yaml +++ /dev/null @@ -1,65 +0,0 @@ -apiVersion: template.openshift.io/v1 -kind: Template -metadata: - creationTimestamp: null - name: wps-jobs-base -labels: - app: ${NAME}${SUFFIX} - phase: build - app.kubernetes.io/name: wps-jobs-base - app.kubernetes.io/managed-by: template - app.kubernetes.io/version: "ubuntu.24.04" -parameters: - - name: NAME - value: wps-jobs-base - - name: SUFFIX - - name: VERSION - description: Output version - required: true - - name: GIT_URL - value: https://github.com/bcgov/wps.git - - name: GIT_BRANCH - value: main -objects: - #ImageStream is created if it doesn't already exist - - apiVersion: v1 - kind: ImageStream - metadata: - annotations: - openshift.io/generated-by: OpenShiftNewBuild - labels: - app: wps-jobs-base - common: "true" - name: wps-jobs-base - spec: - lookupPolicy: - local: false - - apiVersion: v1 - kind: BuildConfig - metadata: - annotations: - openshift.io/generated-by: OpenShiftNewBuild 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-[tool.poetry.dependencies] -python = ">=3.12.3,<4.0" -wps-shared = { path = "../wps_shared" } -scipy = "^1.15.2" -scikit-learn = "^1.6.1" -sqlalchemy = "^2.0.38" -redis = "^7.0.0" -psycopg2-binary = "^2.9.10" -asyncpg = "^0.30.0" -affine = "^2.4.0" -numpy = "2.1" -fastapi = "0.115.11" -xarray = "^2025.3.1" -herbie-data = "^2025.11.1" - - -[tool.poetry.group.dev.dependencies] -pytest = "^9.0.0" -pytest-mock = "^3" -coverage = "^7.6.4" -ruff = "^0.11.5" -ipykernel = "^6.29.5" -pytest-cov = "^7.0.0" -pytest-xdist = "^3.6.1" - -[build-system] -requires = ["poetry-core"] -build-backend = "poetry.core.masonry.api" diff --git a/wps_jobs/tests/weather_models/test_machine_learning.py b/wps_jobs/tests/weather_models/test_machine_learning.py deleted file mode 100644 index 45160f15b1..0000000000 --- a/wps_jobs/tests/weather_models/test_machine_learning.py +++ /dev/null @@ -1,133 +0,0 @@ -from datetime import datetime -import pytest -from wps_shared.db.models.observations import HourlyActual -from wps_jobs.weather_model_jobs import machine_learning -from tests.weather_models.crud import (get_actuals_left_outer_join_with_predictions, - get_accumulated_precip_by_24h_interval, - get_predicted_daily_precip) -from wps_shared.db.models.weather_models import ModelRunPrediction, PredictionModel -from wps_jobs.weather_model_jobs.machine_learning import StationMachineLearning -import math - - -@pytest.fixture() -def mock_get_actuals_left_outer_join_with_predictions(monkeypatch): - """ Mock out call to DB returning actuals macthed with predictions """ - monkeypatch.setattr(machine_learning, 'get_actuals_left_outer_join_with_predictions', - get_actuals_left_outer_join_with_predictions) - -@pytest.fixture() -def mock_get_accumulated_precip_by_24h_interval(monkeypatch): - """ Mock out call to DB returning actual 24 hour precipitation data """ - monkeypatch.setattr(machine_learning, 'get_accumulated_precip_by_24h_interval', - get_accumulated_precip_by_24h_interval) - -@pytest.fixture() -def mock_get_predicted_daily_precip(monkeypatch): - """ Mock out call to DB returning modelled/predicted 24 hour precipitation data """ - monkeypatch.setattr(machine_learning, 'get_predicted_daily_precip', - get_predicted_daily_precip) - -def test_bias_adjustment_with_samples(mock_get_actuals_left_outer_join_with_predictions, - mock_get_accumulated_precip_by_24h_interval, - mock_get_predicted_daily_precip): - predict_date_with_samples = datetime.fromisoformat("2020-09-03T21:14:51.939836+00:00") - - machine_learner = StationMachineLearning( - session=None, - model=PredictionModel(id=1), - target_coordinate=[ - -120.4816667, - 50.6733333 - ], - station_code=None, - max_learn_date=datetime.now()) - machine_learner.learn() - - temp_result = machine_learner.predict_temperature(20, predict_date_with_samples) - rh_result = machine_learner.predict_rh(50, predict_date_with_samples) - wdir_result = machine_learner.predict_wind_direction(10, 120, predict_date_with_samples) - precip_result = machine_learner.predict_precipitation(3, datetime(2023,10,26,20,0,0)) - assert temp_result == 30 - assert rh_result == 100 - assert math.isclose(wdir_result, 115.51556685719027) - assert precip_result == 3 - -def test_bias_adjustment_of_rh_above_100(monkeypatch, - mock_get_accumulated_precip_by_24h_interval, - mock_get_predicted_daily_precip): - - def get_actuals_and_predictions_with_high_rh(*args): - """ Two actual/prediction pairs to force a prediction of rh above 100. """ - return [ - [HourlyActual(weather_date=datetime(2020, 10, 10, 18), - temperature=20, - temp_valid=True, - wind_speed=10, - wind_direction=90, - relative_humidity=105, - rh_valid=True), - ModelRunPrediction(tmp_tgl_2=2, - rh_tgl_2=105, - apcp_sfc_0=2, - wind_tgl_10=11, - wdir_tgl_10=97, - prediction_timestamp=datetime(2020, 10, 10, 18))], - [HourlyActual(weather_date=datetime(2020, 10, 10, 21), - temperature=30, - temp_valid=True, - wind_speed=12, - wind_direction=120, - relative_humidity=105, - rh_valid=True), - ModelRunPrediction(tmp_tgl_2=1, - rh_tgl_2=105, - apcp_sfc_0=3, - wind_tgl_10=11, - wdir_tgl_10=101, - prediction_timestamp=datetime(2020, 10, 10, 21))], - ] - monkeypatch.setattr(machine_learning, 'get_actuals_left_outer_join_with_predictions', - get_actuals_and_predictions_with_high_rh) - - predict_date_with_samples = datetime.fromisoformat("2020-09-03T21:14:51.939836+00:00") - - machine_learner = StationMachineLearning( - session=None, - model=PredictionModel(id=1), - target_coordinate=[ - -120.4816667, - 50.6733333 - ], - station_code=None, - max_learn_date=datetime.now()) - machine_learner.learn() - - rh_result = machine_learner.predict_rh(105, predict_date_with_samples) - assert rh_result == 100 - - -def test_bias_adjustment_without_samples(mock_get_actuals_left_outer_join_with_predictions, - mock_get_accumulated_precip_by_24h_interval, - mock_get_predicted_daily_precip): - predict_date_without_samples = datetime.fromisoformat("2020-09-03T01:14:51.939836+00:00") - - machine_learner = StationMachineLearning( - session=None, - model=PredictionModel(id=1), - target_coordinate=[ - -120.4816667, - 50.6733333 - ], - station_code=None, - max_learn_date=datetime.now()) - machine_learner.learn() - - temp_result = machine_learner.predict_temperature(20, predict_date_without_samples) - rh_result = machine_learner.predict_rh(50, predict_date_without_samples) - wdir_result = machine_learner.predict_wind_direction(10, 290, predict_date_without_samples) - precip_result = machine_learner.predict_precipitation(3, predict_date_without_samples) - assert temp_result is None - assert rh_result is None - assert wdir_result is None - assert precip_result is None diff --git a/wps_jobs/tests/weather_models/test_noaa_gfs.py b/wps_jobs/tests/weather_models/test_noaa_gfs.py deleted file mode 100644 index 5a6cee2f10..0000000000 --- a/wps_jobs/tests/weather_models/test_noaa_gfs.py +++ /dev/null @@ -1,161 +0,0 @@ -""" Unit tests for app/jobs/noaa.py """ - -import os -import logging -from datetime import datetime, timezone -from tests.weather_models.test_models_common import MockResponse, shape, mock_get_model_run_predictions -import pytest -import requests -from geoalchemy2.shape import from_shape -from wps_jobs.weather_model_jobs import common_model_fetchers -import wps_shared.db.crud.weather_models -from wps_shared.db.models.weather_models import PredictionModel, PredictionModelGridSubset, PredictionModelRunTimestamp, ProcessedModelRunUrl -from wps_jobs.weather_model_jobs import noaa -import wps_shared.utils.time as time_utils - - -logger = logging.getLogger(__name__) - - -@pytest.fixture() -def mock_get_model_run_predictions_for_grid(monkeypatch): - """ Mock out call to DB returning predictions """ - - monkeypatch.setattr( - common_model_fetchers, 'get_model_run_predictions_for_grid', mock_get_model_run_predictions) - - -@pytest.fixture() -def mock_database(monkeypatch): - """ Mocked out database queries """ - gfs_url = ('https://www.ncei.noaa.gov/data/global-forecast-system/access/grid-004-0.5-degree/' - 'forecast/202302/20230219/gfs_4_20230219_0600_018.grb2') - gfs_processed_model_run = ProcessedModelRunUrl(url=gfs_url) - gfs_prediction_model = PredictionModel(id=1, - abbreviation='GFS', - projection='lonlat.0.25deg', - name='Global Forecast System') - gfs_prediction_model_run = PredictionModelRunTimestamp( - id=1, prediction_model_id=1, prediction_run_timestamp=time_utils.get_utc_now(), - prediction_model=gfs_prediction_model, complete=True) - - def mock_get_gfs_prediction_model_run_timestamp_records(*args, **kwargs): - return [(gfs_prediction_model_run, gfs_prediction_model)] - - def mock_get_processed_file_record(session, url: str): - # We only want the one file to be processed - otherwise our test takes forever - if url != gfs_url: - return gfs_processed_model_run - return None - - def mock_get_grids_for_coordinate(session, prediction_model, coordinate): - return [PredictionModelGridSubset( - id=1, prediction_model_id=gfs_prediction_model.id, geom=from_shape(shape)), ] - - def mock_get_prediction_run(*args, **kwargs): - return gfs_prediction_model_run - - monkeypatch.setattr(noaa, 'get_processed_file_record', mock_get_processed_file_record) - monkeypatch.setattr(common_model_fetchers, 'get_prediction_model_run_timestamp_records', - mock_get_gfs_prediction_model_run_timestamp_records) - monkeypatch.setattr(common_model_fetchers, 'get_grids_for_coordinate', mock_get_grids_for_coordinate) - monkeypatch.setattr(wps_shared.db.crud.weather_models, "get_prediction_run", mock_get_prediction_run) - - -@pytest.fixture() -def mock_download(monkeypatch): - """ fixture for NOAA download """ - def mock_requests_get_gfs(*args, **kwargs): - """ mock common_model_fetchers download method for GFS """ - dirname = os.path.dirname(os.path.realpath(__file__)) - filename = os.path.join( - dirname, 'gfs_4_20230219_0600_018.grb2') - with open(filename, 'rb') as file: - content = file.read() - return MockResponse(status_code=200, content=content) - monkeypatch.setattr(requests, 'get', mock_requests_get_gfs) - - -def test_get_gfs_model_run_download_urls_for_00_utc(): - # March 2 at 00:00 UTC is equivalent to March 1 in Eastern timezone - should return URL for previous day - # for a given date and model run cycle, there should be 2 time intervals * 10 days into future (11 days total) - expected_num_of_urls = 2 * 11 - actual_urls = list(noaa.get_gfs_model_run_download_urls(datetime(2023, 3, 2, 00, tzinfo=timezone.utc), '00')) - assert len(actual_urls) == expected_num_of_urls - assert actual_urls[0] == noaa.GFS_BASE_URL + 'dir=%2Fgfs.20230301%2F00%2Fatmos&file=gfs.t00z.pgrb2.0p25.f018&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48' - assert actual_urls[-1] == noaa.GFS_BASE_URL + 'dir=%2Fgfs.20230301%2F00%2Fatmos&file=gfs.t00z.pgrb2.0p25.f261&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48' - - -def test_get_gfs_model_run_download_urls_for_06_utc(): - # Feb 15 at 06:00 UTC is still Feb 15 (at 02:00) in Eastern timezone - should return URL for same day - # for a given date and model run cycle, there should be 2 time intervals * 10 days into future (11 days total incl. today) - expected_num_of_urls = 2 * 11 - actual_urls = list(noaa.get_gfs_model_run_download_urls(datetime(2023, 2, 15, 6, tzinfo=timezone.utc), '06')) - assert len(actual_urls) == expected_num_of_urls - assert actual_urls[0] == noaa.GFS_BASE_URL + 'dir=%2Fgfs.20230215%2F06%2Fatmos&file=gfs.t06z.pgrb2.0p25.f012&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48' - assert actual_urls[1] == noaa.GFS_BASE_URL + 'dir=%2Fgfs.20230215%2F06%2Fatmos&file=gfs.t06z.pgrb2.0p25.f015&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48' - assert actual_urls[-1] == noaa.GFS_BASE_URL + 'dir=%2Fgfs.20230215%2F06%2Fatmos&file=gfs.t06z.pgrb2.0p25.f255&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48' - - -def test_get_gfs_model_run_download_urls_for_12_utc(): - # March 9 at 12:00 UTC is still March 9 in Eastern timezone - should return URL for same day - # for a given date and model run cycle, there should be 2 time intervals * 10 days into future (11 days total incl. today) - expected_num_of_urls = 2 * 11 - actual_urls = list(noaa.get_gfs_model_run_download_urls(datetime(2023, 3, 9, 12, tzinfo=timezone.utc), '12')) - assert len(actual_urls) == expected_num_of_urls - assert actual_urls[0] == noaa.GFS_BASE_URL + 'dir=%2Fgfs.20230309%2F12%2Fatmos&file=gfs.t12z.pgrb2.0p25.f006&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48' - assert actual_urls[1] == noaa.GFS_BASE_URL + 'dir=%2Fgfs.20230309%2F12%2Fatmos&file=gfs.t12z.pgrb2.0p25.f009&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48' - assert actual_urls[-1] == noaa.GFS_BASE_URL + 'dir=%2Fgfs.20230309%2F12%2Fatmos&file=gfs.t12z.pgrb2.0p25.f249&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48' - - -def test_get_gfs_model_run_download_urls_for_18_utc(): - # Jan 27 at 18:00 UTC is still Jan 27 in Eastern timezone - should return URL for same day - # for a given date and model run cycle, there should be 2 time intervals * 10 days into future (11 days total incl. today) - expected_num_of_urls = 2 * 11 - actual_urls = list(noaa.get_gfs_model_run_download_urls(datetime(2023, 1, 27, 18, tzinfo=timezone.utc), '18')) - assert len(actual_urls) == expected_num_of_urls - assert actual_urls[0] == noaa.GFS_BASE_URL + 'dir=%2Fgfs.20230127%2F18%2Fatmos&file=gfs.t18z.pgrb2.0p25.f000&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48' - assert actual_urls[1] == noaa.GFS_BASE_URL + 'dir=%2Fgfs.20230127%2F18%2Fatmos&file=gfs.t18z.pgrb2.0p25.f003&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48' - assert actual_urls[-1] == noaa.GFS_BASE_URL + 'dir=%2Fgfs.20230127%2F18%2Fatmos&file=gfs.t18z.pgrb2.0p25.f243&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48' - - -def test_parse_url_for_timestamps_simple(): - """ simple test case for noaa.parse_url_for_timestamps(): model_run_timestamp and prediction_timestamp - are on the same day """ - url = 'https://nomads.ncep.noaa.gov/cgi-bin/filter_gfs_0p25.pl?dir=%2Fgfs.20230413%2F12%2Fatmos&file=gfs.t12z.pgrb2.0p25.f006&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48' - expected_model_run_timestamp = datetime(2023, 4, 13, 12, 0, tzinfo=timezone.utc) - expected_prediction_timestamp = datetime(2023, 4, 13, 18, 0, tzinfo=timezone.utc) - actual_model_run_timestamp, actual_prediction_timestamp = noaa.parse_gfs_url_for_timestamps(url) - assert expected_model_run_timestamp == actual_model_run_timestamp - assert expected_prediction_timestamp == actual_prediction_timestamp - - -def test_parse_url_for_timestamps_complex(): - """ more complex test case for noaa.parse_url_for_timestamps(): model_run_timestamp and - prediction_timestamp are on different days """ - url = 'https://nomads.ncep.noaa.gov/cgi-bin/filter_gfs_0p25.pl?dir=%2Fgfs.20230413%2F18%2Fatmos&file=gfs.t18z.pgrb2.0p25.f243&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48' - expected_model_run_timestamp = datetime(2023, 4, 13, 18, 0, tzinfo=timezone.utc) - expected_prediction_timestamp = datetime(2023, 4, 23, 21, 0, tzinfo=timezone.utc) - actual_model_run_timestamp, actual_prediction_timestamp = noaa.parse_gfs_url_for_timestamps(url) - assert expected_model_run_timestamp == actual_model_run_timestamp - assert expected_prediction_timestamp == actual_prediction_timestamp - - -def test_get_year_mo_date_string_from_datetime(): - test_cases = [ - { - 'date': datetime(2023, 2, 14, 0, tzinfo=timezone.utc), - 'expected_year_mo_date': '20230214' - }, - { - 'date': datetime(2023, 6, 5, 0, tzinfo=timezone.utc), - 'expected_year_mo_date': '20230605' - }, - { - 'date': datetime(2023, 10, 31, 20, tzinfo=timezone.utc), - 'expected_year_mo_date': '20231031' - }, - ] - for test in test_cases: - actual_string = noaa.get_year_mo_date_string_from_datetime(test.get('date')) - assert test.get('expected_year_mo_date') == actual_string diff --git a/wps_jobs/tests/weather_models/test_noaa_nam.py b/wps_jobs/tests/weather_models/test_noaa_nam.py deleted file mode 100644 index 370c09259e..0000000000 --- a/wps_jobs/tests/weather_models/test_noaa_nam.py +++ /dev/null @@ -1,77 +0,0 @@ -""" Unit tests for app/jobs/noaa.py """ - -import logging -from datetime import datetime, timezone -from wps_jobs.weather_model_jobs import noaa - - -logger = logging.getLogger(__name__) - - -def test_get_nam_model_run_download_urls_for_00_utc(): - # March 2 at 00:00 UTC is equivalent to March 1 in Eastern timezone - should return URL for previous day - # for the 00 UTC run, there should be 13 urls (for hours 0, 12, 18, 20, 21, 24, 36, 42, 45, 48, 60, 66, 69) - expected_num_of_urls = 13 - actual_urls = list(noaa.get_nam_model_run_download_urls(datetime(2023, 3, 2, 00, tzinfo=timezone.utc), '00')) - assert len(actual_urls) == expected_num_of_urls - assert actual_urls[0] == noaa.NAM_BASE_URL + 'dir=%2Fnam.20230301&file=nam.t00z.awphys00.tm00.grib2&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48' - assert actual_urls[-1] == noaa.NAM_BASE_URL + 'dir=%2Fnam.20230301&file=nam.t00z.awphys69.tm00.grib2&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48' - - -def test_get_nam_model_run_download_urls_for_06_utc(): - # Feb 15 at 06:00 UTC is still Feb 15 (at 02:00) in Eastern timezone - should return URL for same day - # for the 06 UTC run, there should be 24 urls (for hours 0, 3, 6, 9, 12, 14, 15, 18, 21, 24, 27, 30, 33, 36, 39, 42, - # 45, 48, 51, 54, 57, 60, 63, 66) - expected_num_of_urls = 24 - actual_urls = list(noaa.get_nam_model_run_download_urls(datetime(2023, 2, 15, 6, tzinfo=timezone.utc), '06')) - assert len(actual_urls) == expected_num_of_urls - assert actual_urls[0] == noaa.NAM_BASE_URL + \ - 'dir=%2Fnam.20230215&file=nam.t06z.awphys00.tm00.grib2&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48' - assert actual_urls[1] == noaa.NAM_BASE_URL + 'dir=%2Fnam.20230215&file=nam.t06z.awphys03.tm00.grib2&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48' - assert actual_urls[-1] == noaa.NAM_BASE_URL + 'dir=%2Fnam.20230215&file=nam.t06z.awphys66.tm00.grib2&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48' - - -def test_get_nam_model_run_download_urls_for_12_utc(): - # March 9 at 12:00 UTC is still March 9 in Eastern timezone - should return URL for same day - # for the 12 UTC run, there should be 17 urls (for hours 0, 6, 8, 9, 12, 24, 30, 32, 33, 36, 48, 54, 57, 60, 72, 78, - # 81) - expected_num_of_urls = 17 - actual_urls = list(noaa.get_nam_model_run_download_urls(datetime(2023, 3, 9, 12, tzinfo=timezone.utc), '12')) - assert len(actual_urls) == expected_num_of_urls - assert actual_urls[0] == noaa.NAM_BASE_URL + 'dir=%2Fnam.20230309&file=nam.t12z.awphys00.tm00.grib2&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48' - assert actual_urls[1] == noaa.NAM_BASE_URL + 'dir=%2Fnam.20230309&file=nam.t12z.awphys06.tm00.grib2&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48' - assert actual_urls[-1] == noaa.NAM_BASE_URL + 'dir=%2Fnam.20230309&file=nam.t12z.awphys81.tm00.grib2&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48' - - -def test_get_nam_model_run_download_urls_for_18_utc(): - # Jan 27 at 18:00 UTC is still Jan 27 in Eastern timezone - should return URL for same day - # for the 18 UTC run, there should be 28 urls (for hours 0, 2, 3, 6, 9, 12, 15, 18, 21, 24, 26, 27, 30, 33, 36, 39, - # 42, 45, 48, 51, 54, 57, 60, 63, 66, 69, 72, 75) - expected_num_of_urls = 28 - actual_urls = list(noaa.get_nam_model_run_download_urls(datetime(2023, 1, 27, 18, tzinfo=timezone.utc), '18')) - assert len(actual_urls) == expected_num_of_urls - assert actual_urls[0] == noaa.NAM_BASE_URL + 'dir=%2Fnam.20230127&file=nam.t18z.awphys00.tm00.grib2&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48' - assert actual_urls[1] == noaa.NAM_BASE_URL + 'dir=%2Fnam.20230127&file=nam.t18z.awphys02.tm00.grib2&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48' - assert actual_urls[-1] == noaa.NAM_BASE_URL + 'dir=%2Fnam.20230127&file=nam.t18z.awphys75.tm00.grib2&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48' - - -def test_parse_url_for_timestamps_simple(): - """ simple test case for noaa.parse_url_for_timestamps(): model_run_timestamp and prediction_timestamp - are on the same day """ - url = noaa.NAM_BASE_URL + 'dir=%2Fnam.20230413&file=nam.t12z.awphys06.tm00.grib2&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48' - expected_model_run_timestamp = datetime(2023, 4, 13, 12, 0, tzinfo=timezone.utc) - expected_prediction_timestamp = datetime(2023, 4, 13, 18, 0, tzinfo=timezone.utc) - actual_model_run_timestamp, actual_prediction_timestamp = noaa.parse_nam_url_for_timestamps(url) - assert expected_model_run_timestamp == actual_model_run_timestamp - assert expected_prediction_timestamp == actual_prediction_timestamp - - -def test_parse_url_for_timestamps_complex(): - """ more complex test case for noaa.parse_url_for_timestamps(): model_run_timestamp and - prediction_timestamp are on different days """ - url = noaa.NAM_BASE_URL + 'dir=%2Fnam.20230413&file=nam.t18z.awphys27.grib2&var_APCP=on&var_RH=on&var_TMP=on&var_UGRD=on&var_VGRD=on&lev_surface=on&lev_2_m_above_ground=on&lev_10_m_above_ground=on&subregion=&toplat=60&leftlon=-139&rightlon=-114&bottomlat=48' - expected_model_run_timestamp = datetime(2023, 4, 13, 18, 0, tzinfo=timezone.utc) - expected_prediction_timestamp = datetime(2023, 4, 14, 21, 0, tzinfo=timezone.utc) - 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-[tool.poetry.dependencies] -python = ">=3.12.3,<4.0" -sqlalchemy = "^2" -aiohttp = "^3" -requests = "^2" -python-decouple = "^3" -geopandas = "^1.0.1" -shapely = "^2.0.5" -pydantic = "^2.10.6" -aiobotocore = "^2.0.0" -geoalchemy2 = "^0" -affine = "^2.4.0" -fastapi = "^0.115.11" -sentry-sdk = "^2.22.0" -pyjwt = "^2.10.1" -psycopg2-binary = "^2.9.10" -asyncpg = "^0.30.0" -redis = "^7.0.0" - - -[tool.poetry.group.dev.dependencies] -pytest = "^9.0.0" -pytest-mock = "^3" -coverage = "^7.6.4" -ruff = "^0.11.5" -testcontainers = { extras = ["postgres"], version = "^4.10.0" } -pytest-cov = "^7.0.0" - -[build-system] -requires = ["poetry-core"] -build-backend = "poetry.core.masonry.api" diff --git a/wps_shared/wps_shared/config.py b/wps_shared/wps_shared/config.py deleted file mode 100644 index 18d80a9bb3..0000000000 --- a/wps_shared/wps_shared/config.py +++ /dev/null @@ -1,20 +0,0 @@ -""" Configuration related code -""" -import logging -from decouple import config - -logger = logging.getLogger(__name__) - - -def get(key, default=None) -> str: - """ Use decouple.config to retreive values, logging a warning if the value is not found. - - - Using decouple.config in only one module, makes it easier to stub out calls to os.getenv. (No need to - stub it out per module, can just stub it once.) - - Using this function ensure that we retrieve environment variables in a consistent manner. (E.g. like - logging a warning if the variable isn't found, and ability to switch out config libraries.) - """ - value = config(key, default) - if value is None: - logger.warning('Expected environment variable (%s) not set.', key) - return value diff --git a/wps_shared/wps_shared/tests/__init__.py b/wps_shared/wps_shared/tests/__init__.py deleted file mode 100644 index e69de29bb2..0000000000 diff --git a/wps_shared/wps_shared/tests/db/__init__.py b/wps_shared/wps_shared/tests/db/__init__.py deleted file mode 100644 index e69de29bb2..0000000000