From 204c99b63cefde2c43ac7f56beb8fcd4387339c6 Mon Sep 17 00:00:00 2001 From: Yasset Perez-Riverol Date: Mon, 9 Mar 2026 10:21:01 +0000 Subject: [PATCH 1/3] Minro changes to check links --- .github/workflows/link-check.yml | 7 +++---- README.md | 16 ++++++++-------- 2 files changed, 11 insertions(+), 12 deletions(-) diff --git a/.github/workflows/link-check.yml b/.github/workflows/link-check.yml index 50cef184..3e8a37ca 100644 --- a/.github/workflows/link-check.yml +++ b/.github/workflows/link-check.yml @@ -38,10 +38,9 @@ jobs: --no-progress --timeout 30 --max-concurrency 3 - --max-retries 3 - --retry-wait-time 10 + --max-retries 5 + --retry-wait-time 15 '**/*.md' '**/*.adoc' + token: ${{ secrets.GITHUB_TOKEN }} fail: true - env: - GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} diff --git a/README.md b/README.md index 432363a5..cc5ba815 100644 --- a/README.md +++ b/README.md @@ -1,13 +1,13 @@ # Proteomics Sample Metadata Format -[![Version](https://flat.badgen.net/static/sdrf-proteomics/1.0.1/orange)](CHANGELOG.md) -[![License](https://flat.badgen.net/github/license/bigbio/proteomics-metadata-standard)](https://github.com/bigbio/proteomics-metadata-standard/blob/master/LICENSE) -[![Open Issues](https://flat.badgen.net/github/open-issues/bigbio/proteomics-metadata-standard)](https://github.com/bigbio/proteomics-metadata-standard/issues) -[![Open PRs](https://flat.badgen.net/github/open-prs/bigbio/proteomics-metadata-standard)](https://github.com/bigbio/proteomics-metadata-standard/pulls) -![Contributors](https://flat.badgen.net/github/contributors/bigbio/proteomics-metadata-standard) -![Watchers](https://flat.badgen.net/github/watchers/bigbio/proteomics-metadata-standard) -![Stars](https://flat.badgen.net/github/stars/bigbio/proteomics-metadata-standard) -[![llms.txt](https://flat.badgen.net/static/llms.txt/available/blue)](llms.txt) +[![Version](https://img.shields.io/badge/sdrf--proteomics-1.0.0-orange?style=flat)](CHANGELOG.md) +[![License](https://img.shields.io/github/license/bigbio/proteomics-metadata-standard?style=flat)](https://github.com/bigbio/proteomics-metadata-standard/blob/master/LICENSE) +[![Open Issues](https://img.shields.io/github/issues/bigbio/proteomics-metadata-standard?style=flat)](https://github.com/bigbio/proteomics-metadata-standard/issues) +[![Open PRs](https://img.shields.io/github/issues-pr/bigbio/proteomics-metadata-standard?style=flat)](https://github.com/bigbio/proteomics-metadata-standard/pulls) +![Contributors](https://img.shields.io/github/contributors/bigbio/proteomics-metadata-standard?style=flat) +![Watchers](https://img.shields.io/github/watchers/bigbio/proteomics-metadata-standard?style=flat) +![Stars](https://img.shields.io/github/stars/bigbio/proteomics-metadata-standard?style=flat) +[![llms.txt](https://img.shields.io/badge/llms.txt-available-blue?style=flat)](llms.txt) ## Improving metadata annotation of Proteomics datasets From 5a611ae0f982c05ea50e5afeddc8bbd1ac241e24 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" Date: Mon, 9 Mar 2026 10:21:36 +0000 Subject: [PATCH 2/3] Add PDF specification v1.1.0-dev --- ...rf-proteomics-specification-v1.1.0-dev.pdf | Bin 1987232 -> 1987232 bytes 1 file changed, 0 insertions(+), 0 deletions(-) diff --git a/psi-document/sdrf-proteomics-specification-v1.1.0-dev.pdf b/psi-document/sdrf-proteomics-specification-v1.1.0-dev.pdf index 683edd7c576280444be44aebb5c601779f39130b..5512f12f850a335f5d672c93e559b829b65acf2a 100644 GIT binary patch delta 115 zcmWl~s}+I(06@{B;s?J7h+j+&06Gcd5DBmA1{4z6Aq~}d=#(m y?SI*b103QA103T7r#Qn9=eWQnu5gVTjBtxFCYa(5Gu-0=k9fi}UNC=q?W-SP9XPB2 delta 115 zcmW;7JsN=k0D$2K5sJ!B37H%~n`?BOM#HyrgO;XdhcGzKw|gG%@^*dO_3iT$-0J%N z`d Date: Mon, 9 Mar 2026 10:24:01 +0000 Subject: [PATCH 3/3] Add PDF specification v1.1.0-dev --- ...rf-proteomics-specification-v1.1.0-dev.pdf | Bin 1987232 -> 1987232 bytes 1 file changed, 0 insertions(+), 0 deletions(-) diff --git a/psi-document/sdrf-proteomics-specification-v1.1.0-dev.pdf b/psi-document/sdrf-proteomics-specification-v1.1.0-dev.pdf index 5512f12f850a335f5d672c93e559b829b65acf2a..b3d4bd55a570e16a2251eab235c735604daacbc7 100644 GIT binary patch delta 113 zcmWN?xe41dD*e0B@oXd5S?T4lxn&&5clx6q5 y|EpSYgaL*)#t0`k#Tm{q#swz0#1*bF#SAyN#U1W3#{(94#1o$Jg4egVSN#JsayVK5 delta 113 zcmWN?DH4JJ06@_Z#062o1#xY58BW4+h=kwe1{9LnOE}|ke%DuCKQ#T&JU?MsJ-YAx xU)hQy3^2qoMmWJK&Tx(~E-=9*u5gVhX1KvE?r@Je9K`n5I7k2h