Update DIANN modifications error #711
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Conda Build | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 # Fetch all history for setuptools-scm | |
| - name: Set version for setuptools-scm | |
| run: | | |
| # Get current branch name | |
| BRANCH_NAME="${GITHUB_HEAD_REF:-${GITHUB_REF#refs/heads/}}" | |
| # Try to get version from git tags | |
| if git describe --tags --exact-match 2>/dev/null; then | |
| # On a tag - use the tag version | |
| VERSION=$(git describe --tags --exact-match | sed 's/^v//') | |
| else | |
| # Not on a tag - create dev version with branch name | |
| COMMIT_SHORT=$(git rev-parse --short HEAD) | |
| # Replace slashes with underscores for branch name (setuptools-scm format) | |
| BRANCH_SAFE=$(echo "$BRANCH_NAME" | sed 's/\//_/g') | |
| VERSION="0.0.0+${BRANCH_SAFE}.${COMMIT_SHORT}" | |
| fi | |
| echo "SETUPTOOLS_SCM_PRETEND_VERSION=$VERSION" >> $GITHUB_ENV | |
| echo "Building version: $VERSION (branch: $BRANCH_NAME)" | |
| - name: Set up Miniconda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: sdrf-pipelines-build | |
| auto-activate-base: false | |
| auto-update-conda: true | |
| python-version: '3.13' | |
| channels: bioconda,conda-forge,defaults | |
| - name: Install build dependencies | |
| run: | | |
| # conda-build registers the `conda build` subcommand on the conda it is | |
| # installed into; the running CLI is base conda, so install into base. | |
| conda install -n base -c conda-forge conda-build conda-verify anaconda-client | |
| - name: Verify conda recipe | |
| run: | | |
| conda run -n base conda-verify . | |
| - name: Build and test the sdrf-pipelines package | |
| run: | | |
| # conda build automatically runs the tests defined in meta.yaml test section | |
| conda run -n base conda build --package-format .tar.bz2 recipe | |
| env: | |
| SETUPTOOLS_SCM_PRETEND_VERSION: ${{ env.SETUPTOOLS_SCM_PRETEND_VERSION }} |