Bump org.apache.avro:avro from 1.12.0 to 1.12.1 #6159
dependabot[bot]gatk-tests.yml
on: pull_request
check if the environment has privileges
2s
build and push gatk docker to artifacts
3m 0s
Validate script WDLs using womtools
1m 41s
Validate generated WDLs using womtools
2m 17s
Matrix: wdlTests
Matrix: test
Matrix: testOnDocker
Annotations
10 errors and 3 warnings
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integration build and test Java 17.0.6+10
Process completed with exit code 1.
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Validate generated WDLs using womtools
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unit build and test Java 17.0.6+10
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cloud build and test Java 17.0.6+10
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build and push gatk docker to artifacts
buildx failed with: ERROR: failed to build: failed to solve: process "/bin/sh -c ls . && rm /etc/apt/sources.list.d/google-cloud-sdk.list && apt update && apt-key list && curl https://packages.cloud.google.com/apt/doc/apt-key.gpg | apt-key --keyring /usr/share/keyrings/cloud.google.gpg add - && add-apt-repository universe && apt update && apt-get --assume-yes install git-lfs && apt-get -y clean && apt-get -y autoclean && apt-get -y autoremove && rm -rf /var/lib/apt/lists/* && git lfs install --force && git lfs pull --include src/main/resources/large && export GRADLE_OPTS=\"-Xmx4048m -Dorg.gradle.daemon=false\" && /gatk/gradlew clean collectBundleIntoDir shadowTestClassJar shadowTestJar -Drelease=$RELEASE && cp -r $( find /gatk/build -name \"*bundle-files-collected\" )/ /gatk/unzippedJar/ && unzip -o -j $( find /gatk/unzippedJar -name \"gatkPython*.zip\" ) -d /gatk/unzippedJar/scripts && chmod -R a+rw /gatk/unzippedJar" did not complete successfully: exit code: 1
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WDL test RUN_M2_WDL on cromwell
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WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
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WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
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WDL test RUN_CNV_SOMATIC_WDL on cromwell
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WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
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integration build and test Java 17.0.6+10
No files were found with the provided path: build/reports/tests. No artifacts will be uploaded.
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unit build and test Java 17.0.6+10
No files were found with the provided path: build/reports/tests. No artifacts will be uploaded.
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cloud build and test Java 17.0.6+10
No files were found with the provided path: build/reports/tests. No artifacts will be uploaded.
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