Too big figures in the report

[scilexenko]

Hi,

I’ve been using your very helpful MicrobiomeStat package and wanted to generate a report. However, in the PDF version, the figures appear too large and don’t fit on the page.

I tried adjusting pdf.wid and pdf.hei, but it didn’t seem to help.

Could you advise on how to properly resize the figures?

Thank you for your help!

Best,
Ivan

[cafferychen777]

Dear Ivan,

Thank you for reaching out and for using MicrobiomeStat! I understand the issue with the figure sizing in the PDF report. Looking at the report generation code, I've noticed that the figure dimensions might be set too large. Let's adjust those parameters to make the figures fit properly on the page.

In the report template, please locate the chunk settings that look like this:

{r taxa-areaplot-longitudinal-print, echo=FALSE, message=FALSE, results=result.output, fig.align='center', fig.width = 25, fig.height = 15, warning = FALSE}

I recommend modifying the fig.width and fig.height parameters to more reasonable values:

Please try these adjusted parameters and let me know if the figures are now displaying at a more appropriate size in your PDF report.

Best regards,
Caffery