Merge pull request #67 from cancervariants/issue-66

Support conversion from ter --> *

Author: korikuzma

variant/__init__.py

@@ -3,7 +3,7 @@
 import os
 import logging
 
-__version__ = "0.1.4"
+__version__ = "0.1.5"
 
 APP_ROOT = Path(__file__).resolve().parents[0]
 

variant/tokenizers/caches/amino_acid_cache.py

@@ -36,6 +36,8 @@ def _convert_three_to_one(self, three_letter_amino_acid):
         :param str three_letter_amino_acid: Amino Acid Code to convert
         :return: A str of the one letter amino acid code
         """
+        if three_letter_amino_acid.upper() == 'TER':
+            return '*'
         for one_letter, three_letter in self._amino_acid_code_conversion.items():  # noqa: E501
             if three_letter.upper() == three_letter_amino_acid.upper():
                 return one_letter.upper()