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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method(plot,tin_obj)
S3method(print,tin_obj)
export(autofit)
export(check_CHIP_variants)
export(load_TINC_input)
export(load_VCF_CNA_DRAGEN)
export(load_VCF_Canvas)
export(load_VCF_Canvas_Manta)
export(load_VCF_Strelka)
export(load_VCF_smallVar_DRAGEN)
export(plot_full_page_report)
export(plot_simple_report)
export(random_TIN)
export(to_string)
import(CNAqc)
import(cli)
import(dplyr)
importFrom(BMix,Parameters)
importFrom(BMix,bmixfit)
importFrom(BMix,plot_clusters)
importFrom(BMix,plot_density)
importFrom(VIBER,choose_clusters)
importFrom(VIBER,plot_2D)
importFrom(VIBER,variational_fit)
importFrom(cowplot,plot_grid)
importFrom(crayon,black)
importFrom(crayon,blue)
importFrom(crayon,green)
importFrom(crayon,red)
importFrom(crayon,yellow)
importFrom(ggplot2,aes)
importFrom(ggplot2,alpha)
importFrom(ggplot2,coord_cartesian)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,coord_polar)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_abline)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_histogram)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_label)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_raster)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,guide_colorbar)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_brewer)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_fill_viridis_c)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_light)
importFrom(ggplot2,xlim)
importFrom(ggplot2,ylim)
importFrom(mobster,Clusters)
importFrom(mobster,ddbpmm)
importFrom(mobster,mobster_fit)
importFrom(mobster,plot.dbpmm)
importFrom(mobster,plot_entropy)
importFrom(mobster,plot_latent_variables)
importFrom(mobster,random_dataset)
importFrom(purrr,pmap_dfr)
importFrom(stats,complete.cases)
importFrom(stats,dbinom)
importFrom(stats,median)
importFrom(stats,qbinom)
importFrom(stats,rpois)
importFrom(stats,runif)
importFrom(stringr,str_detect)
importFrom(utils,read.table)
importFrom(vcfR,read.vcfR)