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Description
I have a Conda environment with the integration methods and dependencies installed. This is located at /home/reticulate_envs/seurat-integrate-methods
However, this command
UpdateEnvCache('bbknn', conda.env = "/home/reticulate_envs/seurat-integrate-methods",
conda.bin = "/home/reticulate/miniconda/bin/conda")
returns
environment ‘/home/reticulate_envs/seurat-integrate-methods’ already exists. Updating known conda environments and leaving
Warning in checkCondaEnv(CondaEnv(method = x@method, conda.bin = conda.bin, :
provided conda environment name (‘base’) does not match provided path to conda environment (‘/home/reticulate_envs/seurat-integrate-methods’)
and
getCache()
confirms that bbknn is not loaded.
Is there something I am doing obviously wrong here?
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