New version

[Slycopersicum]

Hi, with the new version of the package 1.3.1, option to have procesed ms1 and ms2 data in the same xcms object is lost.
Meanwhile I can run my script in 1.2.4 in the new version I get this message:
number of MSMS files MUST be identical to number of MS files .
When my xcms object is:
1 2
67536 64764
My question is there is a way to trick the function to make it work. Or how I could divide my xcms object to ms1 and
ms2, just to not preprocess all my samples two times, 1 for ms1 and 1 for ms2.

Thank you so much

[cbroeckl]

Hello @Slycopersicum. i have been slow to move to the newer versions of XCMS. i do not yet have an answer for this. working on it.