NTR: Illumina NextSeq 1000

[GLTOhorsman]

Proposed Term Label

Illumina NextSeq 1000

Proposed Associated Field(s)

sequencing instrument

Definition/Description

A DNA sequencer which is manufactured by the Illumina corporation using sequence-by-synthesis chemistry that fits on a benchtop and has an output capacity of 30-240 Gb.

Definition Source

www.illumina.com/systems/sequencing-platforms/nextseq-1000-2000/specifications.html

Guidance

Similar to the NextSeq 2000 term, the NextSeq 1000 model has been adopted in Canadian public health laboratories. This instrument term is not unique to the Cancogen standard and may apply to other repos

Alternative labels and/or synonyms

No response

Additional Comments (not an annotation)

No response

Optional - Contributor Attribution

No response

[cbarcl01]

Will add to CanCOGeN spec for new release.

[cbarcl01]

@GLTOhorsman for reference you can use Illumina NextSeq 1000 [GENEPIO:0004432], while I update the spec. Thanks!

[GLTOhorsman]

Happy to coordinate with https://github.com/GH-Emily and https://github.com/KirstenPalmier to phase in this term in the standard only once the NML LIMS export can support the export standard as well.

[cbarcl01]

@GLTOhorsman - OK great, might be worth seeing if there are any other sequencers that need adding as well.