quality-control.md

metaLinks	alternates https://app.gitbook.com/s/PvA82xvbvyt7rVs0IKXN/code-ocean-apps/quality-control

Quality Control

Logo	Title	Description	Input Data
	FastQC	FastQC is a quality control tool for high throughput sequence data. FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines.	fastq files
	MultiQC	This Capsule aggregates results from bioinformatics analyses across many samples into a single report.	html reports (most likely from FastQC)
	TensorBoard GPU	View model experiment metrics like loss and accuracy, visualizing the model graph, project embeddings to a lower dimensional space and more. This Capsule shows an example from the Tensorboard website. This Capsule runs on GPU instances and comes preloaded with Tensorflow.	None
	fastp	A tool designed to provide fast all-in-one preprocessing for FastQ files (adapter trimming, downsampling etc.). This tool is developed in C++ with multithreading supported to afford high performance.	.fastq files
	Trim Galore	Trim Galore is a wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data.	.fastq files