diff --git a/content/authors/HARMONY-2024/_index.md b/content/authors/HARMONY-2024/_index.md index f77ee355..6402075a 100644 --- a/content/authors/HARMONY-2024/_index.md +++ b/content/authors/HARMONY-2024/_index.md @@ -1,57 +1,59 @@ --- -title: HARMONY 2024 +title: HARMONY 2025 # Is this the primary user of the site? superuser: false -conf_date: 8-11 April, 2024 +conf_date: 15-18 April, 2025 (Tuesday to Friday) -conf_location: UCL, London, UK +conf_location: KU Leuven, Leuven, Belgium important_dates: - name: Breakouts and tutorials submission deadline - date: NOW CLOSED + date: February 16, 2025 - name: Notification of acceptance for breakout and tutorials - date: 3 Apr, 2024 + date: March 03, 2025 - name: Lightning talk and poster submission deadline - date: NOW CLOSED + date: February 23, 2025 - name: Notification of acceptance for lightning talks and posters - date: 3 Apr, 2024 -- name: Travel support applications NOW CLOSED - date: -- name: Notification of travel support awards - date: 21 February, 2024 + date: March 14, 2025 +- name: Registration deadline + date: March 21, 2025 +#- name: Travel support applications NOW CLOSED +# date: +#- name: Notification of travel support awards +# date: 21 February, 2024 important_links: -#- name: Agenda -# link: +- name: Agenda + link: TBA - name: Registration - link: https://forms.gle/ccGUNm8P3LcWkifG8 -- -- -- + link: https://forms.gle/BHRkSwZVii9dqnWd8 +- name: Break-outs and tutorials submission + link: https://forms.gle/TJzaMwLp7Q67RCwD6 +- name: Lightning talks and poster submission + link: https://forms.gle/o8P3zvfdaEoLKUao8 +#- information: - name: Registration description: Registration for the meeting is free. Please register at the link above as soon as possible. This will help us plan the schedule and match your interests to the timing of the breakouts, etc. Note, only registered attendees will be sent information related to the meeting. - link: https://forms.gle/ccGUNm8P3LcWkifG8 + link: https://forms.gle/BHRkSwZVii9dqnWd8 - name: Call for Breakout Sessions and Tutorials - description: All attendees can suggest breakout sessions for hacking and/or detailed discussions of certain aspects of one or several of the COMBINE standard(s), metadata and semantic annotations (format-specific or overarching), application and implementations of the COMBINE standards, or any other topic relevant for the COMBINE community. The topics for those breakout sessions, and the time slots which would suit their communities can be submitted via the link above. Note, breakout session organisers will be responsible for creating and hosting their own online sessions, if required. - link: https://forms.gle/yWn4Fqetj3pkGF3q8 + description: All attendees can suggest breakout sessions for hacking and/or detailed discussions of certain aspects of one or several of the COMBINE standard(s), metadata and semantic annotations (format-specific or overarching), application and implementations of the COMBINE standards, or any other topic relevant for the COMBINE community. The topics for those breakout sessions, and the time slots which would suit their communities can be submitted via the link above. Note, breakout session organizers will be responsible for creating and hosting their own online sessions, if required. + link: https://forms.gle/TJzaMwLp7Q67RCwD6 - name: Call for Lightning Talks and Posters description: Requests for a lightning talk (5 min max.) and/or poster can be submitted via the link above. Please use several forms if you want to submit abstracts on different topics. The submission deadline is outlined above. Talks will take place during the community session and posters will be displayed throughout the meeting. - link: https://forms.gle/eu8S3eUeS1AoAwwU6 -- name: Application for travel funding - description: We have limited funding for travel bursaries or contributions towards accommodation. These will be given out to those who have a significant contribution to make to the HARMONY meeting. - link: https://forms.gle/Ta72fwz5Bt2zb4YKA + link: https://forms.gle/o8P3zvfdaEoLKUao8 +#- name: Application for travel funding +# description: We have limited funding for travel bursaries or contributions towards accommodation. These will be given out to those who have a significant contribution to make to the HARMONY meeting. +# link: https://forms.gle/Ta72fwz5Bt2zb4YKA -topics: +Topics of Interest: - Data exchange, pipelines and model standards for systems and synthetic biology - Visualization and graphical notation standards for systems and synthetic biology -- Standards for sharing and analysing biological pathway data +- Standards for sharing and analyzing biological pathway data - Standards for computational biological models and modelling support - Metadata description and model annotation in COMBINE standard formats - Implementation of COMBINE standards in tools, databases and other resources @@ -63,159 +65,88 @@ topics: # Organizational groups that you belong to (for People widget) # Set this to `[]` or comment out if you are not using People widget. user_groups: -- Past Events +- Events --- -demo +demo
The "**Computational Modeling in Biology**" Network (**COMBINE**) is an initiative to coordinate the development of the various community standards and formats in systems biology, synthetic biology and related fields. HARMONY is a codefest-type meeting, with a focus on development of the standards, interoperability and infrastructure. There are generally not many general discussions or oral presentations during HARMONY; instead, the time is devoted to allowing hands-on hacking and interaction between people focused on practical development of software and standards. -HARMONY 2024 will be held at **University College London** +HARMONY 2025 will be held at **KU Leuven** -Local organizers are Sarah Keating (s.keating@ucl.ac.uk) and Padraig Gleeson, (p.gleeson@ucl.ac.uk). - - +Local organizers are Liesbet Geris, Luiz Ladeira, and Bernard Staumont.

Workshop Location

-demo - -HARMONY 2024 will be held at [Centre For Medical Image Computing](https://www.ucl.ac.uk/medical-image-computing/ucl-centre-medical-image-computing-cmic), University College London, 90 High Holborn, London, WC1V 6LJ. - -On entering the building turn left to find the reception desk which is hidden away in the left hand corner. The receptionist will let you through to the lifts to the first floor, where somebody will be waiting to let you in. +HARMONY 2025 will be held at **KU Leuven** - Katholieke Universiteit Leuven +Ghb - Onderwijs en Navorsing 2 +ON2 Herestraat 49 +3000 Leuven - Belgium +Building number: 402-18 -You should have received an invitation to the meeting mailing list harmony_2024 @ googlegroups.com which will be used for communications. + +

Schedule

-The schedule is available below. People who have attended HARMONY in the past will know that this is inclined to change as participants make their own arrangements for conversations/discussions. A link to the editable version will be sent to the mailing list. +The schedule will be available here. + +

Arrival and Transportation

+From Brussels-Zaventem Airport (BRU) you can take a train at the airport station to Leuven Central Station and then a bus at the bus station in front of the train station. The R90 should take around 14min to arrive at the Leuven Gasthuisberg Campus stop, just in front of the venue. -[Schedule](https://docs.google.com/spreadsheets/d/1woY3WHoI1y3AheDrSqgR6CHF6yMSbv8z5I8mQxrH9aA/edit?usp=sharing) -
+From Brussels South-Charleroi Airport (CRL) you can take a bus, taxi or shuttle to Charleroi Central train station and take a train to Leuven from there. Shuttles to Midi (Zuid) station in Brussels and then a train to Leuven from there is also an option. -[Abstract book](https://docs.google.com/document/d/1KgmRNDIe-dWBmSTGbOTHqQJMo4K-UtWnDk1Sto7DqME/edit?usp=sharing) -
+Leuven is a very cyclable city. If you come by train or car you can bring your bike and enjoy the beautiful city! -[Break out booklet](https://docs.google.com/document/d/1ad6hnFb7gaoMLupxnZc-w7FEvxFr9jHhSVJLku8K0Y4/edit?usp=sharing) +

Sister Meetings

-[More on ARC Tech Socials](https://www.ucl.ac.uk/advanced-research-computing/community/techsocial-series) +**9th Disease Maps Community Meeting - DMCM2025** +Simultaneously from 15th to 17th April 2025 at the same venue. - -

Arrival and Transportation

+The 2025 edition of the Disease Maps Community Meeting is set to take place in Leuven, Belgium. This annual gathering brings together the researchers, clinicians, and domain experts involved in mapping and modelling disease mechanisms. The meeting provides a forum for exchanging best practices, sharing information, and developing tools to advance the use of systems medicine in translational medicine projects and decision making support. Building on the success of previous editions in locations like Belval, Maastricht, Sevilla, and Paris, the 2025 meeting in Leuven is expected to attract a diverse group of participants dedicated to furthering the understanding and application of disease maps in research and healthcare. -London is served by [six international airports](https://www.visitlondon.com/traveller-information/travel-to-london/airport) and [twelve major stations](https://www.visitlondon.com/traveller-information/travel-to-london/trains-to-london) including St. Pancras International, which is the Eurostar hub, with multiple direct connections to Europe. +The DMCM2025 will be held simultaneously with HARMONY 2025, in the same venue. This is expected to enhance interaction between the COMBINE and the Disease Maps communities, fostering collaboration opportunities and networking. Coffee breaks and meals will be shared between both meetings. -Travel within London can be done by Tube, Bicycle, Bus, Taxi and more. [More information can be found here](https://www.visitlondon.com/traveller-information/getting-around-london). +More information can be found here: [DMCM2025](https://disease-maps.io/DMCM2025/). -

Accommodations and meals

+To have access to the DMCM talks, registrations should be done separately. -Tea and coffee will be freely available throughout the meeting. In view of the number of people using the building, it may be advisable to bring your own mug! +**byteMAL'25** -A sandwich lunch will also be provided - please make sure you give us the correct information as to which days you will be in attendance when you fill in the registration form. +Monday 14th April 2025 -### Visa +ByteMAL is a conference created by and for early-career researchers in the fields of bioinformatics and systems biomedicine and aims to provide a networking platform for knowledge and expertise exchange across borders. Aiming to vitalize communication amongst researchers from The Netherlands, Belgium, and Germany, ByteMAL has been hosted alternately by the +Universities of Maastricht, Aachen, and Liege and for the first time it comes to Leuven! More information will be announced soon. -Given that the UK is no longer part of the EU, visa requirements may have changed for you. Please check [here](https://www.gov.uk/check-uk-visa). If you need a letter to support your application, please contact one of the organizers. -Additionally, if you need confirmation that a talk/poster/breakout session will be accepted before the confirmation deadline, please get in contact. +

Accommodations and meals

-

Power outlet

+[Hotel Mille Colonnes](https://hotelmillecolonnes.be/fr/) +Martelarenplein 5, 3000 Leuven, Belgium +In front of the train station, easy access to the bus station. +Distance to the conference venue: 14 min by bus, 14 min by bike, 45 min walking. -demo +[ibis Leuven Centrum](https://ibis.accor.com/en/destination/city/hotels-leuven-v2267.html) +Brusselsestraat 52, 3000 Leuven, Belgium +At the core of the city center, easy access to bus stops. +Distance to the conference venue: 13 min by bus. 9 min by bike. 28 min walking. -[G-type](https://www.endesa.com/en/blogs/endesa-s-blog/light/types-plugs-travel#:~:text=G%2Dtype%20plugs%2C%20the%20most,a%20triangular%20or%20t%20position.) plugs are used in the UK. +Other accommodations options can be found on [Booking.com](https://booking.com/) and [Airbnb](https://airbnb.com/) (specially if you want to stay closer to the venue). +Tea and coffee will be freely available throughout the meeting. In view of the number of people using the building, it may be advisable to bring your own mug! -

Support

+A sandwich lunch will also be provided - please make sure you give us the correct information as to which days you will be in attendance and any dietary requirements when you fill in the registration form. -This meeting has been generously supported by the Kavli Foundation. +

Power outlet

-demo -
+demo +[E-type](https://www.netio-products.com/en/glossary/type-e-fr-electrical-socketelectrical-plug#:~:text=This%20electrical%20socket%20is%20common,socket%20has%20a%20round%20recess.) plugs are used in Belgium. + +

Support

-### Attendees - in person - -| Name | Organization | Interests | -| :--- | :--- | :--- | -| Alex Fedorec | UCL | COMBINE Archive, Multicellular modeling, SBML, SBOL and SBOL Visual, SED-ML | -| Ankur Sinha | UCL | CellML, COMBINE Archive, Multicellular modeling, NeuroML, OMEX Metadata, SBML, SED-ML, Open Source Brain: https://opensourcebrain.org | -| Augustin Luna | National Library of Medicine | BioPAX, SBGN, SBML, sbgn.org; pathwaycommons.org | -| Carolus Vitalis | University of Colorado Boulder | SBOL and SBOL Visual | -| Casey Chen | UCL | Multicellular modeling, SBML, SBOL and SBOL Visual | -| Chris Barnes | UCL | Multicellular modeling, SBML, SBOL and SBOL Visual | -| Chris Myers | CU Boulder | COMBINE Archive, SBML, SBOL and SBOL Visual, SED-ML, iBioSim, SynBioHub, SBOLCanvas | -| Dilan Pathirana | University of Bonn | CellML, SBML, SED-ML, PE-TAB, PEtab extensions (timecourses, model selection, NLME) | -| Eleonora Bernasconi | University of Herfordshire, Hatfield, Hertfordshire, AL10 9AB, UK | NeuroML, I am a PhD student working on a large scale, biologically realistic model of the cerebellar cortex. | -| Fabian Fröhlich | The Francis Crick Institute | BioPAX, SBML, PE-TAB | -| Felipe Xavier Buson | Universit of Cambridge | SBOL and SBOL Visual | -| Fengkai Zhang | NIH | COMBINE Archive, Multicellular modeling, OMEX Metadata, SBGN, SBML, SED-ML, Simmune. SBML-Multi and rule-based model | -| Frank Bergmann | BioQUANT, Heidelberg University, INF 267 | COMBINE Archive, SBML, SED-ML, PE-TAB, FROG, COPASI - modeling, simulation and analysis environment for biochemical networks, https://copasi.org. basico - a convenient python interface to COPASI, https://basico.rtfd.io/ | -| Georgie Sorensen | University of Bristol | SBOL and SBOL Visual | -| Goksel Misirli | Keele University, School of Computer Science and Mathematics | Multicellular modeling, OMEX Metadata, SBML, SBOL and SBOL Visual, SBOL3 Java Library | -| Gonzalo Vidal | University of Colorado Boulder, Boulder, Colorado, US | SBML, SBOL and SBOL Visual, https://gonza10v.github.io/ | -| Hugh Sorby | Auckland Bioengineering Institute | CellML, SED-ML | -| Ion Moraru | UConn Health, Farmington, CT, USA | COMBINE Archive, NeuroML, OMEX Metadata, SBML, SED-ML, BioSimulations, VCell | -| Jörn Starruß | Technische Universität Dresden | CellML, Multicellular modeling, SBML, SED-ML, PE-TAB, MorpheusML, Morpheus, | -| Jona Leka | UCL | NeuroML | -| Kathleen Zhang | UCL | BioPAX, CellML, COMBINE Archive, Multicellular modeling, NeuroML, OMEX Metadata, SBGN, SBML, SBOL and SBOL Visual, SED-ML, PE-TAB, FROG | -| Louie Destouches | UCL | Multicellular modeling, SBML, SBOL and SBOL Visual | -| Lucian Smith | University of Washington, Seattle, WA | COMBINE Archive, Multicellular modeling, OMEX Metadata, SBML, SED-ML, FROG, Tellurium, Roadrunner, and Antimony (https://tellurium.readthedocs.io/) | -| Lukas Buecherl | University of Colorado Boulder | COMBINE Archive, SBML, SBOL and SBOL Visual, SED-ML | -| Manuel Lera Ramirez | UCL | SBOL and SBOL Visual, https://genestorian.org/ | -| Maren Philipps | University of Bonn; LIMES Institute | COMBINE Archive, Multicellular modeling, SBML, PE-TAB, PEtab, pyPESTO | -| Michael Blinov | Center for Cell Analysis and Modeling, UConn Health, Farmington, CT, USA | BioPAX, COMBINE Archive, Multicellular modeling, OMEX Metadata, SBGN, SBML, SED-ML, http://vcell.org; http://MolClustPy.github.io; http://www.ModelBricks.org/ | -| Natasa Miskov-Zivanov | University of Pittsburgh | BioPAX, COMBINE Archive, NeuroML, OMEX Metadata, SBGN, SBML, SBOL and SBOL Visual, SED-ML, BioRECIPE (melody-biorecipe.readthedocs.io); ACCORDION (melody-accordion.readthedocs.io); CLARINET (melody-clarinet.readthedocs.io) | -| Padraig Gleeson | UCL, London | CellML, Multicellular modeling, NeuroML, OMEX Metadata, SBML, SED-ML, Open Source Brain | -| Pedro Fontanarrosa | UCL | SBOL and SBOL Visual | -| Prashant Vaidyanathan | Oxford Biomedica | SBOL and SBOL Visual, SBOL focuses on standardizing biological data to support FAIR principles, enhancing data sharing and reuse in biology. If you're interested in learning more or contributing, let's connect! | -| Rahuman Sheriff | EMBL-EBI | COMBINE Archive, Multicellular modeling, NeuroML, OMEX Metadata, SBML, SED-ML, PE-TAB, FROG, Stochastic Reproducibility, BioModels | -| Robert Vickerstaff | UCL | NeuroML, SBML, SED-ML | -| Sarah Keating | UCL, London | NeuroML, SBML, SED-ML, FROG, CHIMERA | -| Sebastian Persson | University of Gothenburg | SBML, PE-TAB | -| Sotirios Panagiotou | Erasmus Medical Center, Rotterdam, NL | CellML, COMBINE Archive, Multicellular modeling, NeuroML, OMEX Metadata, SED-ML, VCell, EDEN neural simulator for NeuroML https://eden-simulator.org , BrainFrame for HPC in simulations https://neurocomputinglab.com/research-themes/brainframe/ | -| Stela Prins | UCL | Multicellular modeling, NeuroML, SBML, SED-ML, Metabolic modeling, COBRA | -| Subhasis Ray | Plaksha University, Alpha, Sector 101, IT City Rd, Sahibzada Ajit Singh Nagar, Punjab 140306 | CellML, NeuroML, SBML, SED-ML, Multiscale Object Oriented Simulation Environment (https://moose.ncbs.res.in) | -| Swathi Anil | Imperial College London, Bernstein Centre Freiburg | NeuroML, Large scale network modeling to study perturbation-induced connectivity changes in the brain: https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1011027 | -| T.J. Sego | University of Florida | Multicellular modeling, SBML, CompuCell3D, Tissue Forge | -| Xiaoming Hu | HITS gGmbH, Schloss-Wolfsbrunnenweg 35 69118 Heidelberg Germany | CellML, SBML, SED-ML, Fairdom (https://fair-dom.org/) and NFDI4Health (https://www.nfdi4health.de/en/) | -| Yan-Kay Ho | University of Cambridge | SBOL and SBOL Visual | -| Zainab Ashimiyu-Abdusalam | EMBL-EBI, CB10, 1SD, Hinxton near Cambridge | NeuroML, SBML | - - - -### Attendees - remote - -| Name | Organization | Interests | -| :--- | :--- | :--- | -| Bart Jardine | University of Washington | CellML, COMBINE Archive, Multicellular modeling, SBML, SED-ML, OpenVT (multicell AB modeling), SBML web related tools | -| Carissa Bleker | National Institute of Biology, Slovenia | COMBINE Archive, Multicellular modeling, SBGN, SBML, SED-ML, FROG, ELIXIR Systems Biology community | -| Chris Evelo | Maastricht University, The Netherlands | BioPAX, SBGN, SBML, WikiPathways, ELIXIR's task on PBPK modelling and SBML conversions for that | -| Francis Chemorion | University of Pompeu Fabra, InSilicoTrials Technologies | BioPAX, CellML, COMBINE Archive, Multicellular modeling, NeuroML, OMEX Metadata, SBGN, SBML, SBOL and SBOL Visual, SED-ML, PE-TAB, FROG, I am a phd student researching the management of clinical, biological and simulated data for uniform simulation workflows in the Disc4All project https://disc4all.upf.edu | -| Gaoxiang(Gavin) Zhou | University of Pittsburgh, 4200 Fifth Ave, Pittsburgh PA 15260 | BioPAX, CellML, COMBINE Archive, SBML, SBOL and SBOL Visual, PE-TAB, Dish2.0 https://github.com/pitt-miskov-zivanov-lab/DiSH BioRECIPE https://github.com/pitt-miskov-zivanov-lab/BioRECIPE Model analysis in sensitivity etc | -| Haomiao Luo | University of Pittsburgh | BioRECIPE, CAR T cell, DiSH, BioRECIPE, http://www.nmzlab.pitt.edu | -| Herbert Sauro | University of Washington, Seattle, USA | COMBINE Archive, Multicellular modeling, OMEX Metadata, SBML, SED-ML | -| Ilya Kiselev | Biosoft.ru | CellML, COMBINE Archive, Multicellular modeling, SBGN, SBML, SED-ML, BioUML platform | -| Jacob Beal | BBN | SBOL and SBOL Visual | -| James Glazier | Indiana University, Bloomington, IN 47408 USA | COMBINE Archive, Multicellular modeling, SBML, SED-ML, OpenVT (Building communities for multicell modeling), CompuCell3D multicell modeling framework (www.compucell3d.org) | -| John Hancock | University of Ljubljana | COMBINE Archive, SBML, SED-ML, FROG, ELIXIR Systems Biology Community | -| Leonie Lorenz | EMBL-EBI | SBML, SED-ML, PE-TAB, Pathogen transmission and evolution models | -| Lokesh V | Indian Institute of Technology, Bombay | SBML, FROG, I generate high quality genome scale metabolic models for industrial microorganisms. I understand the basic science of the metabolism using models and provide insilico predictions for engineering applications. | -| Luisa Zapata Saldarriaga | Universidad de Antioquia | BioPAX, CellML, COMBINE Archive, Multicellular modeling, NeuroML, OMEX Metadata, SBGN, SBML, SBOL and SBOL Visual, SED-ML, PE-TAB, FROG | -| Lutz Brusch | Technische Universität Dresden, Dresden, Germany | COMBINE Archive, Multicellular modeling, SBML, PE-TAB, MorpheusML (https://morpheus.gitlab.io/model/published-models/), SBML-Spatial, FAIRSPACE, https://www.MultiCellML.org | -| Matthias König | Humboldt-University Berlin, Faculty of Life Science, Institute for Theoretical Biology, Berlin, Germany | COMBINE Archive, Multicellular modeling, OMEX Metadata, SBGN, SBML, SED-ML, PE-TAB, FROG | -| Nguyen Tung | EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK | BioPAX, CellML, COMBINE Archive, OMEX Metadata, SBGN, SBML, SED-ML, PE-TAB, FROG, BioModels: https://www.ebi.ac.uk/biomodels/ | -| Nicholas Owen | UCL | Multicellular modeling, SBML, SBOL and SBOL Visual, Data Stewardship at UCL | -| Paola Dr Di Maio | IGDORE | BioPAX, CellML, COMBINE Archive, Multicellular modeling, NeuroML, SED-ML, Model Cards ML, Neuroscience Model Cards | -| Qi Wu | HITS | | -| Randy Heiland | Indiana University, Bloomington, IN USA | CellML, Multicellular modeling, SED-ML, PhysiCell, CompuCell3D | -| Thomas Gorochowski | University of Bristol | SBOL and SBOL Visual | -| Veronica Henao | Universidad de Antioquia | COMBINE Archive, NeuroML, https://www.canva.com/design/DAFmX5dbOQA/5y0xNdtqzE7RmHXdCERZ3w/view?website#4 | - - - -Last updated 4 April 2024 +Interested in sponsoring our meeting? Please contact Luiz Ladeira for details. diff --git a/content/authors/HARMONY-2025/Backup_index.md b/content/authors/HARMONY-2025/Backup_index.md new file mode 100644 index 00000000..6402075a --- /dev/null +++ b/content/authors/HARMONY-2025/Backup_index.md @@ -0,0 +1,152 @@ +--- +title: HARMONY 2025 + +# Is this the primary user of the site? +superuser: false + +conf_date: 15-18 April, 2025 (Tuesday to Friday) + +conf_location: KU Leuven, Leuven, Belgium + +important_dates: +- name: Breakouts and tutorials submission deadline + date: February 16, 2025 +- name: Notification of acceptance for breakout and tutorials + date: March 03, 2025 +- name: Lightning talk and poster submission deadline + date: February 23, 2025 +- name: Notification of acceptance for lightning talks and posters + date: March 14, 2025 +- name: Registration deadline + date: March 21, 2025 +#- name: Travel support applications NOW CLOSED +# date: +#- name: Notification of travel support awards +# date: 21 February, 2024 + +important_links: +- name: Agenda + link: TBA +- name: Registration + link: https://forms.gle/BHRkSwZVii9dqnWd8 +- name: Break-outs and tutorials submission + link: https://forms.gle/TJzaMwLp7Q67RCwD6 +- name: Lightning talks and poster submission + link: https://forms.gle/o8P3zvfdaEoLKUao8 +#- + +information: +- name: Registration + description: Registration for the meeting is free. Please register at the link above as soon as possible. This will help us plan the schedule and match your interests to the timing of the breakouts, etc. Note, only registered attendees will be sent information related to the meeting. + link: https://forms.gle/BHRkSwZVii9dqnWd8 +- name: Call for Breakout Sessions and Tutorials + description: All attendees can suggest breakout sessions for hacking and/or detailed discussions of certain aspects of one or several of the COMBINE standard(s), metadata and semantic annotations (format-specific or overarching), application and implementations of the COMBINE standards, or any other topic relevant for the COMBINE community. The topics for those breakout sessions, and the time slots which would suit their communities can be submitted via the link above. Note, breakout session organizers will be responsible for creating and hosting their own online sessions, if required. + link: https://forms.gle/TJzaMwLp7Q67RCwD6 +- name: Call for Lightning Talks and Posters + description: Requests for a lightning talk (5 min max.) and/or poster can be submitted via the link above. Please use several forms if you want to submit abstracts on different topics. The submission deadline is outlined above. Talks will take place during the community session and posters will be displayed throughout the meeting. + link: https://forms.gle/o8P3zvfdaEoLKUao8 +#- name: Application for travel funding +# description: We have limited funding for travel bursaries or contributions towards accommodation. These will be given out to those who have a significant contribution to make to the HARMONY meeting. +# link: https://forms.gle/Ta72fwz5Bt2zb4YKA + +Topics of Interest: +- Data exchange, pipelines and model standards for systems and synthetic biology +- Visualization and graphical notation standards for systems and synthetic biology +- Standards for sharing and analyzing biological pathway data +- Standards for computational biological models and modelling support +- Metadata description and model annotation in COMBINE standard formats +- Implementation of COMBINE standards in tools, databases and other resources +- Integrated model and data management for systems and synthetic biology +- Standardization of Artificial Intelligence approaches in biological modelling +- Emerging standardization needs and multicellular modeling +- Community aspects of COMBINE + +# Organizational groups that you belong to (for People widget) +# Set this to `[]` or comment out if you are not using People widget. +user_groups: +- Events + +--- + +demo +
+ +The "**Computational Modeling in Biology**" Network (**COMBINE**) is an initiative to coordinate the development of the various community standards and formats in systems biology, synthetic biology and related fields. HARMONY is a codefest-type meeting, with a focus on development of the standards, interoperability and infrastructure. There are generally not many general discussions or oral presentations during HARMONY; instead, the time is devoted to allowing hands-on hacking and interaction between people focused on practical development of software and standards. + +HARMONY 2025 will be held at **KU Leuven** + +Local organizers are Liesbet Geris, Luiz Ladeira, and Bernard Staumont. + +

Workshop Location

+ +HARMONY 2025 will be held at **KU Leuven** - Katholieke Universiteit Leuven +Ghb - Onderwijs en Navorsing 2 +ON2 Herestraat 49 +3000 Leuven - Belgium +Building number: 402-18 + + + + +

Schedule

+ +The schedule will be available here. + +

Arrival and Transportation

+ +From Brussels-Zaventem Airport (BRU) you can take a train at the airport station to Leuven Central Station and then a bus at the bus station in front of the train station. The R90 should take around 14min to arrive at the Leuven Gasthuisberg Campus stop, just in front of the venue. + +From Brussels South-Charleroi Airport (CRL) you can take a bus, taxi or shuttle to Charleroi Central train station and take a train to Leuven from there. Shuttles to Midi (Zuid) station in Brussels and then a train to Leuven from there is also an option. + +Leuven is a very cyclable city. If you come by train or car you can bring your bike and enjoy the beautiful city! + +

Sister Meetings

+ +**9th Disease Maps Community Meeting - DMCM2025** + +Simultaneously from 15th to 17th April 2025 at the same venue. + +The 2025 edition of the Disease Maps Community Meeting is set to take place in Leuven, Belgium. This annual gathering brings together the researchers, clinicians, and domain experts involved in mapping and modelling disease mechanisms. The meeting provides a forum for exchanging best practices, sharing information, and developing tools to advance the use of systems medicine in translational medicine projects and decision making support. Building on the success of previous editions in locations like Belval, Maastricht, Sevilla, and Paris, the 2025 meeting in Leuven is expected to attract a diverse group of participants dedicated to furthering the understanding and application of disease maps in research and healthcare. + +The DMCM2025 will be held simultaneously with HARMONY 2025, in the same venue. This is expected to enhance interaction between the COMBINE and the Disease Maps communities, fostering collaboration opportunities and networking. Coffee breaks and meals will be shared between both meetings. + +More information can be found here: [DMCM2025](https://disease-maps.io/DMCM2025/). + +To have access to the DMCM talks, registrations should be done separately. + +**byteMAL'25** + +Monday 14th April 2025 + +ByteMAL is a conference created by and for early-career researchers in the fields of bioinformatics and systems biomedicine and aims to provide a networking platform for knowledge and expertise exchange across borders. Aiming to vitalize communication amongst researchers from The Netherlands, Belgium, and Germany, ByteMAL has been hosted alternately by the +Universities of Maastricht, Aachen, and Liege and for the first time it comes to Leuven! More information will be announced soon. + + +

Accommodations and meals

+ +[Hotel Mille Colonnes](https://hotelmillecolonnes.be/fr/) +Martelarenplein 5, 3000 Leuven, Belgium +In front of the train station, easy access to the bus station. +Distance to the conference venue: 14 min by bus, 14 min by bike, 45 min walking. + +[ibis Leuven Centrum](https://ibis.accor.com/en/destination/city/hotels-leuven-v2267.html) +Brusselsestraat 52, 3000 Leuven, Belgium +At the core of the city center, easy access to bus stops. +Distance to the conference venue: 13 min by bus. 9 min by bike. 28 min walking. + +Other accommodations options can be found on [Booking.com](https://booking.com/) and [Airbnb](https://airbnb.com/) (specially if you want to stay closer to the venue). + +Tea and coffee will be freely available throughout the meeting. In view of the number of people using the building, it may be advisable to bring your own mug! + +A sandwich lunch will also be provided - please make sure you give us the correct information as to which days you will be in attendance and any dietary requirements when you fill in the registration form. + +

Power outlet

+ +demo + +[E-type](https://www.netio-products.com/en/glossary/type-e-fr-electrical-socketelectrical-plug#:~:text=This%20electrical%20socket%20is%20common,socket%20has%20a%20round%20recess.) plugs are used in Belgium. + +

Support

+ +Interested in sponsoring our meeting? Please contact Luiz Ladeira for details. diff --git a/content/authors/HARMONY-2025/Backup_index_20241214.md b/content/authors/HARMONY-2025/Backup_index_20241214.md new file mode 100644 index 00000000..2f78cee4 --- /dev/null +++ b/content/authors/HARMONY-2025/Backup_index_20241214.md @@ -0,0 +1,96 @@ +--- +title: HARMONY 2025 + +# Is this the primary user of the site? +superuser: false + +conf_date: 15-18 April, 2025 + +conf_location: KU Leuven, Leuven, Belgium + +important_dates: +- name: Breakouts and tutorials submission deadline + date: TBA +- name: Notification of acceptance for breakout and tutorials + date: TBA +- name: Lightning talk and poster submission deadline + date: TBA +- name: Notification of acceptance for lightning talks and posters + date: TBA +#- name: Travel support applications NOW CLOSED +# date: +#- name: Notification of travel support awards +# date: 21 February, 2024 + +important_links: +#- name: Agenda +# link: +#- name: Registration +# link: https://forms.gle/ccGUNm8P3LcWkifG8 +#- +#- +#- + +information: +#- name: Registration +# description: Registration for the meeting is free. Please register at the link above as soon as possible. This will help us plan the schedule and match your interests to the timing of the breakouts, etc. Note, only registered attendees will be sent information related to the meeting. +# link: https://forms.gle/ccGUNm8P3LcWkifG8 +#- name: Call for Breakout Sessions and Tutorials +# description: All attendees can suggest breakout sessions for hacking and/or detailed discussions of certain aspects of one or several of the COMBINE standard(s), metadata and semantic annotations (format-specific or overarching), application and implementations of the COMBINE standards, or any other topic relevant for the COMBINE community. The topics for those breakout sessions, and the time slots which would suit their communities can be submitted via the link above. Note, breakout session organisers will be responsible for creating and hosting their own online sessions, if required. +# link: https://forms.gle/yWn4Fqetj3pkGF3q8 +#- name: Call for Lightning Talks and Posters +# description: Requests for a lightning talk (5 min max.) and/or poster can be submitted via the link above. Please use several forms if you want to submit abstracts on different topics. The submission deadline is outlined above. Talks will take place during the community session and posters will be displayed throughout the meeting. +# link: https://forms.gle/eu8S3eUeS1AoAwwU6 +#- name: Application for travel funding +# description: We have limited funding for travel bursaries or contributions towards accommodation. These will be given out to those who have a significant contribution to make to the HARMONY meeting. +# link: https://forms.gle/Ta72fwz5Bt2zb4YKA + +topics: +- Data exchange, pipelines and model standards for systems and synthetic biology +- Visualization and graphical notation standards for systems and synthetic biology +- Standards for sharing and analysing biological pathway data +- Standards for computational biological models and modelling support +- Metadata description and model annotation in COMBINE standard formats +- Implementation of COMBINE standards in tools, databases and other resources +- Integrated model and data management for systems and synthetic biology +- Standardization of Artificial Intelligence approaches in biological modelling +- Emerging standardization needs and multicellular modeling +- Community aspects of COMBINE + +# Organizational groups that you belong to (for People widget) +# Set this to `[]` or comment out if you are not using People widget. +user_groups: +- Events + +--- + +demo +
+ +The "**Computational Modeling in Biology**" Network (**COMBINE**) is an initiative to coordinate the development of the various community standards and formats in systems biology, synthetic biology and related fields. HARMONY is a codefest-type meeting, with a focus on development of the standards, interoperability and infrastructure. There are generally not many general discussions or oral presentations during HARMONY; instead, the time is devoted to allowing hands-on hacking and interaction between people focused on practical development of software and standards. + +HARMONY 2025 will be held at **KU Leuven** + +Local organizers are Liesbet Geris, Luiz Ladeira, and Bernard Staumont. + +

Workshop Location

+ +HARMONY 2025 will be held at .. + +

Schedule

+ +The schedule will be available here. + +

Arrival and Transportation

+ +Information to come. + +

Accommodations and meals

+ +

Power outlet

+ +

Support

+