Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

default values of "class: File" or "class: Directory" need persisting #144

Open
mr-c opened this issue Dec 10, 2021 · 1 comment
Open

default values of "class: File" or "class: Directory" need persisting #144

mr-c opened this issue Dec 10, 2021 · 1 comment
Assignees
@mvdbeek

Comments

@mr-c
Copy link
Member

mr-c commented Dec 10, 2021 •
edited
Loading

and their location fields updated with a Galaxy URI

can be discovered via cwltool --print-deps ~/common-workflow-language/v1.0/v1.0/count-lines11-extra-step-wf-noET.cwl or directly via cwltool.main.find_deps (see also cwltool.main.printdeps)
@mr-c
Copy link
Member Author

mr-c commented Dec 10, 2021

This is how Arvados does this https://github.com/arvados/arvados/blob/main/sdk/cwl/arvados_cwl/runner.py#L241

Probably could refactor that and we could pull it into cwltool with a callback for uploading

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@mvdbeek mvdbeek

Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@mr-c @mvdbeek