Bad No-Metric Error

[gidden]

This is non intuitive

$ cymetric cyclus.sqlite -e 'print(Foo[:])'
/home/gidden/.local/lib/python2.7/site-packages/cymetric/metrics.py:10: QAWarning: pyne.data is not yet QA compliant.
  from pyne import data
/home/gidden/.local/lib/python2.7/site-packages/cymetric/metrics.py:11: QAWarning: pyne.material is not yet QA compliant.
  import pyne.enrichment as enr
/home/gidden/.local/lib/python2.7/site-packages/cymetric/metrics.py:11: QAWarning: pyne.enrichment is not yet QA compliant.
  import pyne.enrichment as enr
Traceback (most recent call last):
  File "/home/gidden/.local/bin/cymetric", line 4, in <module>
    main()
  File "/home/gidden/.local/lib/python2.7/site-packages/cymetric/main.py", line 36, in main
    exec_code(ns.exec_code, db, write=ns.write)
  File "/home/gidden/.local/lib/python2.7/site-packages/cymetric/execution.py", line 217, in exec_code
    exec(code, glb, loc)
  File "<string>", line 1, in <module>
  File "/home/gidden/.local/lib/python2.7/site-packages/cymetric/execution.py", line 38, in __getitem__
    raise TypeError('ColumnProxy object {0!r} cannot be indexed'.format(self.name))
TypeError: ColumnProxy object 'Foo' cannot be indexed

Perhaps some logic could be added to catch a bad metric and print something more graceful.

[opotowsky]

So I think I should just change this (line 36, cymetric/execution.py):

def __getitem__(self, *args, **kwargs):
    """Stub function that prevents ColumnProxies from being indexed."""
    raise TypeError('ColumnProxy object {0!r} cannot be indexed'.format(self.name))

to say something else? I'm not sure what. "cannot be found"?

[gidden]

there is probably somewhere higher up that tries to do something like
evaluator[metric] that you could wrap a try/except clause around

On Wed, May 6, 2015 at 4:49 PM, opotowsky [email protected] wrote:

So I think I should just change this (line 36, cymetric/execution.py):

def getitem(self, _args, *_kwargs):
"""Stub function that prevents ColumnProxies from being indexed."""
raise TypeError('ColumnProxy object {0!r} cannot be indexed'.format(self.name))

to say something else? I'm not sure what. "cannot be found"?

—
Reply to this email directly or view it on GitHub
#60 (comment).

Matthew Gidden, Ph.D.
Postdoctoral Associate, Nuclear Engineering
The University of Wisconsin -- Madison
Ph. 225.892.3192

[opotowsky]

So in evaluator.py there is:

 42    def get_metric(self, metric):
 43         """Checks if metric is already in the registry; adds it if not."""
 44         if metric not in self.metrics:
 45             self.metrics[metric] = METRIC_REGISTRY[metric](self.db)
 46         return self.metrics[metric]
 47 
 48     def eval(self, metric, conds=None):
 49         """Evalutes a metric with the given conditions."""
 50         rawkey = (metric, conds if conds is None else frozenset(conds))
 51         if rawkey in self.rawcache:
 52             return self.rawcache[rawkey]
 53         m = self.get_metric(metric)
 54         series = []
 55         for dep in m.dependencies:
 56             d = self.eval(dep[0], conds=conds)
 57             s = None if d is None else raw_to_series(d, dep[1], dep[2])
 58             series.append(s)
 59         raw = m(series=series, conds=conds, known_tables=self.known_tables)
 60         if raw is None:
 61             return raw
 62         self.rawcache[rawkey] = raw
 63         # write back to db
 64         if (m.name in self.known_tables) or (not self.write):
 65             return raw
 66         rec = self.recorder
 67         rawd = raw.to_dict(outtype='list')
 68         for i in range(len(raw)):
 69             d = rec.new_datum(m.name)
 70             for field, dbtype, shape in m.schema:
 71                 fname = m.schema.byte_names[field]
 72                 val = rawd[str(field)][i]
 73                 d = d.add_val(fname, val, dbtype=dbtype, shape=shape)
 74             d.record()
 75         self.known_tables.add(m.name)
 76         return raw

Should I do the try/except clause around line 45?

[gidden]

The short answer is: you can try it and find out using the same example in
the issue =)
The perhaps slightly longer answer is: I don't know and would have to dig
myself because I don't intimately know the code base =/

On Wed, May 6, 2015 at 5:30 PM, opotowsky [email protected] wrote:

So in evaluator.py there is:

42 def get_metric(self, metric):
43 """Checks if metric is already in the registry; adds it if not."""
44 if metric not in self.metrics:
45 self.metrics[metric] = METRIC_REGISTRYmetric
46 return self.metrics[metric]
47
48 def eval(self, metric, conds=None):
49 """Evalutes a metric with the given conditions."""
50 rawkey = (metric, conds if conds is None else frozenset(conds))
51 if rawkey in self.rawcache:
52 return self.rawcache[rawkey]
53 m = self.get_metric(metric)
54 series = []
55 for dep in m.dependencies:
56 d = self.eval(dep[0], conds=conds)
57 s = None if d is None else raw_to_series(d, dep[1], dep[2])
58 series.append(s)
59 raw = m(series=series, conds=conds, known_tables=self.known_tables)
60 if raw is None:
61 return raw
62 self.rawcache[rawkey] = raw
63 # write back to db
64 if (m.name in self.known_tables) or (not self.write):
65 return raw
66 rec = self.recorder
67 rawd = raw.to_dict(outtype='list')
68 for i in range(len(raw)):
69 d = rec.new_datum(m.name)
70 for field, dbtype, shape in m.schema:
71 fname = m.schema.byte_names[field]
72 val = rawd[str(field)][i]
73 d = d.add_val(fname, val, dbtype=dbtype, shape=shape)
74 d.record()
75 self.known_tables.add(m.name)
76 return raw

Should I do the try/except clause around line 45?

—
Reply to this email directly or view it on GitHub
#60 (comment).

Matthew Gidden, Ph.D.
Postdoctoral Associate, Nuclear Engineering
The University of Wisconsin -- Madison
Ph. 225.892.3192

[opotowsky]

Gotcha! Thanks. I'll try it out :-)

[opotowsky]

Tried a number of ways with no luck, moving to 1.5