diff --git a/.github/workflows/preview.yml b/.github/workflows/preview.yml
index 86237e678..b2dd8fdd7 100644
--- a/.github/workflows/preview.yml
+++ b/.github/workflows/preview.yml
@@ -11,7 +11,7 @@ on:
       - 'man/**'
       - 'pkgdown/**'
       - 'vignettes/**'
-      - '_quarto.yml'
+      - '_quarto*.yml'
       - '.github/workflows/preview.yml'
       - '.github/workflows/publish.yml'
       - '*.qmd'
@@ -58,12 +58,12 @@ jobs:
       - name: list files
         shell: bash
         run: |
-          echo "contents of _book:\n"
-          ls _book/
+          echo "contents of _site:\n"
+          ls _site/
           echo "contents of .:\n"
           ls .
       - name: Deploy PR Preview
         uses: rossjrw/pr-preview-action@main
         with:
-          source-dir: _book/
+          source-dir: _site/
 
diff --git a/.gitignore b/.gitignore
index 540f7f448..e22bb05e9 100644
--- a/.gitignore
+++ b/.gitignore
@@ -21,6 +21,9 @@ test.qmd
 *.tex
 /.quarto/
 /_book/
+/_site/
+/_slides/
+/_handouts/
 _freeze/
 *.pdf
 rsconnect
diff --git a/CONTRIBUTING.md b/CONTRIBUTING.qmd
similarity index 98%
rename from CONTRIBUTING.md
rename to CONTRIBUTING.qmd
index 2a9366de6..16fbd85e2 100644
--- a/CONTRIBUTING.md
+++ b/CONTRIBUTING.qmd
@@ -1,3 +1,9 @@
+---
+title: "Contributing to rme"
+format:
+  html: default
+---
+
 # Contributing to `rme`
 
 Contributions to these notes are very much appreciated; anything from
diff --git a/Intro-to-GLMs.qmd b/Intro-to-GLMs.qmd
index 0c53905e9..520a5e84c 100755
--- a/Intro-to-GLMs.qmd
+++ b/Intro-to-GLMs.qmd
@@ -1,3 +1,13 @@
+---
+title: "Introduction to GLMs"
+format:
+  html: default
+  revealjs:
+    output-file: Intro-to-GLMs-slides.html
+  pdf:
+    output-file: Intro-to-GLMs-handout.pdf
+---
+
 # Introduction
 
 ---
diff --git a/Linear-models-overview.qmd b/Linear-models-overview.qmd
index 3b4232b64..630ae1461 100644
--- a/Linear-models-overview.qmd
+++ b/Linear-models-overview.qmd
@@ -1,3 +1,13 @@
+---
+title: "Linear (Gaussian) Models"
+format:
+  html: default
+  revealjs:
+    output-file: Linear-models-overview-slides.html
+  pdf:
+    output-file: Linear-models-overview-handout.pdf
+---
+
 # Linear (Gaussian) Models
 
 ---
diff --git a/_def-base-cuhaz.qmd b/_def-base-cuhaz.qmd
index a9d5f8fad..e1c00c07f 100644
--- a/_def-base-cuhaz.qmd
+++ b/_def-base-cuhaz.qmd
@@ -7,7 +7,7 @@ The **baseline cumulative hazard**,
 **base cumulative hazard**,
 or **reference cumulative hazard**,
 denoted $H_0(t)$ or $\Lambda_0(t)$,
-is the cumulative hazard function (@def-cuhaz)
+is the [cumulative hazard function](intro-to-survival-analysis.html#def-cuhaz)
 for the subpopulation of individuals
 whose covariates are all equal to their reference levels:
 ::::
diff --git a/_quarto-handout.yml b/_quarto-handout.yml
index 0981d1803..6d809990a 100644
--- a/_quarto-handout.yml
+++ b/_quarto-handout.yml
@@ -1,5 +1,56 @@
+project:
+  output-dir: _handouts
+  render:
+    - "index.qmd"
+    - "Intro-to-GLMs.qmd"
+    - "glms.qmd"
+    - "Linear-models-overview.qmd"
+    - "logistic-regression.qmd"
+    - "count-regression.qmd"
+    - "intro-multilevel-models.qmd"
+    - "time-to-event-models.qmd"
+    - "intro-to-survival-analysis.qmd"
+    - "proportional-hazards-models.qmd"
+    - "parametric-survival-models.qmd"
+    - "top-ten-concepts.qmd"
+    - "appendices-are-prereqs.qmd"
+    - "math-prereqs.qmd"
+    - "probability.qmd"
+    - "estimation.qmd"
+    - "inference.qmd"
+    - "intro-MLEs.qmd"
+    - "intro-bayes.qmd"
+    - "common-mistakes.qmd"
+    - "notation.qmd"
+    - "intro-to-R.qmd"
+    - "midterm-formula-sheet.qmd"
+
+bibliography: references.bib
+
 format:
   pdf:
     geometry:
       - top=15mm
       - bottom=20mm
+    keep-md: false
+    keep-tex: false
+    toc: true
+    fig-pos: "H"
+    toc-title: Contents
+    df-print: tibble
+    links-as-notes: true
+    documentclass: article
+    colorlinks: true
+    number-sections: true
+    number-depth: 3
+
+execute:
+  warning: false
+  message: false
+  cache: false
+  freeze: auto
+
+knitr:
+  opts_chunk:
+    collapse: true
+    comment: "#>"
diff --git a/_quarto-preview.yml b/_quarto-preview.yml
deleted file mode 100644
index 14b3443dd..000000000
--- a/_quarto-preview.yml
+++ /dev/null
@@ -1,5 +0,0 @@
-format:
-  html:
-    include-in-header:
-      - text: |
-          <meta name="robots" content="noindex">
diff --git a/_quarto-revealjs.yml b/_quarto-revealjs.yml
index ae371bb44..328f7976a 100644
--- a/_quarto-revealjs.yml
+++ b/_quarto-revealjs.yml
@@ -1,19 +1,29 @@
 project:
   output-dir: _slides
   render:
-    - intro-to-GLMs.qmd
-    - intro-MLEs.qmd
-    - glms.qmd
-    - Linear-models-overview.qmd
-    - logistic-regression.qmd
-    - count-regression.qmd
-    - time-to-event-models.qmd
-    - intro-to-survival-analysis.qmd
-    - proportional-hazards-models.qmd
-    - parametric-survival-models.qmd
-    - probability.qmd
-    - estimation.qmd
-    - intro-MLEs.qmd
+    - "index.qmd"
+    - "Intro-to-GLMs.qmd"
+    - "glms.qmd"
+    - "Linear-models-overview.qmd"
+    - "logistic-regression.qmd"
+    - "count-regression.qmd"
+    - "intro-multilevel-models.qmd"
+    - "time-to-event-models.qmd"
+    - "intro-to-survival-analysis.qmd"
+    - "proportional-hazards-models.qmd"
+    - "parametric-survival-models.qmd"
+    - "top-ten-concepts.qmd"
+    - "appendices-are-prereqs.qmd"
+    - "math-prereqs.qmd"
+    - "probability.qmd"
+    - "estimation.qmd"
+    - "inference.qmd"
+    - "intro-MLEs.qmd"
+    - "intro-bayes.qmd"
+    - "common-mistakes.qmd"
+    - "notation.qmd"
+    - "intro-to-R.qmd"
+    - "midterm-formula-sheet.qmd"
 
 format:
   revealjs:
diff --git a/_quarto-website.yml b/_quarto-website.yml
new file mode 100644
index 000000000..1f8ec4265
--- /dev/null
+++ b/_quarto-website.yml
@@ -0,0 +1,169 @@
+project:
+  type: website
+  output-dir: _site
+  render:
+    # Only render the files that were in the original book
+    - index.qmd
+    - Intro-to-GLMs.qmd
+    - glms.qmd
+    - Linear-models-overview.qmd
+    - logistic-regression.qmd
+    - count-regression.qmd
+    - intro-multilevel-models.qmd
+    - time-to-event-models.qmd
+    - intro-to-survival-analysis.qmd
+    - proportional-hazards-models.qmd
+    - parametric-survival-models.qmd
+    - top-ten-concepts.qmd
+    - appendices-are-prereqs.qmd
+    - math-prereqs.qmd
+    - probability.qmd
+    - estimation.qmd
+    - inference.qmd
+    - intro-MLEs.qmd
+    - intro-bayes.qmd
+    - common-mistakes.qmd
+    - notation.qmd
+    - intro-to-R.qmd
+    - CONTRIBUTING.qmd
+    - midterm-formula-sheet.qmd
+
+website:
+  title: "Regression Models for Epidemiology"
+  site-url: https://d-morrison.github.io/rme/
+  description: "Lecture notes for Epidemiology 204: Quantitative Epidemiology III (Statistical Models)"
+  page-footer:
+    left:
+      - text: "Copyright 2024-2026, Douglas Ezra Morrison"
+  back-to-top-navigation: true
+  page-navigation: true
+  reader-mode: true
+  repo-url: https://github.com/d-morrison/rme
+  repo-actions: [edit, issue, source]
+  google-analytics: "G-VS314RJ2KP"
+  navbar:
+    left:
+      - text: "Home"
+        href: index.qmd
+      - text: "Chapters"
+        menu:
+          - text: "Introduction to GLMs"
+            href: Intro-to-GLMs.qmd
+          - text: "---"
+          - text: "Generalized Linear Models"
+            href: glms.qmd
+          - text: "Linear Models Overview"
+            href: Linear-models-overview.qmd
+          - text: "Logistic Regression"
+            href: logistic-regression.qmd
+          - text: "Count Regression"
+            href: count-regression.qmd
+          - text: "Multilevel Models"
+            href: intro-multilevel-models.qmd
+          - text: "---"
+          - text: "Time to Event Models"
+            href: time-to-event-models.qmd
+          - text: "Introduction to Survival Analysis"
+            href: intro-to-survival-analysis.qmd
+          - text: "Proportional Hazards Models"
+            href: proportional-hazards-models.qmd
+          - text: "Parametric Survival Models"
+            href: parametric-survival-models.qmd
+          - text: "---"
+          - text: "Top Ten Concepts"
+            href: top-ten-concepts.qmd
+      - text: "Appendices"
+        menu:
+          - text: "Math Prerequisites"
+            href: math-prereqs.qmd
+          - text: "Probability"
+            href: probability.qmd
+          - text: "Estimation"
+            href: estimation.qmd
+          - text: "Inference"
+            href: inference.qmd
+          - text: "Introduction to MLEs"
+            href: intro-MLEs.qmd
+          - text: "Introduction to Bayesian Statistics"
+            href: intro-bayes.qmd
+          - text: "Common Mistakes"
+            href: common-mistakes.qmd
+          - text: "Notation"
+            href: notation.qmd
+          - text: "Introduction to R"
+            href: intro-to-R.qmd
+          - text: "Midterm Formula Sheet"
+            href: midterm-formula-sheet.qmd
+
+bibliography: references.bib
+
+format:
+  html:
+    theme:
+      light: cosmo
+      dark: darkly
+    toc: true
+    toc-location: right
+    toc-depth: 3
+    code-fold: true
+    code-tools: true
+    code-link: true
+    code-summary: "Show R code"
+    css: custom.scss
+    highlight-style: pygments
+    lightbox: true
+    link-external-icon: true
+    embed-resources: false
+    fig-cap-location: top
+    html-math-method: mathjax
+    number-sections: true
+    number-depth: 3
+    df-print: paged
+    date: last-modified
+    date-format: "[Last modified:] YYYY-MM-DD: H:mm:ss (z)"
+    subject: "Epidemiology 204"
+  revealjs:
+    lightbox: true
+    theme: dark
+    embed-resources: false
+    fig-cap-location: top
+    html-math-method: mathjax
+    smaller: true
+    number-sections: true
+    progress: true
+    incremental: false
+    df-print: paged
+    number-depth: 2
+    slide-number: true
+    shift-heading-level-by: -1
+    slide-level: 2
+    scrollable: true
+    echo: true
+    margin: 0.0
+    code-fold: true
+    code-link: true
+    code-summary: "[R code]"
+    auto-stretch: true
+    fig-height: 5
+    fig-width: 7
+  pdf:
+    geometry:
+      - top=15mm
+      - bottom=20mm
+    keep-md: false
+    keep-tex: false
+    toc: true
+    fig-pos: "H"
+    toc-title: Contents
+    df-print: tibble
+    links-as-notes: true
+    documentclass: article
+    colorlinks: true
+    number-sections: true
+    number-depth: 3
+
+comments:
+  hypothesis:
+    theme: clean
+    openSidebar: false
+    enableExperimentalNewNoteButton: true
diff --git a/_quarto.yml b/_quarto.yml
index f9669be7c..4d819ae06 100644
--- a/_quarto.yml
+++ b/_quarto.yml
@@ -1,9 +1,22 @@
 profile:
-  default: book
+  default: website
+
 editor_options:
   chunk_output_type: console
+
 editor:
   markdown:
     wrap: 72
 
-bibliography: references.bib
+execute:
+  warning: false
+  message: false
+  cache: false
+  freeze: auto
+
+knitr:
+  opts_chunk:
+    collapse: true
+    comment: "#>"
+    R.options:
+      knitr.graphics.auto_pdf: true
diff --git a/_sec-pdf.qmd b/_sec-pdf.qmd
index f6e857d66..4cc9a0be5 100644
--- a/_sec-pdf.qmd
+++ b/_sec-pdf.qmd
@@ -1,6 +1,6 @@
 
 For a time-to-event variable $T$ with a continuous distribution, the
-**probability density function** is defined as usual (see @sec-prob-dens).
+**probability density function** is defined as usual (see [probability density function](probability.html#sec-prob-dens)).
 
 ::: notes
 In most time-to-event models, this density is assumed to be 0 for all $t<0$;
diff --git a/_sec-surv-conditional-hazards.qmd b/_sec-surv-conditional-hazards.qmd
index ab67c503c..0d3e7e755 100644
--- a/_sec-surv-conditional-hazards.qmd
+++ b/_sec-surv-conditional-hazards.qmd
@@ -69,7 +69,7 @@ Now, let's define ***how*** the hazard function depends on covariates.
 We typically use a log link to model the relationship between
 the hazard function, $\haz(t|\vx)$, and
 the linear component, $\eta(t|\vx)$,
-as we did for Poisson models in @sec-count-reg;
+as we did for Poisson models in [models for count outcomes](count-regression.html#sec-count-reg);
 that is:
 
 :::
diff --git a/_sec_OR_inference.qmd b/_sec_OR_inference.qmd
index 570ef84bb..cd082a36f 100644
--- a/_sec_OR_inference.qmd
+++ b/_sec_OR_inference.qmd
@@ -138,7 +138,7 @@ $${#eq-est-se-diff-logodds}
 Note: on the RHS, we have plugged in $\hat{\Sigma}$, 
 our estimate of $\Sigma$.
 
-Compare this result with @sec-se-fitted.
+Compare this result with [confidence intervals](Linear-models-overview.html#sec-se-fitted).
 
 :::
 
diff --git a/_sec_mle_no_log.qmd b/_sec_mle_no_log.qmd
index 306905a7e..a21cd0970 100644
--- a/_sec_mle_no_log.qmd
+++ b/_sec_mle_no_log.qmd
@@ -15,4 +15,4 @@ The derivative of the likelihood of independent data is
 the derivative of a product.
 To evaluate this derivative,
 we will have to perform a massive application of
-the product rule (@thm-product-rule).
+the [product rule](math-prereqs.html#thm-product-rule).
diff --git a/_thm-diff-loghaz.qmd b/_thm-diff-loghaz.qmd
index 43d42ae1a..8453171b0 100644
--- a/_thm-diff-loghaz.qmd
+++ b/_thm-diff-loghaz.qmd
@@ -13,7 +13,7 @@ $$\diffloghaz(t|\vx : \vxs)= \logf{\theta(t| \vx : \vxs)}$$
 
 ::: proof
 
-Using @def-hazard-ratio:
+Using the [hazard ratio definition](intro-to-survival-analysis.html#def-hazard-ratio):
 
 $$
 \ba
diff --git a/appendices-are-prereqs.qmd b/appendices-are-prereqs.qmd
index ca9f9cb43..9ad240006 100644
--- a/appendices-are-prereqs.qmd
+++ b/appendices-are-prereqs.qmd
@@ -1,3 +1,13 @@
+---
+title: "Overview of Appendices"
+format:
+  html: default
+  revealjs:
+    output-file: appendices-are-prereqs-slides.html
+  pdf:
+    output-file: appendices-are-prereqs-handout.pdf
+---
+
 # Overview of Appendices
 
 These appendices contain information that I consider to be 
diff --git a/common-mistakes.qmd b/common-mistakes.qmd
index b873f8117..6cfbd5c04 100644
--- a/common-mistakes.qmd
+++ b/common-mistakes.qmd
@@ -1,3 +1,13 @@
+---
+title: "Common Mistakes"
+format:
+  html: default
+  revealjs:
+    output-file: common-mistakes-slides.html
+  pdf:
+    output-file: common-mistakes-handout.pdf
+---
+
 # Common Mistakes
 
 ---
diff --git a/count-regression.qmd b/count-regression.qmd
index c69369227..3e1ad28c0 100644
--- a/count-regression.qmd
+++ b/count-regression.qmd
@@ -1,5 +1,12 @@
 ---
+title: "Models for Count Outcomes"
 subtitle: "Poisson regression and variations"
+format:
+  html: default
+  revealjs:
+    output-file: count-regression-slides.html
+  pdf:
+    output-file: count-regression-handout.pdf
 ---
 
 # Models for Count Outcomes {#sec-count-reg}
diff --git a/estimation.qmd b/estimation.qmd
index 856779d1e..b1fbddb66 100644
--- a/estimation.qmd
+++ b/estimation.qmd
@@ -1,3 +1,13 @@
+---
+title: "Estimation"
+format:
+  html: default
+  revealjs:
+    output-file: estimation-slides.html
+  pdf:
+    output-file: estimation-handout.pdf
+---
+
 # Estimation
 
 ## Probabilistic models {.scrollable}
diff --git a/glms.qmd b/glms.qmd
index c9763cb2f..87ba74541 100644
--- a/glms.qmd
+++ b/glms.qmd
@@ -1,3 +1,13 @@
+---
+title: "Generalized Linear Models"
+format:
+  html: default
+  revealjs:
+    output-file: glms-slides.html
+  pdf:
+    output-file: glms-handout.pdf
+---
+
 # Generalized Linear Models
 
 ---
diff --git a/index.qmd b/index.qmd
index 51816dfad..ffc898d40 100644
--- a/index.qmd
+++ b/index.qmd
@@ -1,3 +1,13 @@
+---
+title: "Regression Models for Epidemiology"
+format:
+  html: default
+  revealjs:
+    output-file: index-slides.html
+  pdf:
+    output-file: index-handout.pdf
+---
+
 # Preface {.unnumbered}
 
 This web-book is derived from my lecture slides for Epidemiology 204: "Quantitative Epidemiology III: Statistical Models", at UC Davis.
@@ -25,45 +35,59 @@ Please see also the list of contributors on GitHub: <https://github.com/d-morris
 
 ## Using these lecture notes {.unnumbered}
 
-These lecture notes are available online at <https://d-morrison.github.io/rme/>.
-The online notes are searchable and are currently being iteratively updated^[see the source file repository for recent changes: <https://github.com/d-morrison/rme>].
-A pdf version of the notes is also downloadable from <https://d-morrison.github.io/rme/Regression-Models-for-Epidemiology.pdf>,
-and the source files are available at <https://github.com/d-morrison/rme>.
+This website provides lecture notes for Epidemiology 204: Quantitative Epidemiology III (Statistical Models) at UC Davis.
+
+The notes are available online at <https://d-morrison.github.io/rme/> and are searchable and continuously updated^[see the source file repository for recent changes: <https://github.com/d-morrison/rme>].
 
+### Multiple Format Options {.unnumbered}
 
-### Compiling chapters as lecture slide decks {.unnumbered}
+Each chapter is available in three formats:
 
-Each chapter's source file can also be compiled as a lecture slide deck, using the 
-[`_quarto-revealjs.yml`](https://github.com/d-morrison/rme/blob/main/_quarto-revealjs.yml) [Quarto profile](https://quarto.org/docs/projects/profiles.html) 
-included in the [git repository on Github](https://github.com/d-morrison/rme).
+1. **HTML (Website)**: Browse chapters online with navigation and search
+2. **RevealJS Slides**: Presentation slides for teaching (e.g., `logistic-regression-slides.html`)
+3. **PDF Handouts**: Printable documents for each chapter (e.g., `logistic-regression-handout.pdf`)
 
-For example, to compile [Chapter @sec-Bernoulli-models] as a slide deck:
+### Compiling chapters locally {.unnumbered}
 
-1) [install quarto](https://quarto.org/docs/get-started/)
+To compile chapters from source:
 
-2) clone the project repository from [Github](https://github.com/d-morrison/rme)
+1. [Install Quarto](https://quarto.org/docs/get-started/)
+
+2. Clone the repository:
+
+``` bash
+git clone --recurse-submodules https://github.com/d-morrison/rme.git
+cd rme
+```
 
-3) Install the project dependencies using `devtools`:
+3. Install R package dependencies:
 
 ``` r 
-library(devtools) # install from CRAN if needed
+library(devtools)
 devtools::install_deps()
 ```
 
-4) Render the chapter using the `revealjs` profile using the following terminal shell command:
+4. Render in your desired format:
 
+**HTML website:**
 ``` bash
-quarto render logistic-regression.qmd --profile=revealjs
+quarto render --profile=website
 ```
 
-You can also render all the chapters listed in the [`_quarto-revealjs.yml`](https://github.com/d-morrison/rme/blob/main/_quarto-revealjs.yml) 
-[Quarto profile](https://quarto.org/docs/projects/profiles.html)
-as slide decks simultaneously:
-
+**RevealJS slides:**
 ``` bash
+quarto render logistic-regression.qmd --profile=revealjs
+# Or render all slides:
 quarto render --profile=revealjs
 ```
 
+**PDF handouts:**
+``` bash
+quarto render logistic-regression.qmd --profile=handout
+# Or render all handouts:
+quarto render --profile=handout
+```
+
 ---
 
 ### Extracting LaTeX commands from the online version of the notes {.unnumbered}
diff --git a/inference.qmd b/inference.qmd
index 8037153c6..ad70fc382 100644
--- a/inference.qmd
+++ b/inference.qmd
@@ -1,3 +1,13 @@
+---
+title: "Statistical Inference"
+format:
+  html: default
+  revealjs:
+    output-file: inference-slides.html
+  pdf:
+    output-file: inference-handout.pdf
+---
+
 # Inference
 
 ---
@@ -16,8 +26,8 @@ based on the data (and our prior beliefs).
 
 There are two predominant paradigms for statistical inference:
 
-1. Bayesian inference (@sec-bayes)
-2. Frequentist inference (@sec-intro-MLEs)
+1. [Bayesian inference](intro-bayes.html#sec-bayes)
+2. [Frequentist inference](intro-MLEs.html#sec-intro-MLEs)
 
 ## Interpretation of Negative Findings
 
diff --git a/intro-MLEs.qmd b/intro-MLEs.qmd
index 92432d221..44a1576dc 100644
--- a/intro-MLEs.qmd
+++ b/intro-MLEs.qmd
@@ -1,3 +1,13 @@
+---
+title: "Introduction to Maximum Likelihood Inference"
+format:
+  html: default
+  revealjs:
+    output-file: intro-MLEs-slides.html
+  pdf:
+    output-file: intro-MLEs-handout.pdf
+---
+
 # Introduction to Maximum Likelihood Inference {#sec-intro-MLEs}
 
 ---
diff --git a/intro-bayes.qmd b/intro-bayes.qmd
index 287bbfe47..ec8d86900 100644
--- a/intro-bayes.qmd
+++ b/intro-bayes.qmd
@@ -1,3 +1,13 @@
+---
+title: "Introduction to Bayesian Inference"
+format:
+  html: default
+  revealjs:
+    output-file: intro-bayes-slides.html
+  pdf:
+    output-file: intro-bayes-handout.pdf
+---
+
 # Introduction to Bayesian inference {#sec-bayes}
 
 ---
diff --git a/intro-multilevel-models.qmd b/intro-multilevel-models.qmd
index cc1e48c59..d9e0b524c 100644
--- a/intro-multilevel-models.qmd
+++ b/intro-multilevel-models.qmd
@@ -1,3 +1,13 @@
+---
+title: "Introduction to Multi-level Models"
+format:
+  html: default
+  revealjs:
+    output-file: intro-multilevel-models-slides.html
+  pdf:
+    output-file: intro-multilevel-models-handout.pdf
+---
+
 # Introduction to multi-level models for correlated data
 
 
diff --git a/intro-to-R.qmd b/intro-to-R.qmd
index 13802123b..913372356 100644
--- a/intro-to-R.qmd
+++ b/intro-to-R.qmd
@@ -1,3 +1,13 @@
+---
+title: "Statistical Computing in R"
+format:
+  html: default
+  revealjs:
+    output-file: intro-to-R-slides.html
+  pdf:
+    output-file: intro-to-R-handout.pdf
+---
+
 # Statistical computing in R
 
 ## Online R learning resources
diff --git a/intro-to-survival-analysis.qmd b/intro-to-survival-analysis.qmd
index f5548ee0a..5dc22587a 100644
--- a/intro-to-survival-analysis.qmd
+++ b/intro-to-survival-analysis.qmd
@@ -1,3 +1,13 @@
+---
+title: "Introduction to Survival Analysis"
+format:
+  html: default
+  revealjs:
+    output-file: intro-to-survival-analysis-slides.html
+  pdf:
+    output-file: intro-to-survival-analysis-handout.pdf
+---
+
 # Introduction to Survival Analysis
 
 {{< include shared-config.qmd >}}
diff --git a/logistic-regression.qmd b/logistic-regression.qmd
index d08f05bc3..8d96036a2 100644
--- a/logistic-regression.qmd
+++ b/logistic-regression.qmd
@@ -1,5 +1,12 @@
 ---
+title: "Models for Binary Outcomes"
 subtitle: "Logistic regression and variations"
+format:
+  html: default
+  revealjs:
+    output-file: logistic-regression-slides.html
+  pdf:
+    output-file: logistic-regression-handout.pdf
 ---
 
 # Models for Binary Outcomes {#sec-Bernoulli-models}
diff --git a/math-prereqs.qmd b/math-prereqs.qmd
index 8586aa90a..150ae1712 100644
--- a/math-prereqs.qmd
+++ b/math-prereqs.qmd
@@ -1,3 +1,13 @@
+---
+title: "Mathematics Prerequisites"
+format:
+  html: default
+  revealjs:
+    output-file: math-prereqs-slides.html
+  pdf:
+    output-file: math-prereqs-handout.pdf
+---
+
 # Mathematics
 
 {{< include latex-macros/macros.qmd >}}
diff --git a/midterm-formula-sheet.qmd b/midterm-formula-sheet.qmd
index c53f0abe8..b656e3833 100644
--- a/midterm-formula-sheet.qmd
+++ b/midterm-formula-sheet.qmd
@@ -1,6 +1,11 @@
 ---
+title: "Midterm Formula Sheet"
 format: 
-  pdf: default
+  pdf: 
+    output-file: midterm-formula-sheet-handout.pdf
+  html: default
+  revealjs:
+    output-file: midterm-formula-sheet-slides.html
 ---
 
 ```{r, eval = FALSE, include = FALSE}
diff --git a/notation.qmd b/notation.qmd
index e790acce8..0b7a59d37 100644
--- a/notation.qmd
+++ b/notation.qmd
@@ -1,3 +1,13 @@
+---
+title: "Notation"
+format:
+  html: default
+  revealjs:
+    output-file: notation-slides.html
+  pdf:
+    output-file: notation-handout.pdf
+---
+
 # Notation {#sec-notation}
 
 {{< include latex-macros/macros.qmd >}}
diff --git a/parametric-survival-models.qmd b/parametric-survival-models.qmd
index d7c5a0a7f..7ce305d99 100644
--- a/parametric-survival-models.qmd
+++ b/parametric-survival-models.qmd
@@ -1,3 +1,13 @@
+---
+title: "Parametric Survival Models"
+format:
+  html: default
+  revealjs:
+    output-file: parametric-survival-models-slides.html
+  pdf:
+    output-file: parametric-survival-models-handout.pdf
+---
+
 # Parametric survival models
 
 ---
diff --git a/probability.qmd b/probability.qmd
index 31062a145..0dbfe35c1 100644
--- a/probability.qmd
+++ b/probability.qmd
@@ -1,3 +1,13 @@
+---
+title: "Probability"
+format:
+  html: default
+  revealjs:
+    output-file: probability-slides.html
+  pdf:
+    output-file: probability-handout.pdf
+---
+
 # Probability
 
 {{< include shared-config.qmd >}}
diff --git a/proportional-hazards-models.qmd b/proportional-hazards-models.qmd
index 64ab2f4ca..5e56fc1e2 100644
--- a/proportional-hazards-models.qmd
+++ b/proportional-hazards-models.qmd
@@ -1,3 +1,13 @@
+---
+title: "Proportional Hazards Models"
+format:
+  html: default
+  revealjs:
+    output-file: proportional-hazards-models-slides.html
+  pdf:
+    output-file: proportional-hazards-models-handout.pdf
+---
+
 # Proportional Hazards Models
 
 ---
diff --git a/time-to-event-models.qmd b/time-to-event-models.qmd
index 279f448bf..93b27d40c 100644
--- a/time-to-event-models.qmd
+++ b/time-to-event-models.qmd
@@ -1,3 +1,13 @@
+---
+title: "Time to Event Models"
+format:
+  html: default
+  revealjs:
+    output-file: time-to-event-models-slides.html
+  pdf:
+    output-file: time-to-event-models-handout.pdf
+---
+
 # Time to Event Models
 
 In many health sciences applications, binary outcomes are *incompletely observed*.
diff --git a/top-ten-concepts.qmd b/top-ten-concepts.qmd
index 8310f3ea1..f9563c88d 100644
--- a/top-ten-concepts.qmd
+++ b/top-ten-concepts.qmd
@@ -1,3 +1,13 @@
+---
+title: "Summary of Regression Modeling Concepts"
+format:
+  html: default
+  revealjs:
+    output-file: top-ten-concepts-slides.html
+  pdf:
+    output-file: top-ten-concepts-handout.pdf
+---
+
 # Summary of Regression Modeling Concepts
 
 ## We use different probability models for different data types