diff --git a/README.md b/README.md index 05317c5..18ac245 100644 --- a/README.md +++ b/README.md @@ -145,6 +145,7 @@ samtools|1.3.1|docker pull pgc-images.sbgenomics.com/d3b-bixu/samtools:1.3.1 samtools|1.6|docker pull pgc-images.sbgenomics.com/d3b-bixu/samtools:1.6 samtools|1.7-11-g041220d|docker pull pgc-images.sbgenomics.com/d3b-bixu/samtools:1.7-11-g041220d samtools|1.9|docker pull pgc-images.sbgenomics.com/d3b-bixu/samtools:1.9 +samtools|base|docker pull pgc-images.sbgenomics.com/d3b-bixu/samtools:base samtools|latest|docker pull pgc-images.sbgenomics.com/d3b-bixu/samtools:latest sanger|caveman-pindel|docker pull pgc-images.sbgenomics.com/d3b-bixu/sanger:caveman-pindel scdblfinder|1.8.0|docker pull pgc-images.sbgenomics.com/d3b-bixu/scdblfinder:1.8.0 diff --git a/samtools/base/Dockerfile b/samtools/base/Dockerfile new file mode 100644 index 0000000..040f116 --- /dev/null +++ b/samtools/base/Dockerfile @@ -0,0 +1,25 @@ +ARG PLATFORM=linux/amd64 +FROM --platform=${PLATFORM} ubuntu:24.04 + +LABEL maintainer="Miguel Brown " +LABEL description="Base software for samtools image" + +ENV DEBIAN_FRONTEND=noninteractive + +RUN apt update && apt install -y \ + autoconf \ + automake \ + make \ + gcc \ + perl \ + zlib1g-dev \ + libbz2-dev \ + liblzma-dev \ + libcurl4-gnutls-dev \ + libssl-dev \ + libncurses5-dev \ + libdeflate-dev \ + bzip2 \ + pigz \ + parallel \ + curl