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Unexpected keyword argument 'pdd_inches' #1314

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4 tasks done
yeeelwy opened this issue May 30, 2024 · 0 comments
Open
4 tasks done

Unexpected keyword argument 'pdd_inches' #1314

yeeelwy opened this issue May 30, 2024 · 0 comments

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@yeeelwy
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yeeelwy commented May 30, 2024

Welcome to deepTools GitHub repository! Before opening the issue please check
that the following requirements are met :

  • Search whether this issue (or a similar issue) has been solved before
    using the search tab above. Link the previous issue if appropriate below.

  • Paste your deepTools version (deeptools --version) and your python
    version (python --version) below.
    deeptools 3.4.3
    python 3.8.2

  • Paste the full deepTools command that produces the issue below
    (ignore if you simply spotted the issue in the code/documentation).
    plotHeatmap -m xx4_24.mat.gz
    -out xx4_24.png
    --sortUsing sum

  • Paste the output printed on screen from the command that produces the issue
    below (ignore if you simply spotted the issue in the code/documentation).
    Traceback (most recent call last):
    File "/hpc/packages/minerva-centos7/py_packages/3.8/bin/plotHeatmap", line 12, in
    main(args)
    File "/hpc/packages/minerva-centos7/py_packages/3.8/lib/python3.8/site-packages/deeptools/plotHeatmap.py", line 847, in main
    plotMatrix(hm,
    File "/hpc/packages/minerva-centos7/py_packages/3.8/lib/python3.8/site-packages/deeptools/plotHeatmap.py", line 743, in plotMatrix
    plt.savefig(outFileName, bbox_inches='tight', pdd_inches=0, dpi=dpi, format=image_format)
    File "/hpc/packages/minerva-centos7/python/3.8.2/lib/python3.8/site-packages/matplotlib/pyplot.py", line 954, in savefig
    res = fig.savefig(*args, **kwargs)
    File "/hpc/packages/minerva-centos7/python/3.8.2/lib/python3.8/site-packages/matplotlib/figure.py", line 3274, in savefig
    self.canvas.print_figure(fname, **kwargs)
    File "/hpc/packages/minerva-centos7/python/3.8.2/lib/python3.8/site-packages/matplotlib/backend_bases.py", line 2338, in print_figure
    result = print_method(
    File "/hpc/packages/minerva-centos7/python/3.8.2/lib/python3.8/site-packages/matplotlib/backend_bases.py", line 2204, in
    print_method = functools.wraps(meth)(lambda *args, **kwargs: meth(
    File "/hpc/packages/minerva-centos7/python/3.8.2/lib/python3.8/site-packages/matplotlib/_api/deprecation.py", line 385, in wrapper
    arguments = signature.bind(*inner_args, **inner_kwargs).arguments
    File "/hpc/packages/minerva-centos7/python/3.8.2/lib/python3.8/inspect.py", line 3025, in bind
    return self._bind(args, kwargs)
    File "/hpc/packages/minerva-centos7/python/3.8.2/lib/python3.8/inspect.py", line 3014, in _bind
    raise TypeError(
    TypeError: got an unexpected keyword argument 'pdd_inches'

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