Apply pre-commit

Author: bobleesj

README.rst

@@ -113,7 +113,7 @@ Support and Contribute
 
 `Diffpy user group <https://groups.google.com/g/diffpy-users>`_ is the discussion forum for general questions and discussions about the use of diffpy.nmf_mapping. Please join the diffpy.nmf_mapping users community by joining the Google group. The diffpy.nmf_mapping project welcomes your expertise and enthusiasm!
 
-If you see a bug or want to request a feature, please `report it as an issue <https://github.com/diffpy/diffpy.nmf_mapping/issues>`_ and/or `submit a fix as a PR <https://github.com/diffpy/diffpy.nmf_mapping/pulls>`_. You can also post it to the `Diffpy user group <https://groups.google.com/g/diffpy-users>`_. 
+If you see a bug or want to request a feature, please `report it as an issue <https://github.com/diffpy/diffpy.nmf_mapping/issues>`_ and/or `submit a fix as a PR <https://github.com/diffpy/diffpy.nmf_mapping/pulls>`_. You can also post it to the `Diffpy user group <https://groups.google.com/g/diffpy-users>`_.
 
 Feel free to fork the project and contribute. To install diffpy.nmf_mapping
 in a development mode, with its sources being directly used by Python

doc/examples/NMFBatching.ipynb

@@ -8,7 +8,7 @@
     "## Notebook Introduction\n",
     "This notebook takes the synthetic example datasets and batches it into four significantly different subsets. A threshold\n",
     "of 10 weight percent of any given phase is used to batch the data, meaning that if a phase either enters or leaves the\n",
-    "signal (with a threshold of 10 wight percent) the input data will be separated. The notebook then goes a step further\n",
+    "signal (with a threshold of 10 weight percent) the input data will be separated. The notebook then goes a step further\n",
     "by taking an exemplary INP topas file and editing it such that it will refine a number of basic parameters for a given\n",
     "batch of the data."
    ]

doc/source/license.rst

@@ -9,9 +9,9 @@ OPEN SOURCE LICENSE AGREEMENT
 =============================
 BSD 3-Clause License
 
-Copyright (c) 2024, The Trustees of Columbia University in 
+Copyright (c) 2024, The Trustees of Columbia University in
 the City of New York.
-All Rights Reserved. 
+All Rights Reserved.
 
 Redistribution and use in source and binary forms, with or without
 modification, are permitted provided that the following conditions are met:

requirements/conda.txt

@@ -4,4 +4,4 @@ scipy
 diffpy.utils
 pandas
 matplotlib-base
-bg-mpl-stylesheets
+bg-mpl-stylesheets

requirements/pip.txt

@@ -4,4 +4,4 @@ scipy
 diffpy.utils
 pandas
 matplotlib
-bg-mpl-stylesheets
+bg-mpl-stylesheets

src/diffpy/__init__.py

@@ -21,4 +21,3 @@
 __path__ = extend_path(__path__, __name__)
 
 # End of file
-

src/diffpy/nmf_mapping/nmf_mapping_code.py

@@ -11,11 +11,12 @@
 import numpy as np
 import pandas as pd
 from bg_mpl_stylesheets.styles import all_styles
-from diffpy.utils.parsers.loaddata import loadData
 from scipy import interpolate
 from sklearn.decomposition import NMF, PCA
 from sklearn.exceptions import ConvergenceWarning
 
+from diffpy.utils.parsers.loaddata import loadData
+
 plt.style.use(all_styles["bg-style"])
 warnings.filterwarnings("ignore", category=FutureWarning)
 warnings.filterwarnings("ignore", category=ConvergenceWarning)