2.12.0

See https://github.com/dockstore/dockstore/releases/tag/1.15.0 for a human-readable summary

What's Changed

• My Notebooks Page - SEAB-5114 by @KimberleyChong in #1756
• More Sonar Cloud Cleanup by @KimberleyChong in #1765
• SEAB-5118: Adapt search for notebooks by @svonworl in #1762
• Bump engine.io and socket.io by @dependabot in #1768
• SEAB-5435: Fix mathjax notebook fonts by @svonworl in #1767
• Bump json5 from 2.2.1 to 2.2.3 by @dependabot in #1674
• SEAB-5511: Make all "launch with" button tooltips appear to the left by @svonworl in #1773
• SEAB-5438: Display old Jupyter notebooks by @svonworl in #1771
• SEAB-5121: Improve Colab and add MyBinder notebook launch by @svonworl in #1781
• SEAB-5445: Tint notebook stream error output by @svonworl in #1784
• SEAB-5126: created integration test for snapshotting notebooks by @hyunnaye in #1782
• SEAB-5437: show notebooks in dashboard by @hyunnaye in #1783
• Bump socket.io-parser from 4.2.1 to 4.2.3 by @dependabot in #1786
• SEAB-5530: Smoke tests for notebooks by @svonworl in #1788
• SEAB-5479: add missing period by @y-ng in #1779
• SEAB-5545: Add Colab and mybinder.org notebook "launch with" icons by @svonworl in #1785
• more stub fix by @denis-yuen in #1790
• Determine base branch dynamically by @kathy-t in #1791
• Display correct message for no stargazers by @coverbeck in #1792
• SEAB-5387: added services integration and notebooks count bubble in collections by @hyunnaye in #1776
• SEAB-5570: Fix "non-sticky" search facets by @svonworl in #1793
• SEAB-5470: Use Java image to fix failing installation step by @y-ng in #1787
• SEAB-5568: removed feature flag and preview banner for notebooks by @hyunnaye in #1795
• Use OpenAPI instead of Swagger in the UI by @coverbeck in #1796
• SEAB-3959: Set up coverage in SonarCloud for dockstore-ui2 project by @y-ng in #1798
• SEAB-5413: create pipe for partner display names by @hyunnaye in #1800
• Clean up smoke test code after 1.14 release by @kathy-t in #1801
• DOCK-645: Exclude common terms from tag cloud by @y-ng in #1799
• SEAB-5491: Retry installing cypress dependencies by @y-ng in #1802
• SEAB-663: Add tests for featured content by @y-ng in #1804
• SEAB-4303: Improve error message when github app log retrieval fails by @svonworl in #1806
• Update integration tests with 1.15.0 migration and fix resulting test failures by @svonworl in #1811
• Don't include dev dependency licenses by @david4096 in #1807
• Display cost metric by @kathy-t in #1805
• DOCK-2392: Indicate when recent activities are from unknown users by @y-ng in #1808
• Use new description endpoint by @coverbeck in #1812
• Fix browser tools installation by @coverbeck in #1822
• Set the Angular strictTemplates compiler option by @coverbeck in #1816
• SEAB-5676: allow admins and curators to see a users GitHub app logs by @hyunnaye in #1817
• Update to latest artifacts by @coverbeck in #1824
• DOCK-2414: Remove Swagger from the UI by @y-ng in #1815
• Add npm signature check by @david4096 in #1825
• cleanup compose setup version by @denis-yuen in #1818
• Bump semver from 5.7.1 to 5.7.2 by @dependabot in #1813
• SEAB-5655: allow admins and curators to see user's other linked accounts by @hyunnaye in #1819
• DOCK-2411: Fix console errors when viewing dag tab by @y-ng in #1823
• SEAB-5576: Allow entries to be deleted by @svonworl in #1826
• DOCK-2438: Fix mystery person avatar by @y-ng in #1829
• DOCK-2428: Display markdown tables correctly by @y-ng in #1827
• DOCK-2407: Display entryName and deliveryId in GitHub App Logs by @y-ng in #1828
• add a couple links to the footer and homepage by @denis-yuen in #1831
• SEAB-5655: fixed code regarding community leads seeing user's linked accounts by @hyunnaye in #1832
• DOCK-2439: Add links to user profile by @y-ng in #1833
• DOCK-2406: Remove failing request on tool page by @y-ng in #1809
• DOCK-2449: Enable wrapping when viewing files by @y-ng in #1836
• Fix ChromeDriver install by @denis-yuen in #1839
• Bump actions/checkout from 3 to 4 by @dependabot in #1838
• SEAB-5808: Upgrade sonarscanner to 5.0.1 (#1835) by @denis-yuen in #1842
• Bump tough-cookie and @cypress/request by @dependabot in #1830
• Bump word-wrap from 1.2.3 to 1.2.5 by @dependabot in #1840
• Update expired artifacts by @coverbeck in #1844
• Display cost metric with 2 decimal places by @kathy-t in #1845
• SEAB-5913: Improve search relevance by @svonworl in #1847
• DOCK-2464: Display ignored lambdaevents appropriately by @svonworl in #1849
• SEAB-5820: Mastodon feed widget by @denis-yuen in #1837
• Feature/5568/metrics by @coverbeck in #1848
• DOCK-2442: Handle null version in Event by @svonworl in #1854
• Display search highlighting by @kathy-t in #1850
• SEAB-5982: fix news box on homepage by @hyunnaye in #1856
• DOCK-2471: Fix flaky UI integration tests by @svonworl in #1857
• Use the descriptorLanguage pipe to handle Galaxy on the versions tab by @coverbeck in #1855
• SEAB-5975: Fix broken "HelloWorld" workflow links by @svonworl in #1860
• Update smoke tests for both Twitter and Mastodon by @coverbeck in #1861
• DOCK-1195: Add archived entry UI by @svonworl in #1852
• Disable manual topic editing in the UI for GitHub App entries by @kathy-t in #1859
• DOCK-2471: Reenable skipped test by @svonworl in #1863
• Tell user to reset if there are no search results via facets by @coverbeck in #1864
• SEAB-5951: "Launch with" to a GitHub Codespace by @svonworl in #1865
• Fix merge of disable edit button for GitHub app entries PR by @kathy-t in #1866
• SEAB-5951: Add GitHub logo image by @svonworl in #1868
• SEAB-5443: Remove "Primary" label from notebook file by @svonworl in #1867
• SEAB-6002: Remove residual notebook preview verbiage/code by @svonworl in #1870
• DOCK-2373: Fix inline markdown images by @svonworl in #1871
• SEAB-3091: update ini to latest 4.1.1 by @hyunnaye in #1873
• Refactor and change text for GitHub app registration by @coverbeck in https://github.com/dockstore/dockstore-...

2.12.0-rc.2

What's Changed

• Metrics column value in my-workflows was wrong by @coverbeck in #1918
• SEAB-6185: Do not display "Refresh Organization" button in my-notebooks accordion by @svonworl in #1915
• SEAB-6189: Add notebooks count to dashboard "Starred" box by @svonworl in #1917
• SEAB-6186: Remove "More" and "Discover Tools" button/menu from accordion. by @svonworl in #1919
• SEAB-6190: Suppress "Retrieving metrics data succeeded" snackbar by @svonworl in #1921
• DOCK-2504: Position tooltips above Versions table headings by @svonworl in #1922
• SEAB-6187: Adjust messaging for notebooks by @svonworl in #1920
• SEAB-6188: Enable notebook versions to be hidden by @svonworl in #1916
• Add successful passing rate by @coverbeck in #1929
• SEAB-6292: Fix refresh issue when reloading the Metrics tab by @hyunnaye in #1928
• Swap position of Metrics and Tool tabs by @coverbeck in #1926
• SEAB-6200: hide blank metrics rows by @hyunnaye in #1927
• Make all tabs visible for a workflow by @coverbeck in #1931
• Add drop down to display execution metrics by status by @kathy-t in #1930

Full Changelog: 2.12.0-rc.1...2.12.0-rc2

2.12.0-rc.1

What's Changed

• Update ini version by @coverbeck in #1911

Full Changelog: 2.12.0-rc.0...2.12.0-rc.1

2.12.0-rc.0

SEAB-6164: resizing and alignment fix for the new landing page (#1907)

* resizing and alignment fix

* codacy

* test

* pr preview

* pr review

2.12.0-beta.0

fix TRS link for Galaxy workflows

https://ucsc-cgl.atlassian.net/browse/DOCK-2496
dockstore/dockstore#5751

2.11.1

2.11.1 hotfix

What's Changed

• Fix TRS ID when getting metrics for notebooks, apptools, and services by @kathy-t in #1803
• DOCK-2425: Fix notebooks documentation link by @y-ng in #1810
• Feature/browsertools by @coverbeck in #1820

Full Changelog: 2.11.0...2.11.1

2.11.0

What's Changed

• Fix flaky group test 1 by @coverbeck in #1608
• Organization invitation newline fix by @hyunnaye in #1609
• Try to fix staging smoke test failures by @coverbeck in #1611
• Added in test for hiding version by @fhembroff in #1601
• Remove @material-extended/mde by @coverbeck in #1614
• added Nextflow Tower and Galaxy as integration partners by @hyunnaye in #1615
• Update PR template for docs by @denis-yuen in #1616
• fixed github app link on new dashboard by @hyunnaye in #1621
• DOCK-2114: Fix Duplicate Links to Entry Discuss Topic by @svonworl in #1618
• added notification badge by @hyunnaye in #1619
• Remove overrides to avoid self-DOSsing by @coverbeck in #1627
• Add review instructions by @coverbeck in #1631
• DOCK-1566 create revoke Dockstore token button on My Account by @hyunnaye in #1628
• Retarget dev smoke tests to qa, partial by @coverbeck in #1626
• Migrating from CircleCI's scheduled workflow to schedules pipelines by @hyunnaye in #1634
• Set size of hits to 0 for tag cloud query by @coverbeck in #1639
• Upgrade to Angular 14 by @coverbeck in #1635
• DOCK-2240 Changed colors of each entry widget bubbles on new dashboard by @hyunnaye in #1638
• SEAB-4839 Reset dockstoretestuser4 resources via API by @hyunnaye in #1637
• assign reviewers [skip ci] by @denis-yuen in #1646
• DOCK-2199: Added domain onto the copy block on Copy build info button by @hyunnaye in #1645
• Create codeql.yml by @denis-yuen in #1649
• DOCK-2240: added preview button by @hyunnaye in #1655
• Allow organization admins to interact with invitations by @kathy-t in #1648
• Remove ngx-lite/json-ld dependency by @coverbeck in #1657
• Don't requests hits for sidebar ES query by @coverbeck in #1659
• Feature/seab 4852/node18 by @coverbeck in #1658
• Fix s3 upload by @coverbeck in #1660
• add checklist item for tests by @denis-yuen in #1654
• update and add warning for Linux by @denis-yuen in #1652
• re-order and recommend github apps for tools by @denis-yuen in #1661
• Update PR template for target branch by @coverbeck in #1662
• Feature/seab 5078/smoke by @coverbeck in #1663
• Update to the latest web service by @coverbeck in #1665
• Replace cypress route() with intercept() by @coverbeck in #1666
• Update template with security section by @coverbeck in #1667
• Upgrade to Cypress 9 by @coverbeck in #1668
• Upgrade to Cypress 10 by @coverbeck in #1669
• Fix broken smoke tests by @coverbeck in #1672
• Upgrade to Python 3.11 in check_build_develop by @coverbeck in #1670
• Upgrade to Cypress 11 by @coverbeck in #1671
• Add language version search facet and language version column in versions tab by @kathy-t in #1673
• DOCK-1689: added primary indicator and icon by @hyunnaye in #1664
• fix build issue with chromedriver by @denis-yuen in #1676
• DOCK-2209: fix styling for tables in markdown by @hyunnaye in #1675
• DOCK-2229: added type parameter and removed filtering in ui by @hyunnaye in #1678
• Remove duplicate browser-tools install for nightly no auth tests by @kathy-t in #1679
• Groovy Files Missing Syntax Highlighting by @KimberleyChong in #1681
• 404 Redirects for Remaining Pages - Dock 1170 by @KimberleyChong in #1680
• Handle backend change to for source file metadata by @coverbeck in #1683
• UI Relying on Beta TRS API - Dock-2300 by @KimberleyChong in #1684
• fix height of tos banner mobile by @KimberleyChong in #1686
• DOCK-2290: updated navbar dropdown by @hyunnaye in #1685
• Updated UCSCGI and BDC Logos - DOCK-2204/2291 by @KimberleyChong in #1687
• [ImgBot] Optimize images by @imgbot in #1689
• Feature/seab 5089/cypress12 by @coverbeck in #1688
• update references to java (linux) by @denis-yuen in #1690
• Bump ua-parser-js from 0.7.31 to 0.7.33 by @dependabot in #1693
• Fix flaky tests. by @coverbeck in #1697
• Add the Open Data facet by @coverbeck in #1698
• Updated Dashboard Starred Box - SEAB-5197 by @KimberleyChong in #1696
• Add message for GH App entry with no versions by @kathy-t in #1695
• SEAB-5183: created notebooks page and added to sitemap by @hyunnaye in #1692
• Small tweaks to README.md. by @coverbeck in #1699
• DOCK-2213: edit source code to link to primary descriptor by @hyunnaye in #1694
• Change tooltip position to fix a flaky test by @coverbeck in #1703
• New Dashboard Resizing by @KimberleyChong in #1701
• DOCK-2309: moved badge out of dropdown and fixed bug in file tree by @hyunnaye in #1702
• Organization Search Clears After Enter - DOCK-2308 by @KimberleyChong in #1705
• Tool/Workflow Sidebar Updates - SEAB-5165 by @KimberleyChong in #1704
• Updated Funding Page by @KimberleyChong in #1706
• Don't make org membership requests if logged out by @coverbeck in #1708
• workflow sidebar resize by @KimberleyChong in #1709
• Update smoke tests and Ace editor by @coverbeck in #1710
• Use Friendly Name for Galaxy Workflows - SEAB-5244 by @KimberleyChong in #1707
• Add ".." at beginning of workerPath by @coverbeck in #1712
• SEAB-5108: API-related notebooks UI changes by @svonworl in #1711
• Dashboard UI Fixes - SEAB 4712/SEAB 5198/SEAB 4713 by @KimberleyChong in #1713
• Fix Broken Smoke Test for Staging/Prod - SEAB-5269 by @KimberleyChong in #1715
• Collapse Search Panels - Dock 2317 by @KimberleyChong in #1714
• Corrected typos in dockstore/dockstore-ui2 by @fhembroff in #1716
• [ImgBot] Optimize images by @imgbot in #1717
• Add Dashboard Header & Update Header Styles - SEAB-5199/SEAB-5226 by @KimberleyChong in #1718
• Remove deprecated tildes in scss import by @coverbeck in #1721
• Updated Blue Banner Style by @KimberleyChong in #1722
• SEAB-5270: Ensure UI builds/runs with new entry type information by @svonworl in #1727
• Indicate open on versions table by @coverbeck in #1723
• Redirect to same workflow after refresh if possible by @kathy-t in #1725...

2.11.0-rc.0

What's Changed

• SEAB-5435: Fix mathjax notebooks font url by @svonworl in #1769
• DOCK-2383: removed checkUserExists function to allow unauthorized users to view user pages by @hyunnaye in #1772
• DOCK-2365: Removing DAG node tooltips from being stuck on footer by @hyunnaye in #1770
• SEAB-5511: Make all "launch with" button tooltips appear to the left by @svonworl in #1774
• Minor wording changes for GH App registration by @kathy-t in #1777
• permissions fix by @denis-yuen in #1780

Full Changelog: 2.11.0-beta.0...2.11.0-rc.0

2.11.0-beta.0

For testing on staging

What's Changed

• Fix flaky group test 1 by @coverbeck in #1608
• Organization invitation newline fix by @hyunnaye in #1609
• Try to fix staging smoke test failures by @coverbeck in #1611
• Added in test for hiding version by @fhembroff in #1601
• Remove @material-extended/mde by @coverbeck in #1614
• added Nextflow Tower and Galaxy as integration partners by @hyunnaye in #1615
• Update PR template for docs by @denis-yuen in #1616
• fixed github app link on new dashboard by @hyunnaye in #1621
• DOCK-2114: Fix Duplicate Links to Entry Discuss Topic by @svonworl in #1618
• added notification badge by @hyunnaye in #1619
• Remove overrides to avoid self-DOSsing by @coverbeck in #1627
• Add review instructions by @coverbeck in #1631
• DOCK-1566 create revoke Dockstore token button on My Account by @hyunnaye in #1628
• Retarget dev smoke tests to qa, partial by @coverbeck in #1626
• Migrating from CircleCI's scheduled workflow to schedules pipelines by @hyunnaye in #1634
• Set size of hits to 0 for tag cloud query by @coverbeck in #1639
• Upgrade to Angular 14 by @coverbeck in #1635
• DOCK-2240 Changed colors of each entry widget bubbles on new dashboard by @hyunnaye in #1638
• SEAB-4839 Reset dockstoretestuser4 resources via API by @hyunnaye in #1637
• assign reviewers [skip ci] by @denis-yuen in #1646
• DOCK-2199: Added domain onto the copy block on Copy build info button by @hyunnaye in #1645
• Create codeql.yml by @denis-yuen in #1649
• DOCK-2240: added preview button by @hyunnaye in #1655
• Allow organization admins to interact with invitations by @kathy-t in #1648
• Remove ngx-lite/json-ld dependency by @coverbeck in #1657
• Don't requests hits for sidebar ES query by @coverbeck in #1659
• Feature/seab 4852/node18 by @coverbeck in #1658
• Fix s3 upload by @coverbeck in #1660
• add checklist item for tests by @denis-yuen in #1654
• update and add warning for Linux by @denis-yuen in #1652
• re-order and recommend github apps for tools by @denis-yuen in #1661
• Update PR template for target branch by @coverbeck in #1662
• Feature/seab 5078/smoke by @coverbeck in #1663
• Update to the latest web service by @coverbeck in #1665
• Replace cypress route() with intercept() by @coverbeck in #1666
• Update template with security section by @coverbeck in #1667
• Upgrade to Cypress 9 by @coverbeck in #1668
• Upgrade to Cypress 10 by @coverbeck in #1669
• Fix broken smoke tests by @coverbeck in #1672
• Upgrade to Python 3.11 in check_build_develop by @coverbeck in #1670
• Upgrade to Cypress 11 by @coverbeck in #1671
• Add language version search facet and language version column in versions tab by @kathy-t in #1673
• DOCK-1689: added primary indicator and icon by @hyunnaye in #1664
• fix build issue with chromedriver by @denis-yuen in #1676
• DOCK-2209: fix styling for tables in markdown by @hyunnaye in #1675
• DOCK-2229: added type parameter and removed filtering in ui by @hyunnaye in #1678
• Remove duplicate browser-tools install for nightly no auth tests by @kathy-t in #1679
• Groovy Files Missing Syntax Highlighting by @KimberleyChong in #1681
• 404 Redirects for Remaining Pages - Dock 1170 by @KimberleyChong in #1680
• Handle backend change to for source file metadata by @coverbeck in #1683
• UI Relying on Beta TRS API - Dock-2300 by @KimberleyChong in #1684
• fix height of tos banner mobile by @KimberleyChong in #1686
• DOCK-2290: updated navbar dropdown by @hyunnaye in #1685
• Updated UCSCGI and BDC Logos - DOCK-2204/2291 by @KimberleyChong in #1687
• [ImgBot] Optimize images by @imgbot in #1689
• Feature/seab 5089/cypress12 by @coverbeck in #1688
• update references to java (linux) by @denis-yuen in #1690
• Bump ua-parser-js from 0.7.31 to 0.7.33 by @dependabot in #1693
• Fix flaky tests. by @coverbeck in #1697
• Add the Open Data facet by @coverbeck in #1698
• Updated Dashboard Starred Box - SEAB-5197 by @KimberleyChong in #1696
• Add message for GH App entry with no versions by @kathy-t in #1695
• SEAB-5183: created notebooks page and added to sitemap by @hyunnaye in #1692
• Small tweaks to README.md. by @coverbeck in #1699
• DOCK-2213: edit source code to link to primary descriptor by @hyunnaye in #1694
• Change tooltip position to fix a flaky test by @coverbeck in #1703
• New Dashboard Resizing by @KimberleyChong in #1701
• DOCK-2309: moved badge out of dropdown and fixed bug in file tree by @hyunnaye in #1702
• Organization Search Clears After Enter - DOCK-2308 by @KimberleyChong in #1705
• Tool/Workflow Sidebar Updates - SEAB-5165 by @KimberleyChong in #1704
• Updated Funding Page by @KimberleyChong in #1706
• Don't make org membership requests if logged out by @coverbeck in #1708
• workflow sidebar resize by @KimberleyChong in #1709
• Update smoke tests and Ace editor by @coverbeck in #1710
• Use Friendly Name for Galaxy Workflows - SEAB-5244 by @KimberleyChong in #1707
• Add ".." at beginning of workerPath by @coverbeck in #1712
• SEAB-5108: API-related notebooks UI changes by @svonworl in #1711
• Dashboard UI Fixes - SEAB 4712/SEAB 5198/SEAB 4713 by @KimberleyChong in #1713
• Fix Broken Smoke Test for Staging/Prod - SEAB-5269 by @KimberleyChong in #1715
• Collapse Search Panels - Dock 2317 by @KimberleyChong in #1714
• Corrected typos in dockstore/dockstore-ui2 by @fhembroff in #1716
• [ImgBot] Optimize images by @imgbot in #1717
• Add Dashboard Header & Update Header Styles - SEAB-5199/SEAB-5226 by @KimberleyChong in #1718
• Remove deprecated tildes in scss import by @coverbeck in #1721
• Updated Blue Banner Style by @KimberleyChong in #1722
• SEAB-5270: Ensure UI builds/runs with new entry type information by @svonworl in #1727
• Indicate open on versions table by @coverbeck in #1723
• Redirect to same workflow after refresh if possible by @kathy-t in https://github.com/docksto...

2.10.1

What's Changed

• DOCK-2061: Fix Weird Label Editing Behavior by @svonworl in #1620
• DOCK-2254 bug fix by @hyunnaye in #1625
• DOCK-2255 fixed bug in My Tools and My Services by @hyunnaye in #1630
• DOCK-1806 Added Nextflow Tower and Galaxy as integration partners by @hyunnaye in #1633
• DOCK-2241 Change Cancel button to OK in public tool version modal by @hyunnaye in #1632

Full Changelog: 2.10.0...2.10.1