pom.xml

<?xml version="1.0"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>

    <groupId>io.dockstore</groupId>
    <artifactId>dockstore-file-icgc-storage-client-plugin</artifactId>
    <packaging>jar</packaging>
    <name>dockstore-file-icgc-storage-client-plugin</name>
    <version>0.0.8-SNAPSHOT</version>

    <properties>
        <plugin.id>${project.artifactId}</plugin.id>
        <plugin.class>io.dockstore.provision.ICGCStorageClientPlugin</plugin.class>
        <plugin.version>${project.version}</plugin.version>
        <plugin.provider>Denis Yuen</plugin.provider>
        <plugin.dependencies />
        <github.url>scm:git:git@github.com:dockstore/icgc-storage-client-plugin.git</github.url>
        <dockstore.version>1.5.3</dockstore.version>
    </properties>

    <distributionManagement>
        <repository>
            <id>central</id>
            <name>artifacts.oicr.on.ca-releases</name>
            <url>https://artifacts.oicr.on.ca/artifactory/collab-release</url>
        </repository>
    </distributionManagement>

    <scm>
        <connection>${github.url}</connection>
        <developerConnection>${github.url}</developerConnection>
        <url>${github.url}</url>
        <tag>1.1.3</tag>
    </scm>

    <repositories>
        <repository>
            <id>artifacts.oicr.on.ca</id>
            <name>artifacts.oicr.on.ca</name>
            <url>https://artifacts.oicr.on.ca/artifactory/collab-release</url>
            <releases>
                <enabled>true</enabled>
            </releases>
            <snapshots>
                <enabled>false</enabled>
            </snapshots>
        </repository>
    </repositories>

    <licenses>
        <license>
            <name>GNU General Public License (GPLv3)</name>
            <url>http://www.gnu.org/licenses/gpl-3.0.html</url>
        </license>
    </licenses>

    <build>
        <pluginManagement>
            <plugins>
                <plugin>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-deploy-plugin</artifactId>
                    <version>2.8.2</version>
                </plugin>
                <plugin>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-compiler-plugin</artifactId>
                    <version>3.5.1</version>
                    <configuration>
                        <source>1.8</source>
                        <target>1.8</target>
                        <showDeprecation>true</showDeprecation>
                    </configuration>
                </plugin>
            </plugins>
        </pluginManagement>

        <plugins>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-release-plugin</artifactId>
                <version>2.5.3</version>
            </plugin>
            <!-- DOESN'T WORK WITH MAVEN 3 (I defined the plugin metadata in properties section)
            <plugin>
                <groupId>org.codehaus.mojo</groupId>
                <artifactId>properties-maven-plugin</artifactId>
                <version>1.0-alpha-2</version>
                <executions>
                  <execution>
                    <phase>initialize</phase>
                    <goals>
                      <goal>read-project-properties</goal>
                    </goals>
                    <configuration>
                      <files>
                        <file>plugin.properties</file>
                      </files>
                    </configuration>
                  </execution>
                </executions>
            </plugin>
            -->

            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-antrun-plugin</artifactId>
                <version>1.6</version>
                <executions>
                    <execution>
                        <id>unzip jar file</id>
                        <phase>package</phase>
                        <configuration>
                            <target>
                                <unzip src="target/${project.artifactId}-${project.version}.${project.packaging}" dest="target/plugin-classes" />
                            </target>
                        </configuration>
                        <goals>
                            <goal>run</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>

            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-assembly-plugin</artifactId>
                <version>3.0.0</version>
                <configuration>
                    <descriptors>
                        <descriptor>
                            src/main/assembly/assembly.xml
                        </descriptor>
                    </descriptors>
                    <appendAssemblyId>false</appendAssemblyId>
                </configuration>
                <executions>
                    <execution>
                        <id>make-assembly</id>
                        <phase>package</phase>
                        <goals>
                            <goal>single</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-deploy-plugin</artifactId>
                <version>2.8.2</version>
            </plugin>

            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-jar-plugin</artifactId>
                <version>2.4</version>
                <configuration>
                    <archive>
                        <manifestEntries>
                            <Plugin-Id>${plugin.id}</Plugin-Id>
                            <Plugin-Class>${plugin.class}</Plugin-Class>
                            <Plugin-Version>${plugin.version}</Plugin-Version>
                            <Plugin-Provider>${plugin.provider}</Plugin-Provider>
                            <Plugin-Dependencies>${plugin.dependencies}</Plugin-Dependencies>
                        </manifestEntries>
                    </archive>
                </configuration>
            </plugin>
	    <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-surefire-plugin</artifactId>
                <version>3.0.0-M3</version>
            </plugin>
        </plugins>
    </build>

    <dependencyManagement>
        <dependencies>
            <dependency>
                <groupId>org.apache.commons</groupId>
                <artifactId>commons-lang3</artifactId>
                <version>3.5</version>
            </dependency>
        </dependencies>
    </dependencyManagement>

    <dependencies>
        <dependency>
            <groupId>ro.fortsoft.pf4j</groupId>
            <artifactId>pf4j</artifactId>
            <!-- !!! VERY IMPORTANT -->
            <scope>provided</scope>
            <version>1.1.1</version>
        </dependency>

        <dependency>
            <groupId>io.dockstore</groupId>
            <artifactId>dockstore-file-plugin-parent</artifactId>
            <version>${dockstore.version}</version>
            <!-- !!! VERY IMPORTANT -->
            <scope>provided</scope>
        </dependency>

        <dependency>
            <groupId>io.dockstore</groupId>
            <artifactId>dockstore-common</artifactId>
            <version>${dockstore.version}</version>
            <exclusions>
                <exclusion>
                    <groupId>*</groupId>
                    <artifactId>*</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>org.apache.commons</groupId>
            <artifactId>commons-lang3</artifactId>
        </dependency>
        <dependency>
            <groupId>commons-logging</groupId>
            <artifactId>commons-logging</artifactId>
            <version>1.2</version>
            <scope>provided</scope>
        </dependency>
        <dependency>
            <groupId>log4j</groupId>
            <artifactId>log4j</artifactId>
            <version>1.2.17</version>
            <scope>provided</scope>
        </dependency>
        <dependency>
            <groupId>com.google.guava</groupId>
            <artifactId>guava</artifactId>
            <version>19.0</version>
        </dependency>
        <dependency>
            <groupId>org.junit.jupiter</groupId>
            <artifactId>junit-jupiter-api</artifactId>
            <version>5.1.0</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.junit.jupiter</groupId>
            <artifactId>junit-jupiter-engine</artifactId>
            <version>5.1.0</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.junit.vintage</groupId>
            <artifactId>junit-vintage-engine</artifactId>
            <version>5.1.0</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.junit.platform</groupId>
            <artifactId>junit-platform-launcher</artifactId>
            <version>1.1.0</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.junit.platform</groupId>
            <artifactId>junit-platform-runner</artifactId>
            <version>1.1.0</version>
            <scope>test</scope>
        </dependency>
    </dependencies>
</project>