[Tue Dec 3 08:51:42 2024]
localrule download:
output: sequences/ERR3664756_Heavy_IGHG.list
jobid: 169
reason: Missing output files: sequences/ERR3664756_Heavy_IGHG.list
wildcards: filename=ERR3664756_Heavy_IGHG
resources: tmpdir=/tmp
gzip: stdin: unexpected end of file
[Tue Dec 3 08:51:44 2024]
Error in rule download:
jobid: 169
output: sequences/ERR3664756_Heavy_IGHG.list
shell:
wget -qO- http://opig.stats.ox.ac.uk/webapps/ngsdb/unpaired/Bender_2020/csv/ERR3664756_Heavy_IGHG.csv.gz | gunzip -c | tail -n+3 | cut -d, -f1 > sequences/ERR3664756_Heavy_IGHG.list
(one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!)
Removing output files of failed job download since they might be corrupted:
sequences/ERR3664756_Heavy_IGHG.list
Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
Complete log: .snakemake/log/2024-12-03T085136.348937.snakemake.log
WorkflowError:
At least one job did not complete successfully.
[Tue Dec 3 08:51:42 2024]
localrule download:
output: sequences/ERR3664756_Heavy_IGHG.list
jobid: 169
reason: Missing output files: sequences/ERR3664756_Heavy_IGHG.list
wildcards: filename=ERR3664756_Heavy_IGHG
resources: tmpdir=/tmp
gzip: stdin: unexpected end of file
[Tue Dec 3 08:51:44 2024]
Error in rule download:
jobid: 169
output: sequences/ERR3664756_Heavy_IGHG.list
shell:
wget -qO- http://opig.stats.ox.ac.uk/webapps/ngsdb/unpaired/Bender_2020/csv/ERR3664756_Heavy_IGHG.csv.gz | gunzip -c | tail -n+3 | cut -d, -f1 > sequences/ERR3664756_Heavy_IGHG.list
(one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!)
Removing output files of failed job download since they might be corrupted:
sequences/ERR3664756_Heavy_IGHG.list
Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
Complete log: .snakemake/log/2024-12-03T085136.348937.snakemake.log
WorkflowError:
At least one job did not complete successfully.