Task List for Weeks of 2/23 and 3/2

[kdahlquist]

For @anuvarsh

• Allow user to set maximum weight value against which all other weights are normalized #264, user defined normalization factor (priority 0)
• 598-04: Materials & Methods and Results #370, Materials and Methods/ Results (priority 0)

For @yshin4 (generally in the vein of tidying up the graph layout features/bugs)

• Reduce white space one either side of gene label #333, reduce white space on either side of label (priority 0)
• Long node labels mess up self-regulatory arrows #318, long node labels mess up self-regulatory arrows (priority 0.5) because these two seem related
• Make the arrowheads larger for unweighted and thinnest weighted edges: fix tips going behind nodes #392, make arrowheads bigger for thinnest black, grey, magenta, and cyan arrows (0.5) because if working on edge markers, might as well as tackle related issues
• Blunt markers are not centered especially for thick edges #188, another edge marker-related issue (priority 0.5)

For @mihirsamdarshi

• Semantic checker needs to be integrated into SIF and GraphML importers #386; @eileenchoe and @ebachoura may have already finished this one
• Network loads with black edges and cyan blunt end markers #355, bug where network loads with black edges and cyan blunt end markers due to real number weight values in sheet called "network" instead of "network_optimized_weights" (priority 0)
• Accessibility of GRNsight to color blind users #381, update color scheme to be color blind-friendly (priority 0.5)

For @eileenchoe

• Semantic checker needs to be integrated into SIF and GraphML importers #386; @eileenchoe and @ebachoura may have already finished this one
• Add "syntactic" tests for SIF format #362, syntactic tests for SIF (priority 0); set up meeting with @kdahlquist
• Update state diagram/automatic client-side test generator #326, write program to generate state diagram (with @ebachoura , priority 0.5)
• npm install GRNsight #361, finalize pending decisions by @kdahlquist and @dondi (priority 0.5)

For @ebachoura

• Semantic checker needs to be integrated into SIF and GraphML importers #386; @eileenchoe and @ebachoura may have already finished this one
• Add "syntactic" tests for graphml format #363, syntactic tests for GraphML (priority 0); set up meeting with @kdahlquist
• Update state diagram/automatic client-side test generator #326, write program to generate state diagram (with @eileenchoe , priority 0.5)
• npm install GRNsight #361, finalize pending decisions by @kdahlquist and @dondi (priority 0.5)

For @NAnguiano

• Implement automatic discovery of initial drafting board and viewport size #395 Implement automatic discovery of initial drafting board and viewport size (priority 0)
• Implement preference to change viewport size between small, medium, large #397 Implement preference to change viewport size between small, medium, large (priority 0)
• Implement preference for hard or adaptive drafting board size #396 Implement preference for hard and adaptive drafting board size (priority 0)
• Implement adaptive drafting board resizing algorithm #398 Implement adaptive drafting board size (priority 0)
• Implement viewport scrolling and drafting board scaling #399 Implement viewport scrolling and drafting board scaling (priority 0)
• Investigate hierarchical layout #290, work on hierarchical layout (priority 0.5)

For @kdahlquist

• Option for showing or hiding all weights #285 review requested, when the change is up on beta
• Website updates to News, Publications, People pages #418, upload poster to slideshare, update publication and news web pages

For @dondi

• npm install GRNsight #361, @kdahlquist wasn't able to remember what the final decision was on this one, @dondi needs to give direction
• Semantic versioning in light of more frequent changes to beta #393, need answer to this question
• How to fit "reveiw requested" and refreshing beta server into workflow #404, please comment

[kdahlquist]

Everyone, sign off on #404.

[kdahlquist]

Reminder to everyone that now the LMU Symposium prep is over, please return to your assigned issues/tasks for this week. We will refresh this task list at our meeting on Thursday.

[kdahlquist]

All relevant open issues have been moved to #430.