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anndata 0.9.0

  • SUPERSEDED: This package is superseded by anndataR on Bioconductor (https://anndataR.scverse.org). anndataR provides a pure R implementation of the AnnData data structure without requiring Python, along with native .h5ad file reading/writing and conversion to/from SingleCellExperiment and Seurat objects. A migration guide is available at vignette("migration_to_anndataR", package = "anndata").

anndata 0.8.0

  • FUNCTIONALITY: Added support for read_zarr() and write_zarr() (PR #33).

  • BUG FIX: Use the right interface for the all.equal() function (PR #32).

  • BUG FIX: Add py_to_r converter for anndata.abc._AbstractCSDataset (PR #34).

  • MINOR CHANGES: Ignore python warnings when running tests (PR #34).

  • MAJOR CHANGES: Update reticulate package dependency management (PR #36).

  • MINOR CHANGES: Clean up roxygen code (PR #36).

  • MINOR CHANGES: Use cli for generating errors (PR #36).

anndata 0.7.5.5

  • FUNCTIONALITY: Added initial support for loading AnnData with backed=TRUE.

anndata 0.7.5.4

  • BUG FIX: Set dimnames on layer views as well (#16).

  • BUG FIX: Fix Github Actions for R CMD Check, test-coverage and pkgdown.

  • DOCUMENTATION: Fix pkgdown config structure by adding missing topics.

  • DOCUMENTATION: Regenerate the Rd files using the current CRAN version of roxygen2.

anndata 0.7.5.3

  • BUG FIX write_h5ad(ad): Fix function pointer (#8).

  • BUG FIX: Add manual converter function for converting a csc_matrix to dgCMatrix (#11).

anndata 0.7.5.2

  • MINOR CHANGE: Add getters and setter for the internal python objects.

  • MINOR CHANGE: Alter how and when Python objects get converted to R and vice versa.

  • DOCUMENTATION: Documentation site is available at https://anndata.dynverse.org!

  • DOCUMENTATION: Added two basic vignettes.

anndata 0.7.5.1

  • MINOR CHANGE: Add wrapper classes for Raw and Layers objects.

  • MAJOR CHANGE: Calling ad[..., ...] now correctly returns a view of ad instead of returning a matrix.

  • TESTING: Extend tests based on theislab/anndata repository.

anndata 0.7.5 (2020-11-19)

  • MINOR CHANGES: Updated Python requirements to anndata 0.7.5.

  • NEW FEATURE AnnData(): Added obsp, varp, and raw objects to parameters.

  • TESTING: Added more tests based on theislab/anndata repository.

anndata 0.7.4 (2020-11-04)

  • Initial release