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anndata 0.8.0

This release updates uses the new package dependency management system in reticulate 1.41, and updates several other functions.

Changelog

  • FUNCTIONALITY: Added support for read_zarr() and write_zarr() (PR #33).

  • BUG FIX: Use the right interface for the all.equal() function (PR #32).

  • BUG FIX: Add py_to_r converter for anndata.abc._AbstractCSDataset (PR #34).

  • MINOR CHANGES: Ignore python warnings when running tests (PR #34).

  • MAJOR CHANGES: Update reticulate package dependency management (PR #36).

  • MINOR CHANGES: Clean up roxygen code (PR #36).

  • MINOR CHANGES: Use cli for generating errors (PR #36).

Test environments

  • local R installation
  • win-builder (devel)
  • Github Actions:
    • Windows, R release
    • Mac OS X, R release
    • Ubuntu, R devel
    • Ubuntu, R release
    • Ubuntu, R oldrelease

── R CMD check results ───────────────────────────────────── anndata 0.8.0 ──── Duration: 34.9s

0 errors ✔ | 0 warnings ✔ | 0 notes ✔

Reverse dependencies

revdepcheck::revdep_check(num_workers = 4)
── INIT ────────────────────────────────────────────── Computing revdeps ──
── INSTALL ────────────────────────────────────────────────── 2 versions ──
Installing CRAN version of anndata
also installing the dependencies ‘rprojroot’, ‘Rcpp’, ‘RcppTOML’, ‘here’, ‘jsonlite’, ‘png’, ‘rappdirs’, ‘rlang’, ‘withr’, ‘assertthat’, ‘R6’, ‘reticulate’

Installing DEV version of anndata
Installing 15 packages: rprojroot, Rcpp, withr, rlang, rappdirs, png, jsonlite, here, RcppTOML, glue, cli, reticulate, R6, lifecycle, assertthat
── CHECK ──────────────────────────────────────────────────── 6 packages ──
OK: 6
BROKEN: 0
Total time: 1 hour