Building COSMO Dycore fails in configure due to wrong directory generation with EB 4.2.0 / EB 4.2.1 #3361
Description
It fails with this ERROR:
CMake Error: The source directory "/apps/daint/UES/omlins/cosmo_pe1908_keepsrc/Dycore/551f6b4/dycore" does not exist.
The correct folder would be:
/apps/daint/UES/omlins/cosmo_pe1908_keepsrc/Dycore/551f6b4/CrayGNU-19.08-cuda-10.1-crclim-double/dycore/
i.e. CrayGNU-19.08-cuda-10.1-crclim-double is missing.
It works with EB <4.2.0. The shell output of the complete failing use case is here:
$ ssh -X daint
omlins@daint103:~> export EASYBUILD_BUILDPATH=/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1
omlins@daint103:~> export EASYBUILD_PREFIX=/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1
omlins@daint103:~> export EB_CUSTOM_REPOSITORY=/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/production/easybuild
omlins@daint103:~> module load daint-gpu
omlins@daint103:~> module unload xalt
omlins@daint103:~> module load cdt/19.08
Switching to atp/2.1.3.
Switching to cce/9.0.1.
Switching to cray-libsci/19.06.1.
Switching to cray-mpich/7.7.9.
Switching to craype/2.6.0.
Switching to modules/3.2.11.2.
Switching to perftools-base/7.1.0.
Switching to pmi/5.0.14.
omlins@daint103:~> module load EasyBuild-custom/cscs
omlins@daint103:~> module switch EasyBuild EasyBuild/4.2.1
alps/6.6.56-7.0.1.1_4.10__g2e60a7e4.ari
atp/2.1.3
cce/9.0.1
cdt/19.08
cray-libsci/19.06.1
cray-mpich/7.7.9
craype/2.6.0
craype-haswell
craype-network-aries
daint-gpu
dmapp/7.1.1-7.0.1.1_4.8__g38cf134.ari
dvs/2.12_2.2.151-7.0.1.1_5.6__g7eb5e703
EasyBuild/4.2.0
EasyBuild-custom/cscs
gni-headers/5.0.12.0-7.0.1.1_6.7__g3b1768f.ari
job/2.2.4-7.0.1.1_3.8__g36b56f4.ari
modules/3.2.11.2
perftools-base/7.1.0
pmi/5.0.14
PrgEnv-cray/6.0.5
rca/2.2.20-7.0.1.1_4.9__g8e3fb5b.ari
slurm/20.02.2-1
udreg/2.3.2-7.0.1.1_3.9__g8175d3d.ari
ugni/6.0.14.0-7.0.1.1_7.10__ge78e5b0.ari
xpmem/2.2.19-7.0.1.1_3.7__gdcf436c.ari
omlins@daint103:~> cd /apps/daint/UES/omlins/cosmo_pe1908_keepsrc/
Boost/ CrayCCE/ grib_api/ production/
bzip2/ CrayGNU/ JasPer/ Serialbox/
CMake/ Dycore/ libgrib1_crclim/ software/
COSMO_pompa/ ebfiles_repo/ modules/ STELLA/
omlins@daint103:~> mkdir /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1
omlins@daint103:~> cd /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1
omlins@daint103:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1> git clone https://github.com/eth-cscs/production.git
Cloning into 'production'...
remote: Enumerating objects: 28, done.
remote: Counting objects: 100% (28/28), done.
remote: Compressing objects: 100% (24/24), done.
remote: Total 42865 (delta 13), reused 11 (delta 4), pack-reused 42837
Receiving objects: 100% (42865/42865), 7.74 MiB | 10.71 MiB/s, done.
Resolving deltas: 100% (31923/31923), done.
Checking out files: 100% (4601/4601), done.
omlins@daint103:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1> cd production/
omlins@daint103:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/production> eb Dycore-551f6b4-CrayGNU-19.08-cuda-10.1-crclim-double.eb -r --disable-cleanup-tmpdir --disable-cleanup-builddir && eb COSMO_pompa-f9916ba-28.11.19-CrayCCE-19.08-cuda-10.0-crclim-double.eb -r --disable-cleanup-tmpdir --disable-cleanup-builddir
== temporary log file in case of crash /run/user/24345/easybuild/tmp/eb-Yx5j68/easybuild-I7OUpB.log
WARNING: Deprecated functionality, will no longer work in v5.0: Use of 'dummy' toolchain is deprecated, use 'system' toolchain instead; see http://easybuild.readthedocs.org/en/latest/Deprecated-functionality.html for more information
== resolving dependencies ...
WARNING: Deprecated functionality, will no longer work in v5.0: Use of 'dummy' toolchain is deprecated, use 'system' toolchain instead; see http://easybuild.readthedocs.org/en/latest/Deprecated-functionality.html for more information
== processing EasyBuild easyconfig /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/production/easybuild/easyconfigs/c/CMake/CMake-3.12.0.eb
== building and installing CMake/.3.12.0...
== fetching files...
== creating build dir, resetting environment...
== unpacking...
== patching...
== preparing...
== configuring...
== building...
== testing...
== installing...
== taking care of extensions...
== restore after iterating...
== postprocessing...
== sanity checking...
== cleaning up...
== creating module...
== permissions...
== packaging...
== COMPLETED: Installation ended successfully (took 5 min 2 sec)
== Results of the build can be found in the log file(s) /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/CMake/3.12.0/easybuild/easybuild-CMake-3.12.0-20200603.172053.log
== processing EasyBuild easyconfig /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/production/easybuild/easyconfigs/c/CrayGNU/CrayGNU-19.08.eb
== building and installing CrayGNU/.19.08...
== fetching files...
== creating build dir, resetting environment...
== unpacking...
== patching...
== preparing...
== configuring...
== building...
== testing...
== installing...
== taking care of extensions...
== restore after iterating...
== postprocessing...
== sanity checking...
== cleaning up...
== creating module...
== permissions...
== packaging...
== COMPLETED: Installation ended successfully (took 3 sec)
== Results of the build can be found in the log file(s) /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/CrayGNU/19.08/easybuild/easybuild-CrayGNU-19.08-20200603.172057.log
== processing EasyBuild easyconfig /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/production/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-19.08.eb
== building and installing bzip2/.1.0.6-CrayGNU-19.08...
== fetching files...
== creating build dir, resetting environment...
== unpacking...
== patching...
== preparing...
== configuring...
== building...
== testing...
== installing...
== taking care of extensions...
== restore after iterating...
== postprocessing...
== sanity checking...
== cleaning up...
== creating module...
== permissions...
== packaging...
== COMPLETED: Installation ended successfully (took 10 sec)
== Results of the build can be found in the log file(s) /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/bzip2/1.0.6-CrayGNU-19.08/easybuild/easybuild-bzip2-1.0.6-20200603.172107.log
== processing EasyBuild easyconfig /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/production/easybuild/easyconfigs/b/Boost/Boost-1.67.0-CrayGNU-19.08.eb
== building and installing Boost/1.67.0-CrayGNU-19.08...
== fetching files...
== creating build dir, resetting environment...
== unpacking...
== patching...
== preparing...
== configuring...
== building...
== testing...
== installing...
== taking care of extensions...
== restore after iterating...
== postprocessing...
== sanity checking...
== cleaning up...
== creating module...
== permissions...
== packaging...
== COMPLETED: Installation ended successfully (took 4 min 0 sec)
== Results of the build can be found in the log file(s) /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/Boost/1.67.0-CrayGNU-19.08/easybuild/easybuild-Boost-1.67.0-20200603.172507.log
== processing EasyBuild easyconfig /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/production/easybuild/easyconfigs/s/Serialbox/Serialbox-2.4.1-CrayGNU-19.08.eb
== building and installing Serialbox/2.4.1-CrayGNU-19.08...
== fetching files...
== creating build dir, resetting environment...
== unpacking...
== patching...
== preparing...
== configuring...
== building...
== testing...
== installing...
== taking care of extensions...
== restore after iterating...
== postprocessing...
== sanity checking...
== cleaning up...
== creating module...
== permissions...
== packaging...
== COMPLETED: Installation ended successfully (took 51 sec)
== Results of the build can be found in the log file(s) /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/Serialbox/2.4.1-CrayGNU-19.08/easybuild/easybuild-Serialbox-2.4.1-20200603.172559.log
== processing EasyBuild easyconfig /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/production/easybuild/easyconfigs/s/STELLA/STELLA-4a5f9c5-CrayGNU-19.08-crclim-double.eb
== building and installing STELLA/4a5f9c5-CrayGNU-19.08-crclim-double...
== fetching files...
== creating build dir, resetting environment...
== unpacking...
== patching...
== preparing...
== configuring...
== building...
== testing...
== installing...
== taking care of extensions...
== restore after iterating...
== postprocessing...
== sanity checking...
== cleaning up...
== creating module...
== permissions...
== packaging...
== COMPLETED: Installation ended successfully (took 1 min 52 sec)
== Results of the build can be found in the log file(s) /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/STELLA/4a5f9c5-CrayGNU-19.08-crclim-double/easybuild/easybuild-STELLA-4a5f9c5-20200603.172752.log
== processing EasyBuild easyconfig /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/production/easybuild/easyconfigs/d/Dycore/Dycore-551f6b4-CrayGNU-19.08-cuda-10.1-crclim-double.eb
== building and installing Dycore/551f6b4-CrayGNU-19.08-cuda-10.1-crclim-double...
== fetching files...
== creating build dir, resetting environment...
== unpacking...
== patching...
== preparing...
== configuring...
== FAILED: Installation ended unsuccessfully (build directory: /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/Dycore/551f6b4/CrayGNU-19.08-cuda-10.1-crclim-double): build failed (first 300 chars): cmd " cmake -DCMAKE_INSTALL_PREFIX=/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/Dycore/551f6b4-CrayGNU-19.08-cuda-10.1-crclim-double -DCMAKE_C_COMPILER='cc' -DCMAKE_Fortran_FLAGS='-O2 -fno-math-errno' -DCMAKE_CXX_FLAGS='-O2 -fno-math-errno' -DCMAKE_CXX_COMPILER='CC' -DCMAKE_Fortran_C (took 3 sec)
== Results of the build can be found in the log file(s) /run/user/24345/easybuild/tmp/eb-Yx5j68/easybuild-Dycore-551f6b4-20200603.172752.aPLVW.log
ERROR: Build of /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/production/easybuild/easyconfigs/d/Dycore/Dycore-551f6b4-CrayGNU-19.08-cuda-10.1-crclim-double.eb failed (err: 'build failed (first 300 chars): cmd " cmake -DCMAKE_INSTALL_PREFIX=/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/Dycore/551f6b4-CrayGNU-19.08-cuda-10.1-crclim-double -DCMAKE_C_COMPILER=\'cc\' -DCMAKE_Fortran_FLAGS=\'-O2 -fno-math-errno\' -DCMAKE_CXX_FLAGS=\'-O2 -fno-math-errno\' -DCMAKE_CXX_COMPILER=\'CC\' -DCMAKE_Fortran_C')
omlins@daint103:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/production> module list
Currently Loaded Modulefiles:
1) modules/3.2.11.2(default)
2) cce/9.0.1(default)
3) craype-haswell
4) craype-network-aries
5) craype/2.6.0(default)
6) cray-libsci/19.06.1(default)
7) udreg/2.3.2-7.0.1.1_3.9__g8175d3d.ari
8) ugni/6.0.14.0-7.0.1.1_7.10__ge78e5b0.ari
9) pmi/5.0.14(default)
10) dmapp/7.1.1-7.0.1.1_4.8__g38cf134.ari
11) gni-headers/5.0.12.0-7.0.1.1_6.7__g3b1768f.ari
12) xpmem/2.2.19-7.0.1.1_3.7__gdcf436c.ari
13) job/2.2.4-7.0.1.1_3.8__g36b56f4.ari
14) dvs/2.12_2.2.151-7.0.1.1_5.6__g7eb5e703
15) alps/6.6.56-7.0.1.1_4.10__g2e60a7e4.ari
16) rca/2.2.20-7.0.1.1_4.9__g8e3fb5b.ari
17) atp/2.1.3(default)
18) perftools-base/7.1.0(default)
19) PrgEnv-cray/6.0.5
20) cray-mpich/7.7.9(default)
21) slurm/20.02.2-1
22) daint-gpu
23) cdt/19.08
24) EasyBuild/4.2.1
25) EasyBuild-custom/cscs
omlins@daint103:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/production> eb --show-config
#
# Current EasyBuild configuration
# (C: command line argument, D: default value, E: environment variable, F: configuration file)
#
allow-loaded-modules (F) = ddt, EasyBuild-custom, EasyBuild, xalt
buildpath (E) = /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1
containerpath (E) = /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/containers
external-modules-metadata (E) = /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/production/easybuild/cray_external_modules_metadata-19.10.cfg
hide-deps (F) = absl, ANTLR, APR, APR-util, Autoconf, Automake, Autotools, Bison, Bazel, cloudpickle, CMake, configurable-http-proxy, Coreutils, Cube, CUDA, Doxygen, Eigen, FLTK, GCCcore, GL2PS, glmnet, GLPK, GLib, GPGME, GTS, GraphicsMagick, help2man, IPython, JasPer, LLVM, LOKI, LVM2, Loki, Libassuan, LibTIFF, Libpgp-error, M4, Mako, Mesa, NASM, NASM, OPARI2, OTF2, OpenPGM, PCRE, PDT, PIL, Pillow, PyGTS, PyQt, PyYAML, PyZMQ, Python-Xlib, Python-bare, Qhull, Qt, SCOTCH, SCons, SIONlib, SIP, SIRIUS, SQLite, SWIG, Serf, Szip, Tcl, Tk, UDUNITS, X11, XZ, ZeroMQ, arpack-ng, backports.weakref, binutils, bokeh, byacc, bzip2, cairo, cURL, cuDNN, expat, flex, fontconfig, freetype, funcsigs, gc, gettext, gnuplot, go, gperf, guile, hwloc, inputproto, jemalloc, kbproto, libGLU, libgpuarray, libQGLViewer, libspatialindex, libX11, libXau, libXdmcp, libXext, libXrender, libcerf, libdrm, libevent, libffi, libgd, libiberty, libjpeg-turbo, libjpeg-turbo, libpng, libpthread-stubs, libreadline, libsodium, libtool, libunistring, libunwind, libutempter, libxcb, libxml2, libxshmfence, libyaml, make, minieigen, mock, mxml, ncurses, nettle, networkx, nodejs, nose-parameterized, numactl, parameterized, pixman, pkg-config, ploticus, popt, prereq, protobuf, protobuf-core, qrupdate, renderproto, runc, scikit-image, scikit-learn, util-linux, Werkzeug, wheel, xcb-proto, xextproto, xorg-macros, xproto, xtrans, zlib
hide-toolchains (F) = CrayCCE, CrayGNU, CrayIntel, CrayPGI, GCCcore, gmvapich2, gmvolf, foss, fosscuda, gompi
include-easyblocks (E) = /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/production/easybuild/easyblocks/*.py
installpath (E) = /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1
module-syntax (F) = Tcl
modules-tool (E) = EnvironmentModulesC
optarch (E) = haswell
packagepath (E) = /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/packages
prefix (E) = /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1
repositorypath (E) = /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/ebfiles_repo
robot-paths (E) = /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/production/easybuild/easyconfigs/, /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/production/easybuild/easyconfigs, /apps/common/UES/easybuild/software/EasyBuild/4.2.1/easybuild/easyconfigs
omlins@daint103:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/production>
Here is the log file:
omlins@daint103:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/production> cat /run/user/24345/easybuild/tmp/eb-Yx5j68/easybuild-Dycore-551f6b4-20200603.172752.aPLVW.log
== 2020-06-03 17:27:52,341 easyblock.py:280 INFO This is EasyBuild 4.2.1 (framework: 4.2.1, easyblocks: 4.2.1) on host daint103.
== 2020-06-03 17:27:52,341 easyblock.py:286 INFO This is easyblock CMakeMake from module easybuild.easyblocks.generic.cmakemake (/apps/common/UES/easybuild/software/EasyBuild/4.2.1/lib/python2.7/site-packages/easybuild/easyblocks/generic/cmakemake.py)
== 2020-06-03 17:27:52,341 easyblock.py:843 INFO Build dir set to /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/Dycore/551f6b4/CrayGNU-19.08-cuda-10.1-crclim-double
== 2020-06-03 17:27:52,341 easyblock.py:903 INFO Software install dir set to /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/Dycore/551f6b4-CrayGNU-19.08-cuda-10.1-crclim-double
== 2020-06-03 17:27:52,341 easyblock.py:908 INFO Module install dir set to /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/modules/all
== 2020-06-03 17:27:52,341 easyblock.py:265 INFO Init completed for application name Dycore version 551f6b4
== 2020-06-03 17:27:52,341 easyblock.py:3208 INFO Obtained application instance of for Dycore (easyblock: CMakeMake)
== 2020-06-03 17:27:52,342 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'MPICH'
== 2020-06-03 17:27:52,342 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'cmd': 'xxx_command_xxx', 'nr_ranks': 1})
== 2020-06-03 17:27:52,342 one.py:159 INFO Skipping reformatting value for parameter 'toolchain'
== 2020-06-03 17:27:52,342 one.py:159 INFO Skipping reformatting value for parameter 'toolchainopts'
== 2020-06-03 17:27:52,343 filetools.py:1495 INFO Creating directory /run/user/24345/easybuild/tmp/eb-Yx5j68/reprod_20200603172752_25476 (parents: True, set_gid: False, sticky: False)
== 2020-06-03 17:27:52,343 easyblock.py:3385 INFO Dumped easyconfig instance to /run/user/24345/easybuild/tmp/eb-Yx5j68/reprod_20200603172752_25476/Dycore-551f6b4-CrayGNU-19.08-cuda-10.1-crclim-double.eb
== 2020-06-03 17:27:52,343 filetools.py:1495 INFO Creating directory /run/user/24345/easybuild/tmp/eb-Yx5j68/reprod_20200603172752_25476/easyblocks (parents: True, set_gid: False, sticky: False)
== 2020-06-03 17:27:52,344 filetools.py:2014 INFO /apps/common/UES/easybuild/software/EasyBuild/4.2.1/lib/python2.7/site-packages/easybuild/easyblocks/generic/cmakemake.py copied to /run/user/24345/easybuild/tmp/eb-Yx5j68/reprod_20200603172752_25476/easyblocks/cmakemake.py
== 2020-06-03 17:27:52,344 easyblock.py:3400 INFO Dumped easyblock cmakemake.py required for reproduction to /run/user/24345/easybuild/tmp/eb-Yx5j68/reprod_20200603172752_25476/easyblocks
== 2020-06-03 17:27:52,344 filetools.py:2014 INFO /apps/common/UES/easybuild/software/EasyBuild/4.2.1/lib/python2.7/site-packages/easybuild/easyblocks/generic/configuremake.py copied to /run/user/24345/easybuild/tmp/eb-Yx5j68/reprod_20200603172752_25476/easyblocks/configuremake.py
== 2020-06-03 17:27:52,344 easyblock.py:3400 INFO Dumped easyblock configuremake.py required for reproduction to /run/user/24345/easybuild/tmp/eb-Yx5j68/reprod_20200603172752_25476/easyblocks
== 2020-06-03 17:27:52,344 easyblock.py:1635 INFO Number of iterations to perform for central part of installation procedure: 1
== 2020-06-03 17:27:52,345 build_log.py:265 INFO building and installing Dycore/551f6b4-CrayGNU-19.08-cuda-10.1-crclim-double...
== 2020-06-03 17:27:52,345 filetools.py:1597 INFO Lock /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/.locks/_apps_daint_UES_omlins_cosmo_pe1908_keepsrc_eb4.2.1_software_Dycore_551f6b4-CrayGNU-19.08-cuda-10.1-crclim-double.lock does not exist
== 2020-06-03 17:27:52,345 filetools.py:1538 INFO Creating lock at /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/.locks/_apps_daint_UES_omlins_cosmo_pe1908_keepsrc_eb4.2.1_software_Dycore_551f6b4-CrayGNU-19.08-cuda-10.1-crclim-double.lock...
== 2020-06-03 17:27:52,345 filetools.py:1495 INFO Creating directory /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/.locks/_apps_daint_UES_omlins_cosmo_pe1908_keepsrc_eb4.2.1_software_Dycore_551f6b4-CrayGNU-19.08-cuda-10.1-crclim-double.lock (parents: True, set_gid: False, sticky: False)
== 2020-06-03 17:27:52,346 filetools.py:1547 INFO Lock created: /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/.locks/_apps_daint_UES_omlins_cosmo_pe1908_keepsrc_eb4.2.1_software_Dycore_551f6b4-CrayGNU-19.08-cuda-10.1-crclim-double.lock
== 2020-06-03 17:27:52,346 build_log.py:265 INFO fetching files...
== 2020-06-03 17:27:52,346 easyblock.py:2968 INFO Starting fetch step
== 2020-06-03 17:27:52,346 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'MPICH'
== 2020-06-03 17:27:52,346 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'cmd': 'xxx_command_xxx', 'nr_ranks': 1})
== 2020-06-03 17:27:52,347 easyblock.py:2974 INFO Running method fetch_step part of step fetch
== 2020-06-03 17:27:52,347 easyblock.py:1744 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version
== 2020-06-03 17:27:52,347 tools.py:266 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /apps/common/UES/easybuild/software/EasyBuild/4.2.1/bin/eb
== 2020-06-03 17:27:52,347 tools.py:280 INFO Also considering installation prefix /apps/common/UES/easybuild/software/EasyBuild/4.2.1 (determined via path to 'eb' script)...
== 2020-06-03 17:27:52,351 easyblock.py:671 INFO Found file /apps/common/UES/easybuild/sources/d/Dycore/Dycore_551f6b4.tar.gz at /apps/common/UES/easybuild/sources/d/Dycore/Dycore_551f6b4.tar.gz
== 2020-06-03 17:27:52,351 easyblock.py:671 INFO Found file /apps/common/UES/easybuild/sources/d/Dycore/Dycore_551f6b4.tar.gz at /apps/common/UES/easybuild/sources/d/Dycore/Dycore_551f6b4.tar.gz
== 2020-06-03 17:27:52,351 easyblock.py:671 INFO Found file /apps/common/UES/easybuild/sources/d/Dycore/Dycore_551f6b4.tar.gz at /apps/common/UES/easybuild/sources/d/Dycore/Dycore_551f6b4.tar.gz
== 2020-06-03 17:27:52,351 easyblock.py:394 INFO Added sources: [{'path': '/apps/common/UES/easybuild/sources/d/Dycore/Dycore_551f6b4.tar.gz', 'cmd': None, 'finalpath': '/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/Dycore/551f6b4/CrayGNU-19.08-cuda-10.1-crclim-double', 'name': '/apps/common/UES/easybuild/sources/d/Dycore/Dycore_551f6b4.tar.gz', 'checksum': None}]
== 2020-06-03 17:27:52,351 easyblock.py:1785 INFO no patches provided
== 2020-06-03 17:27:52,424 easyblock.py:1795 INFO md5 checksum for /apps/common/UES/easybuild/sources/d/Dycore/Dycore_551f6b4.tar.gz: 9e6ee432258501c4dd8f25e8bacc051c
== 2020-06-03 17:27:52,428 easyblock.py:1795 INFO sha256 checksum for /apps/common/UES/easybuild/sources/d/Dycore/Dycore_551f6b4.tar.gz: a81d4c2223c97e5d6f924c34e6852e1e386ce7a38de635f3a7bc05515ea94a9f
== 2020-06-03 17:27:52,429 easyblock.py:1830 INFO Checking dirs that need to be created: ['/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/Dycore/551f6b4-CrayGNU-19.08-cuda-10.1-crclim-double', '/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/modules/all/Dycore', '/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/modules/devel/Dycore']
== 2020-06-03 17:27:52,429 filetools.py:1495 INFO Creating directory /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/Dycore/551f6b4-CrayGNU-19.08-cuda-10.1-crclim-double (parents: True, set_gid: False, sticky: False)
== 2020-06-03 17:27:52,430 filetools.py:1495 INFO Creating directory /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/modules/all/Dycore (parents: True, set_gid: False, sticky: False)
== 2020-06-03 17:27:52,430 filetools.py:1495 INFO Creating directory /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/modules/devel/Dycore (parents: True, set_gid: False, sticky: False)
== 2020-06-03 17:27:52,431 configuremake.py:93 INFO config.guess version: 2018-08-29 (last updated: 2020-05-25T16:05:49.317540, SHA256 checksum: c02eb9cc55c86cfd1e9a794e548d25db5c9539e7b2154beb649bc6e2cbffc74c)
== 2020-06-03 17:27:52,431 configuremake.py:148 INFO Found config.guess at /apps/common/easybuild/sources/generic/eb_v4.2.1/ConfigureMake/config.guess
== 2020-06-03 17:27:52,431 build_log.py:265 INFO creating build dir, resetting environment...
== 2020-06-03 17:27:52,431 easyblock.py:2968 INFO Starting ready step
== 2020-06-03 17:27:52,431 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'MPICH'
== 2020-06-03 17:27:52,431 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'cmd': 'xxx_command_xxx', 'nr_ranks': 1})
== 2020-06-03 17:27:52,431 easyblock.py:2974 INFO Running method check_readiness_step part of step ready
== 2020-06-03 17:27:52,441 easyblock.py:1654 INFO Setting parallelism: 20
== 2020-06-03 17:27:52,456 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /opt/cray/pe/papi/5.7.0.1/lib64:/opt/cray/job/2.2.4-7.0.1.1_3.8__g36b56f4.ari/lib64:/users/omlins/.mujoco/mujoco200/bin (previous value: '/opt/cray/pe/papi/5.7.0.1/lib64:/opt/cray/job/2.2.4-7.0.1.1_3.8__g36b56f4.ari/lib64:/users/omlins/.mujoco/mujoco200/bin')
== 2020-06-03 17:27:52,456 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2020-06-03 17:27:52,456 easyblock.py:1693 WARNING Loaded modules detected: ['modules/3.2.11.2', 'cce/9.0.1', 'craype-haswell', 'craype-network-aries', 'craype/2.6.0', 'cray-libsci/19.06.1', 'udreg/2.3.2-7.0.1.1_3.9__g8175d3d.ari', 'ugni/6.0.14.0-7.0.1.1_7.10__ge78e5b0.ari', 'pmi/5.0.14', 'dmapp/7.1.1-7.0.1.1_4.8__g38cf134.ari', 'gni-headers/5.0.12.0-7.0.1.1_6.7__g3b1768f.ari', 'xpmem/2.2.19-7.0.1.1_3.7__gdcf436c.ari', 'job/2.2.4-7.0.1.1_3.8__g36b56f4.ari', 'dvs/2.12_2.2.151-7.0.1.1_5.6__g7eb5e703', 'alps/6.6.56-7.0.1.1_4.10__g2e60a7e4.ari', 'rca/2.2.20-7.0.1.1_4.9__g8e3fb5b.ari', 'atp/2.1.3', 'perftools-base/7.1.0', 'PrgEnv-cray/6.0.5', 'cray-mpich/7.7.9', 'slurm/20.02.2-1', 'daint-gpu', 'cdt/19.08', 'EasyBuild/4.2.1', 'EasyBuild-custom/cscs']
== 2020-06-03 17:27:52,456 easyblock.py:2974 INFO Running method make_builddir part of step ready
== 2020-06-03 17:27:52,457 filetools.py:1495 INFO Creating directory /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/Dycore/551f6b4/CrayGNU-19.08-cuda-10.1-crclim-double (parents: True, set_gid: False, sticky: False)
== 2020-06-03 17:27:52,457 easyblock.py:2974 INFO Running method reset_env part of step ready
== 2020-06-03 17:27:52,458 easyblock.py:2974 INFO Running method handle_iterate_opts part of step ready
== 2020-06-03 17:27:52,459 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'MPICH'
== 2020-06-03 17:27:52,459 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'cmd': 'xxx_command_xxx', 'nr_ranks': 1})
== 2020-06-03 17:27:52,459 build_log.py:265 INFO unpacking...
== 2020-06-03 17:27:52,459 easyblock.py:2968 INFO Starting source step
== 2020-06-03 17:27:52,459 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'MPICH'
== 2020-06-03 17:27:52,459 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'cmd': 'xxx_command_xxx', 'nr_ranks': 1})
== 2020-06-03 17:27:52,459 easyblock.py:2974 INFO Running method checksum_step part of step source
== 2020-06-03 17:27:52,459 easyblock.py:1846 INFO Checksum verification for /apps/common/UES/easybuild/sources/d/Dycore/Dycore_551f6b4.tar.gz using None passed.
== 2020-06-03 17:27:52,460 easyblock.py:2974 INFO Running method extract_step part of step source
== 2020-06-03 17:27:52,460 easyblock.py:1933 INFO Unpacking source /apps/common/UES/easybuild/sources/d/Dycore/Dycore_551f6b4.tar.gz
== 2020-06-03 17:27:52,460 run.py:222 INFO running cmd: tar xzf /apps/common/UES/easybuild/sources/d/Dycore/Dycore_551f6b4.tar.gz
== 2020-06-03 17:27:53,075 build_log.py:265 INFO patching...
== 2020-06-03 17:27:53,075 easyblock.py:2968 INFO Starting patch step
== 2020-06-03 17:27:53,076 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'MPICH'
== 2020-06-03 17:27:53,076 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'cmd': 'xxx_command_xxx', 'nr_ranks': 1})
== 2020-06-03 17:27:53,076 easyblock.py:2974 INFO Running method patch_step part of step patch
== 2020-06-03 17:27:53,076 build_log.py:265 INFO preparing...
== 2020-06-03 17:27:53,076 easyblock.py:2968 INFO Starting prepare step
== 2020-06-03 17:27:53,076 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'MPICH'
== 2020-06-03 17:27:53,076 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'cmd': 'xxx_command_xxx', 'nr_ranks': 1})
== 2020-06-03 17:27:53,077 easyblock.py:2974 INFO Running method prepare_step part of step prepare
== 2020-06-03 17:27:53,275 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /opt/cray/pe/papi/5.7.0.1/lib64:/opt/cray/job/2.2.4-7.0.1.1_3.8__g36b56f4.ari/lib64:/users/omlins/.mujoco/mujoco200/bin (previous value: '/opt/cray/pe/papi/5.7.0.1/lib64:/opt/cray/job/2.2.4-7.0.1.1_3.8__g36b56f4.ari/lib64:/users/omlins/.mujoco/mujoco200/bin')
== 2020-06-03 17:27:53,275 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2020-06-03 17:27:53,321 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /opt/cray/pe/papi/5.7.0.1/lib64:/opt/cray/job/2.2.4-7.0.1.1_3.8__g36b56f4.ari/lib64:/users/omlins/.mujoco/mujoco200/bin (previous value: '/opt/cray/pe/papi/5.7.0.1/lib64:/opt/cray/job/2.2.4-7.0.1.1_3.8__g36b56f4.ari/lib64:/users/omlins/.mujoco/mujoco200/bin')
== 2020-06-03 17:27:53,322 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2020-06-03 17:27:54,353 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /opt/gcc/8.3.0/snos/lib64:/opt/cray/pe/papi/5.7.0.1/lib64:/opt/cray/job/2.2.4-7.0.1.1_3.8__g36b56f4.ari/lib64:/users/omlins/.mujoco/mujoco200/bin (previous value: '/opt/cray/pe/papi/5.7.0.1/lib64:/opt/cray/job/2.2.4-7.0.1.1_3.8__g36b56f4.ari/lib64:/opt/gcc/8.3.0/snos/lib64:/users/omlins/.mujoco/mujoco200/bin')
== 2020-06-03 17:27:54,353 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2020-06-03 17:27:54,366 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /opt/gcc/8.3.0/snos/lib64:/opt/cray/pe/papi/5.7.0.1/lib64:/opt/cray/job/2.2.4-7.0.1.1_3.8__g36b56f4.ari/lib64:/users/omlins/.mujoco/mujoco200/bin (previous value: '/opt/gcc/8.3.0/snos/lib64:/opt/cray/pe/papi/5.7.0.1/lib64:/opt/cray/job/2.2.4-7.0.1.1_3.8__g36b56f4.ari/lib64:/users/omlins/.mujoco/mujoco200/bin')
== 2020-06-03 17:27:54,367 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2020-06-03 17:27:54,388 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /opt/gcc/8.3.0/snos/lib64:/opt/cray/pe/papi/5.7.0.1/lib64:/opt/cray/job/2.2.4-7.0.1.1_3.8__g36b56f4.ari/lib64:/users/omlins/.mujoco/mujoco200/bin (previous value: '/opt/gcc/8.3.0/snos/lib64:/opt/cray/pe/papi/5.7.0.1/lib64:/opt/cray/job/2.2.4-7.0.1.1_3.8__g36b56f4.ari/lib64:/users/omlins/.mujoco/mujoco200/bin')
== 2020-06-03 17:27:54,389 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2020-06-03 17:27:54,414 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /opt/gcc/8.3.0/snos/lib64:/opt/cray/pe/papi/5.7.0.1/lib64:/opt/cray/job/2.2.4-7.0.1.1_3.8__g36b56f4.ari/lib64:/users/omlins/.mujoco/mujoco200/bin (previous value: '/opt/gcc/8.3.0/snos/lib64:/opt/cray/pe/papi/5.7.0.1/lib64:/opt/cray/job/2.2.4-7.0.1.1_3.8__g36b56f4.ari/lib64:/users/omlins/.mujoco/mujoco200/bin')
== 2020-06-03 17:27:54,415 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2020-06-03 17:27:54,449 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /opt/gcc/8.3.0/snos/lib64:/opt/cray/pe/papi/5.7.0.1/lib64:/opt/cray/job/2.2.4-7.0.1.1_3.8__g36b56f4.ari/lib64:/users/omlins/.mujoco/mujoco200/bin (previous value: '/opt/gcc/8.3.0/snos/lib64:/opt/cray/pe/papi/5.7.0.1/lib64:/opt/cray/job/2.2.4-7.0.1.1_3.8__g36b56f4.ari/lib64:/users/omlins/.mujoco/mujoco200/bin')
== 2020-06-03 17:27:54,450 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2020-06-03 17:27:54,551 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/STELLA/4a5f9c5-CrayGNU-19.08-crclim-double/lib:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/Boost/1.67.0-CrayGNU-19.08/lib:/opt/cray/pe/libsci_acc/19.10.1/GNU/7.1/x86_64/lib:/opt/nvidia/cudatoolkit10/10.1.105_3.27-7.0.1.1_4.1__ga311ce7/lib64:/opt/nvidia/cudatoolkit10/10.1.105_3.27-7.0.1.1_4.1__ga311ce7/extras/CUPTI/lib64:/opt/cray/pe/mpt/7.7.9/gni/mpich-gnu/8.2/lib:/opt/cray/pe/perftools/7.1.0/lib64:/opt/cray/rca/2.2.20-7.0.1.1_4.9__g8e3fb5b.ari/lib64:/opt/cray/alps/6.6.56-7.0.1.1_4.10__g2e60a7e4.ari/lib64:/opt/cray/xpmem/2.2.19-7.0.1.1_3.7__gdcf436c.ari/lib64:/opt/cray/dmapp/7.1.1-7.0.1.1_4.8__g38cf134.ari/lib64:/opt/cray/pe/pmi/5.0.14/lib64:/opt/cray/ugni/6.0.14.0-7.0.1.1_7.10__ge78e5b0.ari/lib64:/opt/cray/udreg/2.3.2-7.0.1.1_3.9__g8175d3d.ari/lib64:/opt/cray/pe/libsci/19.06.1/GNU/8.1/x86_64/lib:/apps/daint/UES/jenkins/7.0.UP01/gpu/easybuild/software/zlib/1.2.11/lib:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/bzip2/1.0.6-CrayGNU-19.08/lib:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/Serialbox/2.4.1-CrayGNU-19.08/lib:/opt/gcc/8.3.0/snos/lib64:/opt/cray/pe/papi/5.7.0.1/lib64:/opt/cray/job/2.2.4-7.0.1.1_3.8__g36b56f4.ari/lib64:/users/omlins/.mujoco/mujoco200/bin (previous value: '/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/STELLA/4a5f9c5-CrayGNU-19.08-crclim-double/lib:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/Boost/1.67.0-CrayGNU-19.08/lib:/opt/cray/pe/libsci_acc/19.10.1/GNU/7.1/x86_64/lib:/opt/nvidia/cudatoolkit10/10.1.105_3.27-7.0.1.1_4.1__ga311ce7/lib64:/opt/nvidia/cudatoolkit10/10.1.105_3.27-7.0.1.1_4.1__ga311ce7/extras/CUPTI/lib64:/opt/cray/pe/mpt/7.7.9/gni/mpich-gnu/8.2/lib:/opt/cray/pe/perftools/7.1.0/lib64:/opt/cray/rca/2.2.20-7.0.1.1_4.9__g8e3fb5b.ari/lib64:/opt/cray/alps/6.6.56-7.0.1.1_4.10__g2e60a7e4.ari/lib64:/opt/cray/xpmem/2.2.19-7.0.1.1_3.7__gdcf436c.ari/lib64:/opt/cray/dmapp/7.1.1-7.0.1.1_4.8__g38cf134.ari/lib64:/opt/cray/pe/pmi/5.0.14/lib64:/opt/cray/ugni/6.0.14.0-7.0.1.1_7.10__ge78e5b0.ari/lib64:/opt/cray/udreg/2.3.2-7.0.1.1_3.9__g8175d3d.ari/lib64:/opt/cray/pe/libsci/19.06.1/GNU/8.1/x86_64/lib:/apps/daint/UES/jenkins/7.0.UP01/gpu/easybuild/software/zlib/1.2.11/lib:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/bzip2/1.0.6-CrayGNU-19.08/lib:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/Serialbox/2.4.1-CrayGNU-19.08/lib:/opt/cray/pe/papi/5.7.0.1/lib64:/opt/cray/job/2.2.4-7.0.1.1_3.8__g36b56f4.ari/lib64:/users/omlins/.mujoco/mujoco200/bin')
== 2020-06-03 17:27:54,552 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2020-06-03 17:27:54,552 environment.py:97 INFO Environment variable EBROOTCUDA set to /opt/nvidia/cudatoolkit10/10.1.105_3.27-7.0.1.1_4.1__ga311ce7 (previously undefined)
== 2020-06-03 17:27:54,552 environment.py:97 INFO Environment variable EBVERSIONCUDA set to 10.1.105_3.27-7.0.1.1_4.1__ga311ce7 (previously undefined)
== 2020-06-03 17:27:54,569 toolchain.py:703 INFO List of toolchain dependency modules and toolchain definition match!
== 2020-06-03 17:27:54,599 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/STELLA/4a5f9c5-CrayGNU-19.08-crclim-double/lib:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/Boost/1.67.0-CrayGNU-19.08/lib:/opt/cray/pe/libsci_acc/19.10.1/GNU/7.1/x86_64/lib:/opt/nvidia/cudatoolkit10/10.1.105_3.27-7.0.1.1_4.1__ga311ce7/lib64:/opt/nvidia/cudatoolkit10/10.1.105_3.27-7.0.1.1_4.1__ga311ce7/extras/CUPTI/lib64:/opt/cray/pe/mpt/7.7.9/gni/mpich-gnu/8.2/lib:/opt/cray/pe/perftools/7.1.0/lib64:/opt/cray/rca/2.2.20-7.0.1.1_4.9__g8e3fb5b.ari/lib64:/opt/cray/alps/6.6.56-7.0.1.1_4.10__g2e60a7e4.ari/lib64:/opt/cray/xpmem/2.2.19-7.0.1.1_3.7__gdcf436c.ari/lib64:/opt/cray/dmapp/7.1.1-7.0.1.1_4.8__g38cf134.ari/lib64:/opt/cray/pe/pmi/5.0.14/lib64:/opt/cray/ugni/6.0.14.0-7.0.1.1_7.10__ge78e5b0.ari/lib64:/opt/cray/udreg/2.3.2-7.0.1.1_3.9__g8175d3d.ari/lib64:/opt/cray/pe/libsci/19.06.1/GNU/8.1/x86_64/lib:/apps/daint/UES/jenkins/7.0.UP01/gpu/easybuild/software/zlib/1.2.11/lib:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/bzip2/1.0.6-CrayGNU-19.08/lib:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/Serialbox/2.4.1-CrayGNU-19.08/lib:/opt/gcc/8.3.0/snos/lib64:/opt/cray/pe/papi/5.7.0.1/lib64:/opt/cray/job/2.2.4-7.0.1.1_3.8__g36b56f4.ari/lib64:/users/omlins/.mujoco/mujoco200/bin (previous value: '/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/STELLA/4a5f9c5-CrayGNU-19.08-crclim-double/lib:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/Boost/1.67.0-CrayGNU-19.08/lib:/opt/cray/pe/libsci_acc/19.10.1/GNU/7.1/x86_64/lib:/opt/nvidia/cudatoolkit10/10.1.105_3.27-7.0.1.1_4.1__ga311ce7/lib64:/opt/nvidia/cudatoolkit10/10.1.105_3.27-7.0.1.1_4.1__ga311ce7/extras/CUPTI/lib64:/opt/cray/pe/mpt/7.7.9/gni/mpich-gnu/8.2/lib:/opt/cray/pe/perftools/7.1.0/lib64:/opt/cray/rca/2.2.20-7.0.1.1_4.9__g8e3fb5b.ari/lib64:/opt/cray/alps/6.6.56-7.0.1.1_4.10__g2e60a7e4.ari/lib64:/opt/cray/xpmem/2.2.19-7.0.1.1_3.7__gdcf436c.ari/lib64:/opt/cray/dmapp/7.1.1-7.0.1.1_4.8__g38cf134.ari/lib64:/opt/cray/pe/pmi/5.0.14/lib64:/opt/cray/ugni/6.0.14.0-7.0.1.1_7.10__ge78e5b0.ari/lib64:/opt/cray/udreg/2.3.2-7.0.1.1_3.9__g8175d3d.ari/lib64:/opt/cray/pe/libsci/19.06.1/GNU/8.1/x86_64/lib:/apps/daint/UES/jenkins/7.0.UP01/gpu/easybuild/software/zlib/1.2.11/lib:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/bzip2/1.0.6-CrayGNU-19.08/lib:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/Serialbox/2.4.1-CrayGNU-19.08/lib:/opt/gcc/8.3.0/snos/lib64:/opt/cray/pe/papi/5.7.0.1/lib64:/opt/cray/job/2.2.4-7.0.1.1_3.8__g36b56f4.ari/lib64:/users/omlins/.mujoco/mujoco200/bin')
== 2020-06-03 17:27:54,599 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2020-06-03 17:27:54,615 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/STELLA/4a5f9c5-CrayGNU-19.08-crclim-double/lib:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/Boost/1.67.0-CrayGNU-19.08/lib:/opt/cray/pe/libsci_acc/19.10.1/GNU/7.1/x86_64/lib:/opt/nvidia/cudatoolkit10/10.1.105_3.27-7.0.1.1_4.1__ga311ce7/lib64:/opt/nvidia/cudatoolkit10/10.1.105_3.27-7.0.1.1_4.1__ga311ce7/extras/CUPTI/lib64:/opt/cray/pe/mpt/7.7.9/gni/mpich-gnu/8.2/lib:/opt/cray/pe/perftools/7.1.0/lib64:/opt/cray/rca/2.2.20-7.0.1.1_4.9__g8e3fb5b.ari/lib64:/opt/cray/alps/6.6.56-7.0.1.1_4.10__g2e60a7e4.ari/lib64:/opt/cray/xpmem/2.2.19-7.0.1.1_3.7__gdcf436c.ari/lib64:/opt/cray/dmapp/7.1.1-7.0.1.1_4.8__g38cf134.ari/lib64:/opt/cray/pe/pmi/5.0.14/lib64:/opt/cray/ugni/6.0.14.0-7.0.1.1_7.10__ge78e5b0.ari/lib64:/opt/cray/udreg/2.3.2-7.0.1.1_3.9__g8175d3d.ari/lib64:/opt/cray/pe/libsci/19.06.1/GNU/8.1/x86_64/lib:/apps/daint/UES/jenkins/7.0.UP01/gpu/easybuild/software/zlib/1.2.11/lib:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/bzip2/1.0.6-CrayGNU-19.08/lib:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/Serialbox/2.4.1-CrayGNU-19.08/lib:/opt/gcc/8.3.0/snos/lib64:/opt/cray/pe/papi/5.7.0.1/lib64:/opt/cray/job/2.2.4-7.0.1.1_3.8__g36b56f4.ari/lib64:/users/omlins/.mujoco/mujoco200/bin (previous value: '/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/STELLA/4a5f9c5-CrayGNU-19.08-crclim-double/lib:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/Boost/1.67.0-CrayGNU-19.08/lib:/opt/cray/pe/libsci_acc/19.10.1/GNU/7.1/x86_64/lib:/opt/nvidia/cudatoolkit10/10.1.105_3.27-7.0.1.1_4.1__ga311ce7/lib64:/opt/nvidia/cudatoolkit10/10.1.105_3.27-7.0.1.1_4.1__ga311ce7/extras/CUPTI/lib64:/opt/cray/pe/mpt/7.7.9/gni/mpich-gnu/8.2/lib:/opt/cray/pe/perftools/7.1.0/lib64:/opt/cray/rca/2.2.20-7.0.1.1_4.9__g8e3fb5b.ari/lib64:/opt/cray/alps/6.6.56-7.0.1.1_4.10__g2e60a7e4.ari/lib64:/opt/cray/xpmem/2.2.19-7.0.1.1_3.7__gdcf436c.ari/lib64:/opt/cray/dmapp/7.1.1-7.0.1.1_4.8__g38cf134.ari/lib64:/opt/cray/pe/pmi/5.0.14/lib64:/opt/cray/ugni/6.0.14.0-7.0.1.1_7.10__ge78e5b0.ari/lib64:/opt/cray/udreg/2.3.2-7.0.1.1_3.9__g8175d3d.ari/lib64:/opt/cray/pe/libsci/19.06.1/GNU/8.1/x86_64/lib:/apps/daint/UES/jenkins/7.0.UP01/gpu/easybuild/software/zlib/1.2.11/lib:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/bzip2/1.0.6-CrayGNU-19.08/lib:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/Serialbox/2.4.1-CrayGNU-19.08/lib:/opt/gcc/8.3.0/snos/lib64:/opt/cray/pe/papi/5.7.0.1/lib64:/opt/cray/job/2.2.4-7.0.1.1_3.8__g36b56f4.ari/lib64:/users/omlins/.mujoco/mujoco200/bin')
== 2020-06-03 17:27:54,615 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2020-06-03 17:27:54,619 variables.py:201 WARNING flags_for_subdirs: directory /opt/cray/pe/libsci/19.06.1/GNU/8.1/x86_64/lib64 was not found
== 2020-06-03 17:27:54,622 variables.py:201 WARNING flags_for_subdirs: directory /opt/cray/pe/libsci/19.06.1/GNU/8.1/x86_64/lib64 was not found
== 2020-06-03 17:27:54,622 variables.py:201 WARNING flags_for_subdirs: directory /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/CMake/3.12.0/include was not found
== 2020-06-03 17:27:54,622 variables.py:201 WARNING flags_for_subdirs: directory /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/CMake/3.12.0/lib64 was not found
== 2020-06-03 17:27:54,622 variables.py:201 WARNING flags_for_subdirs: directory /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/CMake/3.12.0/lib was not found
== 2020-06-03 17:27:54,622 variables.py:201 WARNING flags_for_subdirs: directory /opt/nvidia/cudatoolkit10/10.1.105_3.27-7.0.1.1_4.1__ga311ce7/lib was not found
== 2020-06-03 17:27:54,622 variables.py:201 WARNING flags_for_subdirs: directory /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/STELLA/4a5f9c5-CrayGNU-19.08-crclim-double/lib64 was not found
== 2020-06-03 17:27:54,624 environment.py:97 INFO Environment variable BLAS_INC_DIR set to /opt/cray/pe/libsci/19.06.1/GNU/8.1/x86_64/include (previously undefined)
== 2020-06-03 17:27:54,624 environment.py:97 INFO Environment variable EBVARBLAS_INC_DIR set to /opt/cray/pe/libsci/19.06.1/GNU/8.1/x86_64/include (previously undefined)
== 2020-06-03 17:27:54,624 environment.py:97 INFO Environment variable BLAS_LAPACK_INC_DIR set to /opt/cray/pe/libsci/19.06.1/GNU/8.1/x86_64/include (previously undefined)
== 2020-06-03 17:27:54,624 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /opt/cray/pe/libsci/19.06.1/GNU/8.1/x86_64/include (previously undefined)
== 2020-06-03 17:27:54,624 environment.py:97 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /opt/cray/pe/libsci/19.06.1/GNU/8.1/x86_64/lib (previously undefined)
== 2020-06-03 17:27:54,624 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /opt/cray/pe/libsci/19.06.1/GNU/8.1/x86_64/lib (previously undefined)
== 2020-06-03 17:27:54,624 environment.py:97 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to (previously undefined)
== 2020-06-03 17:27:54,624 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to (previously undefined)
== 2020-06-03 17:27:54,625 environment.py:97 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to (previously undefined)
== 2020-06-03 17:27:54,625 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to (previously undefined)
== 2020-06-03 17:27:54,625 environment.py:97 INFO Environment variable BLAS_LIB_DIR set to /opt/cray/pe/libsci/19.06.1/GNU/8.1/x86_64/lib (previously undefined)
== 2020-06-03 17:27:54,625 environment.py:97 INFO Environment variable EBVARBLAS_LIB_DIR set to /opt/cray/pe/libsci/19.06.1/GNU/8.1/x86_64/lib (previously undefined)
== 2020-06-03 17:27:54,625 environment.py:97 INFO Environment variable BLAS_MT_STATIC_LIBS set to (previously undefined)
== 2020-06-03 17:27:54,625 environment.py:97 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to (previously undefined)
== 2020-06-03 17:27:54,625 environment.py:97 INFO Environment variable BLAS_STATIC_LIBS set to (previously undefined)
== 2020-06-03 17:27:54,625 environment.py:97 INFO Environment variable EBVARBLAS_STATIC_LIBS set to (previously undefined)
== 2020-06-03 17:27:54,625 environment.py:97 INFO Environment variable CC set to cc (previously undefined)
== 2020-06-03 17:27:54,625 environment.py:97 INFO Environment variable EBVARCC set to cc (previously undefined)
== 2020-06-03 17:27:54,625 environment.py:97 INFO Environment variable CFLAGS set to -O2 -fno-math-errno (previously undefined)
== 2020-06-03 17:27:54,625 environment.py:97 INFO Environment variable EBVARCFLAGS set to -O2 -fno-math-errno (previously undefined)
== 2020-06-03 17:27:54,626 environment.py:97 INFO Environment variable CPPFLAGS set to -I/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/STELLA/4a5f9c5-CrayGNU-19.08-crclim-double/include -I/opt/nvidia/cudatoolkit10/10.1.105_3.27-7.0.1.1_4.1__ga311ce7/include -I/opt/cray/pe/libsci/19.06.1/GNU/8.1/x86_64/include (previously undefined)
== 2020-06-03 17:27:54,626 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/STELLA/4a5f9c5-CrayGNU-19.08-crclim-double/include -I/opt/nvidia/cudatoolkit10/10.1.105_3.27-7.0.1.1_4.1__ga311ce7/include -I/opt/cray/pe/libsci/19.06.1/GNU/8.1/x86_64/include (previously undefined)
== 2020-06-03 17:27:54,626 environment.py:97 INFO Environment variable CXX set to CC (previously undefined)
== 2020-06-03 17:27:54,626 environment.py:97 INFO Environment variable EBVARCXX set to CC (previously undefined)
== 2020-06-03 17:27:54,626 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -fno-math-errno (previously undefined)
== 2020-06-03 17:27:54,626 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -fno-math-errno (previously undefined)
== 2020-06-03 17:27:54,626 environment.py:97 INFO Environment variable F77 set to ftn (previously undefined)
== 2020-06-03 17:27:54,626 environment.py:97 INFO Environment variable EBVARF77 set to ftn (previously undefined)
== 2020-06-03 17:27:54,626 environment.py:97 INFO Environment variable F90 set to ftn (previously undefined)
== 2020-06-03 17:27:54,626 environment.py:97 INFO Environment variable EBVARF90 set to ftn (previously undefined)
== 2020-06-03 17:27:54,626 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -fno-math-errno (previously undefined)
== 2020-06-03 17:27:54,626 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -fno-math-errno (previously undefined)
== 2020-06-03 17:27:54,627 environment.py:97 INFO Environment variable FC set to ftn (previously undefined)
== 2020-06-03 17:27:54,627 environment.py:97 INFO Environment variable EBVARFC set to ftn (previously undefined)
== 2020-06-03 17:27:54,627 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -fno-math-errno (previously undefined)
== 2020-06-03 17:27:54,627 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -fno-math-errno (previously undefined)
== 2020-06-03 17:27:54,627 environment.py:97 INFO Environment variable FFLAGS set to -O2 -fno-math-errno (previously undefined)
== 2020-06-03 17:27:54,627 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -fno-math-errno (previously undefined)
== 2020-06-03 17:27:54,627 environment.py:97 INFO Environment variable LAPACK_INC_DIR set to /opt/cray/pe/libsci/19.06.1/GNU/8.1/x86_64/include (previously undefined)
== 2020-06-03 17:27:54,627 environment.py:97 INFO Environment variable EBVARLAPACK_INC_DIR set to /opt/cray/pe/libsci/19.06.1/GNU/8.1/x86_64/include (previously undefined)
== 2020-06-03 17:27:54,627 environment.py:97 INFO Environment variable LAPACK_LIB_DIR set to /opt/cray/pe/libsci/19.06.1/GNU/8.1/x86_64/lib (previously undefined)
== 2020-06-03 17:27:54,627 environment.py:97 INFO Environment variable EBVARLAPACK_LIB_DIR set to /opt/cray/pe/libsci/19.06.1/GNU/8.1/x86_64/lib (previously undefined)
== 2020-06-03 17:27:54,627 environment.py:97 INFO Environment variable LAPACK_MT_STATIC_LIBS set to (previously undefined)
== 2020-06-03 17:27:54,627 environment.py:97 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to (previously undefined)
== 2020-06-03 17:27:54,627 environment.py:97 INFO Environment variable LAPACK_STATIC_LIBS set to (previously undefined)
== 2020-06-03 17:27:54,628 environment.py:97 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to (previously undefined)
== 2020-06-03 17:27:54,628 environment.py:97 INFO Environment variable LDFLAGS set to -L/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/STELLA/4a5f9c5-CrayGNU-19.08-crclim-double/lib -L/opt/nvidia/cudatoolkit10/10.1.105_3.27-7.0.1.1_4.1__ga311ce7/lib64 -L/opt/cray/pe/libsci/19.06.1/GNU/8.1/x86_64/lib (previously undefined)
== 2020-06-03 17:27:54,628 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/STELLA/4a5f9c5-CrayGNU-19.08-crclim-double/lib -L/opt/nvidia/cudatoolkit10/10.1.105_3.27-7.0.1.1_4.1__ga311ce7/lib64 -L/opt/cray/pe/libsci/19.06.1/GNU/8.1/x86_64/lib (previously undefined)
== 2020-06-03 17:27:54,628 environment.py:97 INFO Environment variable LIBBLAS set to (previously undefined)
== 2020-06-03 17:27:54,628 environment.py:97 INFO Environment variable EBVARLIBBLAS set to (previously undefined)
== 2020-06-03 17:27:54,628 environment.py:97 INFO Environment variable LIBBLAS_MT set to (previously undefined)
== 2020-06-03 17:27:54,628 environment.py:97 INFO Environment variable EBVARLIBBLAS_MT set to (previously undefined)
== 2020-06-03 17:27:54,628 environment.py:97 INFO Environment variable LIBLAPACK set to (previously undefined)
== 2020-06-03 17:27:54,628 environment.py:97 INFO Environment variable EBVARLIBLAPACK set to (previously undefined)
== 2020-06-03 17:27:54,628 environment.py:97 INFO Environment variable LIBLAPACK_MT set to (previously undefined)
== 2020-06-03 17:27:54,628 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT set to (previously undefined)
== 2020-06-03 17:27:54,628 environment.py:97 INFO Environment variable LIBLAPACK_MT_ONLY set to (previously undefined)
== 2020-06-03 17:27:54,628 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to (previously undefined)
== 2020-06-03 17:27:54,629 environment.py:97 INFO Environment variable LIBLAPACK_ONLY set to (previously undefined)
== 2020-06-03 17:27:54,629 environment.py:97 INFO Environment variable EBVARLIBLAPACK_ONLY set to (previously undefined)
== 2020-06-03 17:27:54,629 environment.py:97 INFO Environment variable MPICC set to cc (previously undefined)
== 2020-06-03 17:27:54,629 environment.py:97 INFO Environment variable EBVARMPICC set to cc (previously undefined)
== 2020-06-03 17:27:54,629 environment.py:97 INFO Environment variable MPICXX set to CC (previously undefined)
== 2020-06-03 17:27:54,629 environment.py:97 INFO Environment variable EBVARMPICXX set to CC (previously undefined)
== 2020-06-03 17:27:54,629 environment.py:97 INFO Environment variable MPIF77 set to ftn (previously undefined)
== 2020-06-03 17:27:54,629 environment.py:97 INFO Environment variable EBVARMPIF77 set to ftn (previously undefined)
== 2020-06-03 17:27:54,629 environment.py:97 INFO Environment variable MPIF90 set to ftn (previously undefined)
== 2020-06-03 17:27:54,629 environment.py:97 INFO Environment variable EBVARMPIF90 set to ftn (previously undefined)
== 2020-06-03 17:27:54,629 environment.py:97 INFO Environment variable MPIFC set to ftn (previously undefined)
== 2020-06-03 17:27:54,629 environment.py:97 INFO Environment variable EBVARMPIFC set to ftn (previously undefined)
== 2020-06-03 17:27:54,630 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 (previously undefined)
== 2020-06-03 17:27:54,630 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 (previously undefined)
== 2020-06-03 17:27:54,630 environment.py:97 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined)
== 2020-06-03 17:27:54,630 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined)
== 2020-06-03 17:27:54,630 environment.py:97 INFO Environment variable CRAYPE_LINK_TYPE set to dynamic (previous value: 'dynamic')
== 2020-06-03 17:27:54,630 easyblock.py:1554 INFO Using /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/Dycore/551f6b4/CrayGNU-19.08-cuda-10.1-crclim-double/ as start dir
== 2020-06-03 17:27:54,630 build_log.py:265 INFO configuring...
== 2020-06-03 17:27:54,630 easyblock.py:2968 INFO Starting configure step
== 2020-06-03 17:27:54,631 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'MPICH'
== 2020-06-03 17:27:54,631 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'cmd': 'xxx_command_xxx', 'nr_ranks': 1})
== 2020-06-03 17:27:54,631 easyblock.py:2974 INFO Running method configure_step part of step configure
== 2020-06-03 17:27:54,631 environment.py:97 INFO Environment variable CMAKE_INCLUDE_PATH set to /opt/cray/pe/libsci/19.06.1/GNU/8.1/x86_64/include:/opt/nvidia/cudatoolkit10/10.1.105_3.27-7.0.1.1_4.1__ga311ce7/include:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/STELLA/4a5f9c5-CrayGNU-19.08-crclim-double/include:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/Boost/1.67.0-CrayGNU-19.08/include:/apps/daint/UES/jenkins/7.0.UP01/gpu/easybuild/software/zlib/1.2.11/include:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/bzip2/1.0.6-CrayGNU-19.08/include:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/Serialbox/2.4.1-CrayGNU-19.08/include (previously undefined)
== 2020-06-03 17:27:54,631 environment.py:97 INFO Environment variable CMAKE_LIBRARY_PATH set to /opt/cray/pe/libsci/19.06.1/GNU/8.1/x86_64/lib:/opt/nvidia/cudatoolkit10/10.1.105_3.27-7.0.1.1_4.1__ga311ce7/lib64:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/STELLA/4a5f9c5-CrayGNU-19.08-crclim-double/lib:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/Boost/1.67.0-CrayGNU-19.08/lib:/opt/cray/pe/libsci_acc/19.10.1/GNU/7.1/x86_64/lib:/opt/nvidia/cudatoolkit10/10.1.105_3.27-7.0.1.1_4.1__ga311ce7/extras/CUPTI/lib64:/opt/cray/pe/mpt/7.7.9/gni/mpich-gnu/8.2/lib:/opt/cray/pe/perftools/7.1.0/lib64:/opt/cray/rca/2.2.20-7.0.1.1_4.9__g8e3fb5b.ari/lib64:/opt/cray/alps/6.6.56-7.0.1.1_4.10__g2e60a7e4.ari/lib64:/opt/cray/xpmem/2.2.19-7.0.1.1_3.7__gdcf436c.ari/lib64:/opt/cray/dmapp/7.1.1-7.0.1.1_4.8__g38cf134.ari/lib64:/opt/cray/pe/pmi/5.0.14/lib64:/opt/cray/ugni/6.0.14.0-7.0.1.1_7.10__ge78e5b0.ari/lib64:/opt/cray/udreg/2.3.2-7.0.1.1_3.9__g8175d3d.ari/lib64:/apps/daint/UES/jenkins/7.0.UP01/gpu/easybuild/software/zlib/1.2.11/lib:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/bzip2/1.0.6-CrayGNU-19.08/lib:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/Serialbox/2.4.1-CrayGNU-19.08/lib:/opt/gcc/8.3.0/snos/lib64:/opt/cray/pe/papi/5.7.0.1/lib64:/opt/cray/job/2.2.4-7.0.1.1_3.8__g36b56f4.ari/lib64:/users/omlins/.mujoco/mujoco200/bin (previously undefined)
== 2020-06-03 17:27:54,631 filetools.py:1495 INFO Creating directory /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/Dycore/551f6b4/CrayGNU-19.08-cuda-10.1-crclim-double/easybuild_obj (parents: True, set_gid: False, sticky: False)
== 2020-06-03 17:27:54,632 run.py:222 INFO running cmd: cmake -DCMAKE_INSTALL_PREFIX=/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/Dycore/551f6b4-CrayGNU-19.08-cuda-10.1-crclim-double -DCMAKE_C_COMPILER='cc' -DCMAKE_Fortran_FLAGS='-O2 -fno-math-errno' -DCMAKE_CXX_FLAGS='-O2 -fno-math-errno' -DCMAKE_CXX_COMPILER='CC' -DCMAKE_Fortran_COMPILER='ftn' -DCMAKE_C_FLAGS='-O2 -fno-math-errno' -DCMAKE_VERBOSE_MAKEFILE=ON -DBOOST_ROOT=/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/Boost/1.67.0-CrayGNU-19.08 -DBoost_NO_SYSTEM_PATHS=ON -DBoost_NO_BOOST_CMAKE=ON -DCMAKE_BUILD_TYPE=Release -DSINGLEPRECISION=OFF -DCUDA_BACKEND=ON -DSTELLA_DIR=${EBROOTSTELLA} -DBITREPRO=OFF /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/Dycore/551f6b4/CrayGNU-19.08-cuda-10.1-crclim-double/../dycore
== 2020-06-03 17:27:55,450 build_log.py:169 ERROR EasyBuild crashed with an error (at easybuild/software/EasyBuild/4.2.1/lib/python2.7/site-packages/easybuild/base/exceptions.py:124 in __init__): cmd " cmake -DCMAKE_INSTALL_PREFIX=/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/Dycore/551f6b4-CrayGNU-19.08-cuda-10.1-crclim-double -DCMAKE_C_COMPILER='cc' -DCMAKE_Fortran_FLAGS='-O2 -fno-math-errno' -DCMAKE_CXX_FLAGS='-O2 -fno-math-errno' -DCMAKE_CXX_COMPILER='CC' -DCMAKE_Fortran_COMPILER='ftn' -DCMAKE_C_FLAGS='-O2 -fno-math-errno' -DCMAKE_VERBOSE_MAKEFILE=ON -DBOOST_ROOT=/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/Boost/1.67.0-CrayGNU-19.08 -DBoost_NO_SYSTEM_PATHS=ON -DBoost_NO_BOOST_CMAKE=ON -DCMAKE_BUILD_TYPE=Release -DSINGLEPRECISION=OFF -DCUDA_BACKEND=ON -DSTELLA_DIR=${EBROOTSTELLA} -DBITREPRO=OFF /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/Dycore/551f6b4/CrayGNU-19.08-cuda-10.1-crclim-double/../dycore" exited with exit code 1 and output:
CMake Error: The source directory "/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/Dycore/551f6b4/dycore" does not exist.
Specify --help for usage, or press the help button on the CMake GUI.
(at easybuild/software/EasyBuild/4.2.1/lib/python2.7/site-packages/easybuild/tools/run.py:533 in parse_cmd_output)
== 2020-06-03 17:27:55,450 filetools.py:1605 INFO Removing lock /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/.locks/_apps_daint_UES_omlins_cosmo_pe1908_keepsrc_eb4.2.1_software_Dycore_551f6b4-CrayGNU-19.08-cuda-10.1-crclim-double.lock...
== 2020-06-03 17:27:55,451 filetools.py:330 INFO Path /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/.locks/_apps_daint_UES_omlins_cosmo_pe1908_keepsrc_eb4.2.1_software_Dycore_551f6b4-CrayGNU-19.08-cuda-10.1-crclim-double.lock successfully removed.
== 2020-06-03 17:27:55,451 filetools.py:1609 INFO Lock removed: /apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/.locks/_apps_daint_UES_omlins_cosmo_pe1908_keepsrc_eb4.2.1_software_Dycore_551f6b4-CrayGNU-19.08-cuda-10.1-crclim-double.lock
== 2020-06-03 17:27:55,451 easyblock.py:3238 WARNING build failed (first 300 chars): cmd " cmake -DCMAKE_INSTALL_PREFIX=/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/software/Dycore/551f6b4-CrayGNU-19.08-cuda-10.1-crclim-double -DCMAKE_C_COMPILER='cc' -DCMAKE_Fortran_FLAGS='-O2 -fno-math-errno' -DCMAKE_CXX_FLAGS='-O2 -fno-math-errno' -DCMAKE_CXX_COMPILER='CC' -DCMAKE_Fortran_C
== 2020-06-03 17:27:55,451 easyblock.py:295 INFO Closing log for application name Dycore version 551f6b4
omlins@daint103:/apps/daint/UES/omlins/cosmo_pe1908_keepsrc_eb4.2.1/production>