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No mesh could be created. Wrong DICOM or wrong iso value #53

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Lod3 opened this issue Sep 13, 2024 · 2 comments
Open

No mesh could be created. Wrong DICOM or wrong iso value #53

Lod3 opened this issue Sep 13, 2024 · 2 comments

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@Lod3
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Lod3 commented Sep 13, 2024

Hi, thank you for creating this project.

Dicom2Mesh Settings
-------------------
Input directory: /data
Output file path: ..\Downloads\Temp\rock_bitescan_lower_jaw_scan.stl
Surface segmentation: 557
Mesh reduction: disabled
Mesh polygon limitation: disabled
Mesh smoothing: disabled
Mesh centering: disabled
Mesh filtering: disabled
Volume cropping: disabled

Using standard DICOM loader
Read DICOM images located under /data
ERROR: In /build/vtk6-VHOYAG/vtk6-6.3.0+dfsg1/IO/Image/vtkDICOMImageReader.cxx, line 143
vtkDICOMImageReader (0x55a6e7fbb000): Couldn't open /data

Progress: 0.0%ERROR: In /build/vtk6-VHOYAG/vtk6-6.3.0+dfsg1/IO/Image/vtkDICOMImageReader.cxx, line 243
vtkDICOMImageReader (0x55a6e7fbb000): Either a filename was not specified or the specified directory does not contain any DICOM images.

Progress: doneERROR: In /build/vtk6-VHOYAG/vtk6-6.3.0+dfsg1/Common/ExecutionModel/vtkExecutive.cxx, line 784
vtkCompositeDataPipeline (0x55a6e7fbc740): Algorithm vtkDICOMImageReader(0x55a6e7fbb000) returned failure for request: vtkInformation (0x55a6e7fc19f0)
  Debug: Off
  Modified Time: 149
  Reference Count: 1
  Registered Events: (none)
  Request: REQUEST_DATA
  FROM_OUTPUT_PORT: 0
  ALGORITHM_AFTER_FORWARD: 1
  FORWARD_DIRECTION: 0





Create surface mesh with iso value = 557
Progress: doneERROR: In /build/vtk6-VHOYAG/vtk6-6.3.0+dfsg1/Filters/Core/vtkMarchingCubes.cxx, line 417
vtkMarchingCubes (0x55a6e7fba5e0): Cannot contour data of dimension != 3

No mesh could be created. Wrong DICOM or wrong iso value

I am using windows

This is the DCM file I am trying to convert to STL

Scans_rock_LowerJawScan.zip
The file is what I received from a colleague to test if we could convert into a more conventional 3D file format like STL, X3D or OBJ
I tried this project for STL. Any help is welcome for X3D or OBJ.
Thank you

@eidelen
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eidelen commented Sep 13, 2024

Hi,
I couldn't open your file neither. Even by using VTK9 with the extended Dicom Reader library. It says it is empty. I also tried it with the application ITK-Snap (btw - great tool with an UI and advanced segmentation features)... I cannot even read it with that. As it is only 9MB, could it be possibly empty? Do you have some more information?
Thank you,
Adrian

@eidelen
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eidelen commented Oct 10, 2024

Hi, could you solve this problem or do you have additional information? Otherwise, please close the issue. Thank you, Adrian

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