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README.md

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EzAAI is a suite of workflows for improved AAI calculation performance along with the novel module that provides hierarchical clustering analysis and dendrogram representation.
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* [Homepage](http://leb.snu.ac.kr/ezaai)
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* [Homepage](http://endixk.github.io/ezaai)
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* [Publication](https://doi.org/10.1007/s12275-021-1154-0)
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## Quick start with conda
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~~~bash
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conda install -c bioconda -y ezaai
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conda install -c bioconda ezaai
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ezaai -h
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~~~
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## Available modules
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### `extract`
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* Extract protein database from genome using Prodigal
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* Extract protein database(s) from genome using Prodigal
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~~~bash
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ezaai extract -i <IN_SEQ> -o <OUT_DB>
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~~~
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|Argument|Description|
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|:-:|-----------------|
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|`-i`|Input prokaryotic genome sequence|
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|`-o`|Output database|
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|`-i`|Input file or directory with prokaryotic genome sequence(s)|
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|`-o`|Output file or directory|
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