Updated README

Author: fredericlemoine

README.md

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 # Bayesian Bootstrap Analyses
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+This repository contains the code of the "Bayesian bootstrap" analyses.
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+It is organized in 6 subdirectories corresponding to the 6 use-cases:
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+- 01_simple_example: simple example of high supports of null branches and low support of short branches.
+- 02_covid: Analysis of SARS-CoV-2 dataset.
+- 03_ebola: Analysis of the EBOV dataset.
+- 04_RVFV: Analysis of the Rift Valley Fever Virus dataset.
+- 05_real_datasets: Analysis of 300+100 datasets from https://cme.h-its.org/exelixis/material/raxml_adaptive_data.tar.gz .
+- 06_simulations: Aalysis of simulated datasets with different levels of homoplasy.
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+To run the different analyses, a run.sh script is present in each folder, describing the steps. It generally involves running a nextflow workflow.
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+The required software are: Java and Apptainer/Singularity.
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+The results are given in the release of this repository.