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index.html
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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<meta name="description" content="Fiji: A batteries-included distribution of ImageJ.">
<meta name="author" content="The Fiji Team">
<link rel="shortcut icon" href="site/ico/favicon.ico">
<title>Fiji: ImageJ, with "Batteries Included"</title>
<!-- Bootstrap core CSS -->
<link href="https://cdn.jsdelivr.net/npm/[email protected]/dist/css/bootstrap.min.css" rel="stylesheet" integrity="sha384-wEmeIV1mKuiNpC+IOBjI7aAzPcEZeedi5yW5f2yOq55WWLwNGmvvx4Um1vskeMj0" crossorigin="anonymous">
<!-- Custom site styling -->
<link href="site/css/style.css?v1.0.0" rel="stylesheet">
<!-- UAParser.js - https://docs.uaparser.dev/ -->
<script src="site/js/ua-parser.min.js"></script>
<!-- Font Awesome -->
<script defer src="https://use.fontawesome.com/releases/v5.8.1/js/solid.js"
integrity="sha384-IA6YnujJIO+z1m4NKyAGvZ9Wmxrd4Px8WFqhFcgRmwLaJaiwijYgApVpo1MV8p77" crossorigin="anonymous">
</script>
<script defer src="https://use.fontawesome.com/releases/v5.8.1/js/brands.js"
integrity="sha384-rUOIFHM3HXni/WG5pzDhA1e2Js5nn4bWudTYujHbbI9ztBIxK54CL4ZNZWwcBQeD" crossorigin="anonymous">
</script>
<script defer src="https://use.fontawesome.com/releases/v5.8.1/js/fontawesome.js"
integrity="sha384-EMmnH+Njn8umuoSMZ3Ae3bC9hDknHKOWL2e9WJD/cN6XLeAN7tr5ZQ0Hx5HDHtkS" crossorigin="anonymous">
</script>
<!-- HTML5 shim and Respond.js IE8 support of HTML5 elements and media queries -->
<!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/libs/html5shiv/3.7.0/html5shiv.js"></script>
<script src="https://oss.maxcdn.com/libs/respond.js/1.4.2/respond.min.js"></script>
<![endif]-->
</head>
<body role="document">
<!-- Fixed navbar -->
<nav class="navbar navbar-expand-lg navbar-dark bg-dark fixed-top" role="navigation">
<div class="container">
<a class="navbar-brand" href="/">
<img width="30" height="30" class="d-inline-block align-top" src="site/logo.png" alt="Fiji logo" /> Fiji</a>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarSupportedContent" aria-controls="navbarSupportedContent" aria-expanded="false" aria-label="Toggle navigation">
<span class="navbar-toggler-icon"></span>
</button>
<div class="collapse navbar-collapse" id="navbarSupportedContent">
<ul class="navbar-nav me-auto mb-2 mb-lg-0">
<li class="nav-item active">
<a class="nav-link" href="#">Home <span class="visually-hidden">(current)</span></a>
</li>
<li class="nav-item">
<a class="nav-link" href="https://imagej.net/software/fiji">Wiki</a>
</li>
<li class="nav-item">
<a class="nav-link" href="https://github.com/fiji">Source</a>
</li>
<li class="nav-item">
<a class="nav-link" href="https://forum.image.sc/tag/fiji">Forum</a>
</li>
</ul>
</div>
</div>
</nav>
<div class="container" role="main">
<!-- Main jumbotron for a primary marketing message or call to action -->
<!-- See: https://getbootstrap.com/docs/5.0/examples/jumbotron/ -->
<div class="p-5 mb-4 bg-light rounded-3">
<div class="row">
<div class="col-12 col-md-4 col-lg-3">
<img class="img-fluid img-logo" src="site/logo.png" alt="Fiji logo" />
</div>
<div class="col-12 col-md-8 col-lg-9">
<h1 class="display-3">Fiji</h1>
<p>
Fiji is an image processing package — a "batteries-included" distribution of <a
href="https://imagej.net/">ImageJ</a>, bundling many plugins which facilitate scientific image analysis.
</p>
<div class="btn-group">
<a href="#" class="btn btn-lg btn-success" id="auto-download">
Choose a download →
</a>
<button type="button" class="btn btn-lg btn-success dropdown-toggle dropdown-toggle-split" data-bs-toggle="dropdown" aria-expanded="false">
<span class="visually-hidden">Toggle Dropdown</span>
</button>
<ul class="dropdown-menu dropdown-menu-end">
<li>
<a class="dropdown-item" href="https://downloads.imagej.net/fiji/latest/fiji-linux64.zip">
<span class="fab fa-fw fa-linux"></span> Download for Linux (64-bit)
</a>
</li>
<li>
<div class="dropdown-divider"></div>
</li>
<li>
<a class="dropdown-item" href="https://downloads.imagej.net/fiji/future/fiji-future-macos-arm64.zip">
<span class="fab fa-fw fa-apple"></span> Download for macOS (Apple silicon)
</a>
</li>
<li>
<a class="dropdown-item" href="https://downloads.imagej.net/fiji/latest/fiji-macosx.zip">
<span class="fab fa-fw fa-apple"></span> Download for macOS (Intel)
</a>
</li>
<li>
<div class="dropdown-divider"></div>
</li>
<li>
<a class="dropdown-item" href="https://downloads.imagej.net/fiji/latest/fiji-win64.zip">
<span class="fab fa-fw fa-windows"></span> Download for Windows (64-bit)
</a>
</li>
<li>
<a class="dropdown-item" href="https://downloads.imagej.net/fiji/latest/fiji-win32.zip">
<span class="fab fa-fw fa-windows"></span> Download for Windows (32-bit)
</a>
</li>
<li>
<div class="dropdown-divider"></div>
</li>
<li>
<a class="dropdown-item" href="https://downloads.imagej.net/fiji/latest/fiji-nojre.zip">
<span class="fa-layers">
<span class="fab fa-java"></span>
<span class="fas fa-times" data-fa-transform="shrink-7 up-4.2 right-5"></span>
</span> Download the no-JRE Version
</a>
</li>
</ul>
</div>
<hr />
<p>
<a href="https://imagej.net/software/fiji/downloads" class="btn btn-success"><span class="fas fa-download"></span> More Downloads</a>
<a class="btn btn-primary" href="#cite"><span class="fas fa-quote-left"></span> Cite</a>
<a class="btn btn-dark" href="https://github.com/fiji"><span class="fab fa-github"></span> Contribute</a>
</p>
</div>
</div>
</div>
<h1 class="text-center">Why Fiji?</h1>
<div class="row text-center">
<div class="col-12 col-md-4">
<div class=" fa-5x text-success"><span class="fas fa-check-circle"></span></div>
<h2>Easy to Use</h2>
<p>
Fiji is easy to use and install - in one-click, Fiji installs all of its plugins, features an automatic updater, and offers comprehensive documentation.
</p>
</div>
<div class="col-12 col-md-4">
<div class=" fa-5x text-primary"><span class="fas fa-cogs"></span></div>
<h2>Powerful</h2>
<p>
Fiji bundles together many popular and useful ImageJ plugins for image analysis into one installation, and automatically manages their dependencies and updating.
</p>
</div>
<div class="col-12 col-md-4">
<div class=" fa-5x text-danger"><span class="fas fa-heart"></span></div>
<h2>Free & Open Source</h2>
<p>
Like ImageJ itself, Fiji is an <a href="https://imagej.net/licensing/open-source">open source</a> project hosted on <a href="https://github.com/fiji">GitHub</a>, developed and written by the community.
</p>
</div>
</div>
<hr />
<div class="row">
<div class="col-md-4">
<h2>Plugins</h2>
<p>
Fiji features thousands of plugins that aid in scientific image processing and analysis. Here are a few featured plugins hand-picked by the Fiji community - refresh the page to see different plugins!
</p>
<p>
<a class="btn btn-outline-primary" href="https://imagej.net/list-of-extensions">List of All Plugins</a>
</p>
</div>
<div class="col-md-8">
<div class="card text-center">
<div class="card-header">
<ul class="nav nav-tabs card-header-tabs" id="plugin-tabs" role="tablist">
<!-- dynamically generated from plugins.json -->
</ul>
</div>
<div class="card-body">
<div class="tab-content" id="plugin-tab-content">
<!-- dynamically generated from plugins.json -->
</div>
</div>
</div>
</div>
</div>
<hr />
<div class="row">
<div class="col-md-6">
<h2>Contributors</h2>
<p>
Fiji is developed by <a href="https://imagej.net/people">contributors around the world</a>, and <a href="https://imagej.net/contribute/funding">funded from various sources</a>. It is maintained by the <a href="https://imagej.net/orgs/loci">Eliceiri/LOCI group</a> at the University of Wisconsin-Madison, the <a href="https://imagej.net/people/fjug">Jug</a> group at <a href="https://imagej.net/orgs/human-technopole">Human Technopole</a> in Milan, and <a href="https://imagej.net/people/tomancak">Tomancak</a> lab at the <a href="https://imagej.net/orgs/mpi-cbg">MPI-CBG</a> in Dresden.
</p>
<p class="card-text">
Fiji is an <a href="https://imagej.net/licensing/open-source">open source</a> project, so everybody is welcome to <a href="https://imagej.net/software/fiji/#contributing">contribute</a> with plugins, patches, bug reports, tutorials, documentation, and artwork.
</p>
<p>
<a class="btn btn-outline-primary" href="https://imagej.net/software/fiji/#contributing">Read more</a>
</p>
<hr />
<h2>Licensing</h2>
<p>
Fiji is licensed under the <a href="https://imagej.net/licensing/gpl">GNU General Public License</a>. It builds on top of the <a href="https://imagej.net/software/imagej2">ImageJ2</a> core, which is licensed under the permissive <a href="https://imagej.net/licensing/bsd#simplified-bsd-license">BSD 2-clause license</a>. Plugins and other components have <a href="https://github.com/fiji/fiji/blob/master/LICENSES">their own licenses</a>.
</p>
<p>
<a class="btn btn-outline-primary btn-lg" href="https://imagej.net/licensing">Read more</a>
</p>
<hr />
<h2 id="cite">Citing Fiji</h2>
<p>
Like most scientific software, funding for the Fiji project is driven by <a href="https://scholar.google.com/scholar?as_sdt=0,5&hl=en&scisbd=1&sciodt=0,5&cites=17249863664147333646&scipsc=">citations</a>. If you use Fiji, please <a href="https://imagej.net/contribute/citing">cite it</a> in your publications!
</p>
<p>
<a class="btn btn-outline-primary btn-lg" href="https://imagej.net/contribute/citing">Read more</a>
</p>
<hr class="d-md-none" />
</div>
<div class="col-md-6">
<h2>Partnered Projects</h2>
<p>
The Fiji project is driven by a strong desire to improve the tools available for life sciences to process and analyze data. To this end, Fiji collaborates closely with the following projects:
</p>
<style>.partner-icon { max-width: 128px; }</style>
<div class="row text-center d-flex align-items-end">
<div class="col-4">
<a href="https://imagej.net/software/imagej">
<img class="img-fluid partner-icon" src="site/img/imagej.png" alt="ImageJ logo" />
</a>
<p>
<a href="https://imagej.net/software/imagej">ImageJ</a>
</p>
</div>
<div class="col-4">
<a href="https://imagej.net/software/imagej2">
<img class="img-fluid partner-icon" src="site/img/imagej2.png" alt="ImageJ2 logo" />
</a>
<p>
<a href="https://imagej.net/software/imagej2">ImageJ2</a>
</p>
</div>
<div class="col-4">
<a href="https://imagej.net/software/micro-manager">
<img class="img-fluid partner-icon" src="site/img/micromanager.jpg" alt="Micro-Manager logo" />
</a>
<p>
<a href="https://imagej.net/software/micro-manager">µManager</a>
</p>
</div>
<div class="col-4">
<a href="https://imagej.net/software/knime">
<img class="img-fluid partner-icon" src="site/img/knime.svg" alt="KNIME logo" />
</a>
<p>
<a href="https://imagej.net/software/knime">KNIME</a>
</p>
</div>
<div class="col-4">
<a href="https://imagej.net/formats/bio-formats">
<img class="img-fluid partner-icon" src="site/img/bio-formats.png" alt="Bio-Formats logo" />
</a>
<p>
<a href="https://imagej.net/formats/bio-formats">Bio-Formats</a>
</p>
</div>
<div class="col-4">
<a href="https://imagej.net/software/omero">
<img class="img-fluid partner-icon" src="site/img/ome.png" alt="OME logo" />
</a>
<p>
<a href="https://imagej.net/software/omero">OME</a>
</p>
</div>
</div>
</div>
</div>
<hr />
<footer class="text-center">
<p>
Made with <span class="fas fa-heart" style="color:red"></span> by the <a href="https://imagej.net/people/#fiji">Fiji team</a>
</p>
<p>
<a href="https://github.com/fiji"><span class="fab fa-lg fa-github" style="color:black"></span></a>
<a href="https://twitter.com/FijiSc"><span class="fab fa-lg fa-twitter" style="color:#48A1EB"></span></a>
</p>
</footer>
</div>
<!-- Bootstrap core JavaScript
================================================== -->
<!-- Placed at the end of the document so the pages load faster -->
<script src="https://cdn.jsdelivr.net/npm/[email protected]/dist/js/bootstrap.bundle.min.js" integrity="sha384-p34f1UUtsS3wqzfto5wAAmdvj+osOnFyQFpp4Ua3gs/ZVWx6oOypYoCJhGGScy+8" crossorigin="anonymous"></script>
<script>
const osLinks = {
linux_x64: {
link: "https://downloads.imagej.net/fiji/latest/fiji-linux64.zip",
icon: "linux",
text: "Download for Linux (64-bit)"
},
macos_arm64: {
link: "https://downloads.imagej.net/fiji/future/fiji-future-macos-arm64.zip",
icon: "apple",
text: "Download for macOS (Apple silicon)"
},
macos_x64: {
link: "https://downloads.imagej.net/fiji/latest/fiji-macosx.zip",
icon: "apple",
text: "Download for macOS (Intel)"
},
windows_x64: {
link: "https://downloads.imagej.net/fiji/latest/fiji-win64.zip",
icon: "windows",
text: "Download for Windows (64-bit)"
}
}
function setDownload(currentOS){
const autoDownload = document.getElementById("auto-download");
autoDownload.classList.remove('btn-danger');
autoDownload.classList.add('btn-success');
autoDownload.href = osLinks[currentOS]["link"];
autoDownload.innerHTML =
`<span class="fab fa-${osLinks[currentOS]["icon"]}"></span>
${osLinks[currentOS]["text"]}`
}
if (navigator.platform.indexOf("Linux")!=-1){
setDownload("linux_x64");
}
else if (navigator.platform.indexOf("Win")!=-1){
setDownload("windows_x64");
}
else if (navigator.platform.indexOf("Mac")!=-1){
const uap = new UAParser();
const cpu = uap.getCPU();
const arch = cpu['architecture'];
setDownload(arch == 'arm64' ? "macos_arm64" : "macos_x64");
}
function slugify(text){
return text.toString().toLowerCase()
.replace(/\s+/g, '-') // Replace spaces with -
.replace(/[^\w\-]+/g, '') // Remove all non-word chars
.replace(/\-\-+/g, '-') // Replace multiple - with single -
.replace(/^-+/, '') // Trim - from start of text
.replace(/-+$/, ''); // Trim - from end of text
}
let first = true;
const MAX_PLUGIN_COUNT = 6; // controls max number of tabs shown
fetch('site/plugins.json')
.then(response => response.json())
.then((json) => {
let plugins = json.plugins;
// Fisher-Yates shuffle; see: https://javascript.info/task/shuffle
for (let i = plugins.length - 1; i > 0; i--) {
let j = Math.floor(Math.random() * (i + 1)); // random index from 0 to i
[plugins[i], plugins[j]] = [plugins[j], plugins[i]]; // swap elements
}
if (plugins.length > MAX_PLUGIN_COUNT){
plugins = plugins.slice(0,MAX_PLUGIN_COUNT);
}
// TODO(mattxwang): we should probably properly sanitize inputs before injecting them
plugins.map((val) => {
// generating the tab header
let nameSlug = 'plugin-' + slugify(val.name);
let tabString = `
<li class="nav-item" role="presentation">
<button class="nav-link ${first ? 'active' : ''}" id="${nameSlug}-tab-header" data-bs-toggle="tab" data-bs-target="#${nameSlug}-tab" role="tab" aria-controls="${nameSlug}" aria-selected="true">${val.name}</button>
</li>
`
// generating the tab panel
let paneString = `
<div class="tab-pane fade ${first ? 'show active' : ''}" id="${nameSlug}-tab" role="tabpanel" aria-labelledby="${nameSlug}-tab-header">
${val.imgUrl ?
'<img class="img-fluid img-plugin" alt="image showing ' + val.name + ' in action" src = "' + val.imgUrl + '" /> <hr />'
: ''
}
<h5 class="card-title">${val.name}</h5>
<p class="card-text">${val.description}</p>
<a href="${val.link}" class="btn btn-primary">More information</a>
</div>
`
document.getElementById("plugin-tabs").innerHTML += tabString;
document.getElementById("plugin-tab-content").innerHTML += paneString;
if (first){
first = false;
}
})
});
</script>
</body>
</html>