On 2018-11-20 the following genomes were available:
| Genome | dicots_03 | dicots_04 | monocots_03 | monocots_04 |
|---|---|---|---|---|
| Actinidia chinensis FEI Lab v1.0 | x | |||
| Amborella trichopoda Amborella V1.0 | x | |||
| Amborella trichopoda JGI v1.0 | x | |||
| Ananas comosus JGI v3.0 | x | |||
| Arabidopsis lyrata JGI v1.0 | x | |||
| Arabidopsis lyrata JGI v2.1 | x | |||
| Arabidopsis thaliana COL-0 TAIR10 | x | |||
| Arabidopsis thaliana COL0 Araport11 | x | |||
| Arachis ipaensis Peanut Base v1.0 | x | |||
| Beta vulgaris RefBeet 1.1 | x | |||
| Beta vulgaris RefBeet v1.2 | x | |||
| Brachypodium distachyon JGI v3.1 | x | |||
| Brachypodium distachyon MIPS 1.2 | x | |||
| Brassica oleracea Ensembl Genomes v2.1 | x | |||
| Brassica rapa Annotation v1.2 on assembly v1.1 (Phytozome 9.1) | x | |||
| Brassica rapa JGI FPsc1.3 | x | |||
| Cajanus cajan Penguin Genomics v5.0 | x | |||
| Capsella rubella JGI annotation v1.0 on assembly v1 | x | |||
| Capsella rubella JGI v1.0 | x | |||
| Capsicum annuum Pepper Genome v2.0 | x | |||
| Carica papaya Hawaii Agriculture Research Center | x | |||
| Carica papaya JGI ASGPB0.4 | x | |||
| Chenopodium quinoa JGI v1.0 | x | |||
| Chlamydomonas reinhardtii JGI v5.0 assembly, annot v5.3.1 based on Augustus u11.6 | x | |||
| Chlamydomonas reinhardtii JGI v5.5 | x | |||
| Cicer arietinum LIS v1.0 | x | |||
| Citrullus lanatus Cucurbit Genomics Database | x | |||
| Citrullus lanatus Cucurbit Genomics Database v1.0 | x | |||
| Citrus clementina JGI v1.0 | x | |||
| Citrus sinensis JGI v1 assembly and v1.0 annotation | x | |||
| Coffea canephora Coffee Genome Hub v1 | x | |||
| Corchorus olitorius GenBank v1.0 | x | |||
| Cucumis melo Melonomics v3.5 | x | |||
| Cucumis sativus L. JGI v1.0 | x | |||
| Daucus carota JGI v2.0 | x | |||
| Elaeis guineensis NCBI Genome v1.0 | x | |||
| Erythranthe guttata JGI v2.0 | x | |||
| Eucalyptus grandis JGI assembly v1.0, annotation v1.1 | x | |||
| Eucalyptus grandis JGI v2.0 | x | |||
| Fragaria vesca JGI v1.1 | x | |||
| Fragaria vesca Strawberry Genome 1.0 | x | |||
| Glycine max JGI Glyma1.1 annotation of the chromosome-based Glyma1 assembly | x | |||
| Glycine max JGI Wm82.a2.v1 | x | |||
| Gossypium raimondii JGI annotation v2.1 on assembly v2.0 | x | |||
| Gossypium raimondii JGI v2.1 | x | |||
| Hevea brasiliensis NCBI Genomes v1 | x | |||
| Hordeum vulgare Ensembl Genomes ASM32608v1 | x | |||
| Hordeum vulgare MIPS | x | |||
| Lotus japonicus Kazusa 2.5 | x | |||
| Malus domestica IASMA | x | |||
| Malus domestica Penguin Genomics v2 | x | |||
| Manihot esculenta Cassava4 | x | |||
| Manihot esculenta JGI v6.1 | x | |||
| Marchantia polymorpha JGI v3.1 | x | |||
| Medicago truncatula JCVI 4.0 | x | |||
| Medicago truncatula JGI Mt4.0v1 | x | |||
| Micromonas commoda JGI v3.0 | x | |||
| Musa acuminata Banana Genome v1.0 | x | |||
| Musa acuminata Genescope-Cirad | x | |||
| Nelumbo nucifera LOTUS-DB v1.1 | x | |||
| Oropetium thomaeum JGI v1.0 | x | |||
| Oryza brachyantha Ensembl Plants v1.4b | x | |||
| Oryza sativa ssp. indica 9311_BGF_2005 | x | |||
| Oryza sativa ssp. indica MBKBASE v1.0 | x | |||
| Oryza sativa ssp. japonica JGI v7.0 | x | |||
| Oryza sativa ssp. japonica MSU RGAP 7 | x | |||
| Ostreococcus lucimarinus JGI 2.0 | x | |||
| Ostreococcus lucimarinus JGI v2.0 assembly and annotation | x | |||
| Petunia axillaris Sol Genomics v1.6.2 | x | |||
| Phalaenopsis equestris Genomics v1.0 | x | |||
| Phyllostachys edulis NCGR v1.0 | x | |||
| Physcomitrella patens JGI assembly release v1.1 and COSMOSS annotation v1.6 | x | |||
| Physcomitrella patens JGI v3.3 | x | |||
| Picea abies ConGenIE v1.0 | x | |||
| Populus trichocarpa JGI assembly release v3.0, annotation v3.0 | x | |||
| Populus trichocarpa JGI v3.1 | x | |||
| Prunus persica JGI release v1.0 | x | |||
| Prunus persica JGI v2.1 | x | |||
| Pyrus bretschneideri Pear Genome Project v1.0 | x | |||
| Ricinus communis JCVI 1.0 | x | |||
| Ricinus communis JGI v0.1 | x | |||
| Schrenkiella parvula Thellungiella v2.0 (TpV84) | x | |||
| Selaginella moellendorffii JGI v1.0 | x | |||
| Setaria italica JGI 8.3X chromosome-scale assembly release 2.0, annotation version 2.1 | x | |||
| Setaria italica JGI v2.2 | x | |||
| Solanum lycopersicum ITAG 2.3 | x | |||
| Solanum lycopersicum Sol Genomics itag2.4 | x | |||
| Solanum tuberosum ITAG 001 | x | |||
| Solanum tuberosum JGI v4.03 | x | |||
| Sorghum bicolor JGI 1.4 | x | |||
| Sorghum bicolor JGI v3.1 | x | |||
| Spirodela polyrhiza JGI v2.0 | x | |||
| Tarenaya hassleriana RefSeq v1 | x | |||
| Thellungiella parvula TpV84 | x | |||
| Theobroma cacao D. Gilbert public gene set 8 Mar 2012 on assembly v1.1 | x | |||
| Theobroma cacao RefSeq v1.1 | x | |||
| Trifolium pratense JGI v2 | x | |||
| Triticum aestivum Ensembl Plants TGACv1 | x | |||
| Utricularia gibba CoGe v4 | x | |||
| Vigna radiata var. radiata LIS v6 | x | |||
| Vitis vinifera JGI 12xMarch2010 | x | |||
| Vitis vinifera genescope v1 | x | |||
| Zea mays B73 5b.60 | x | |||
| Zea mays B73 AGP v4.0 | x | |||
| Ziziphus jujuba RefSeq v1.1 | x | |||
| Zostera marina JGI v2.2 | x | |||
| Zoysia japonica ssp. nagirizaki Zoysia Genome Database v1.1 | x |