test/DESCRIPTION at main · fspecque/test · GitHub

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Package: SeuratIntegrate
Type: Package
Title: Expands the set of integration methods available to Seurat
Version: 0.4.1
Authors@R: c(
  person("Florian", "Specque", , "florian.specque@u-bordeaux.fr",
         role = c("aut", "cre"), comment = c(ORCID = "0000-0002-4449-6381")),
  person("Domitille", "Chalopin", , "domitille.chalopin-fillot@u-bordeaux.fr",
         role = c("aut"), comment = c(ORCID = "0000-0003-0588-9630")),
  person("Macha", "Nikolski", , "macha.nikolski@u-bordeaux.fr",
         role = c("rev"), comment = c(ORCID = "0000-0001-6059-577X")),
  person("Aurélien", "Barré", , "aurelien.barre@u-bordeaux.fr",
         role = c("ctb"), comment = c(ORCID = "0009-0006-4773-3369")),
  person("Centre de Bioinformatique de Bordeaux (CBiB)",
         role = c("cph")))
Description: R package gathering a set of wrappers to apply various integration
    methods to Seurat objects (and rate such methods). Intended to apply to
    Seurat V5 objects bearing multiple layers.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2
Depends:
    R (>= 3.5.0),
    Seurat (>= 5.0.0)
Imports:
    rlang (>= 1.1.0),
    SeuratObject,
    sva,
    batchelor,
    dplyr,
    harmony,
    Matrix,
    reticulate,
    RhpcBLASctl,
    stats,
    SummarizedExperiment,
    tools,
    cluster,
    broom,
    ggplot2,
    cowplot,
    forcats,
    purrr,
    tibble,
    tidyr,
    vctrs,
    future,
    igraph,
    parallelly,
    methods,
    scales,
    cli,
    pbapply,
    matrixStats,
    Rcpp
Suggests:
    SeuratData,
    lisi,
    knitr,
    rmarkdown,
    distances,
    Rfast,
    parallelDist,
    kBET,
    ggforce
Collate:
    'Combat.R'
    'Harmony.R'
    'MNN.R'
    'RcppExports.R'
    'Scanorama.R'
    'SeuratIntegrate-package.R'
    'bbknn.R'
    'clustering.R'
    'conda_S4_definitions.R'
    'conda_S4_methods.R'
    'conda_S4_helpers.R'
    'utils.R'
    'convert_distances.R'
    'do_integrate.R'
    'expand_knn_graph.R'
    'globals.R'
    'import-standalone-obj-type.R'
    'import-standalone-types-check.R'
    'internals.R'
    'kwargs.R'
    'metrics_ari.R'
    'metrics_connectivity.R'
    'numeric_lisi_class.R'
    'scores.R'
    'metrics_pca.R'
    'metrics_kbet.R'
    'metrics_lisi.R'
    'metrics_nmi.R'
    'metrics_scGraph.R'
    'metrics_silhouette.R'
    'scANVI.R'
    'scVI.R'
    'trVAE.R'
    'zzz.R'
VignetteBuilder: knitr
Config/Needs/website: rmarkdown
URL: https://github.com/cbib/Seurat-Integrate, https://cbib.github.io/Seurat-Integrate/
BugReports: https://github.com/cbib/Seurat-Integrate/issues
Remotes: SeuratData=github::satijalab/seurat-data,
  github::theislab/kBET,
  lisi=github::immunogenomics/LISI
LinkingTo:
    Rcpp,
    RcppArmadillo