first commit

Author: sig-zhengf

.gitignore

@@ -0,0 +1,28 @@
+# General
+.DS_Store
+.AppleDouble
+.LSOverride
+
+# Icon must end with two \r
+Icon
+
+# Thumbnails
+._*
+
+# Files that might appear in the root of a volume
+.DocumentRevisions-V100
+.fseventsd
+.Spotlight-V100
+.TemporaryItems
+.Trashes
+.VolumeIcon.icns
+.com.apple.timemachine.donotpresent
+
+# Directories potentially created on remote AFP share
+.AppleDB
+.AppleDesktop
+Network Trash Folder
+Temporary Items
+.apdisk
+
+.idea

Dockerfile

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+FROM alpine:latest
+MAINTAINER Feng Zheng
+
+# installs Python 3 and pip
+RUN apk add --no-cache python3 && \
+    if [ ! -e /usr/bin/python ]; then ln -sf python3 /usr/bin/python ; fi && \
+    \
+    python3 -m ensurepip && \
+    rm -r /usr/lib/python*/ensurepip && \
+    pip3 install --no-cache --upgrade pip setuptools wheel && \
+    if [ ! -e /usr/bin/pip ]; then ln -s pip3 /usr/bin/pip ; fi
+
+# installs data science packages
+RUN apk add --no-cache \
+        --virtual=.build-dependencies \
+        g++ gcc gfortran file binutils \
+        musl-dev python3-dev cython \
+        openblas-dev postgresql-dev && \
+    apk add libstdc++ openblas openssh-client openssl postgresql-libs && \
+    \
+    ln -s locale.h /usr/include/xlocale.h && \
+    \
+    pip install --upgrade cython && \
+    pip install psycopg2 && \
+    pip install numpy && \
+    pip install pandas && \
+    pip install scipy && \
+    pip install scikit-learn && \
+    \
+    rm -r /root/.cache && \
+    find /usr/lib/python3.*/ -name 'tests' -exec rm -r '{}' + && \
+    find /usr/lib/python3.*/site-packages/ -name '*.so' -print -exec sh -c 'file "{}" | grep -q "not stripped" && strip -s "{}"' \; && \
+    \
+    rm /usr/include/xlocale.h && \
+    \
+    apk del .build-dependencies
+
+# Add pycddlib and cvxopt with GLPK
+RUN cd /tmp && \
+    apk add --no-cache \
+        --virtual=.build-dependencies \
+        gcc make file binutils \
+        musl-dev python3-dev cython gmp-dev suitesparse-dev openblas-dev && \
+    apk add gmp suitesparse && \
+    \
+    pip install pycddlib && \
+    \
+    wget "ftp://ftp.gnu.org/gnu/glpk/glpk-4.65.tar.gz" && \
+    tar xzf "glpk-4.65.tar.gz" && \
+    cd "glpk-4.65" && \
+    ./configure --disable-static && \
+    make -j4 && \
+    make install-strip && \
+    CVXOPT_BLAS_LIB=openblas CVXOPT_LAPACK_LIB=openblas CVXOPT_BUILD_GLPK=1 pip install --global-option=build_ext --global-option="-I/usr/include/suitesparse" cvxopt && \
+    \
+    rm -r /root/.cache && \
+    find /usr/lib/python3.*/site-packages/ -name '*.so' -print -exec sh -c 'file "{}" | grep -q "not stripped" && strip -s "{}"' \; && \
+    \
+    apk del .build-dependencies && \
+    rm -rf /tmp/*

Makefile

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+all: build
+.PHONY: build
+build:
+	docker build --rm=true -t python-base:latest -f Dockerfile .

README.md

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-# docker-python-base
-Docker image for base python 3 support with data science packages
+Python Base Docker Image
+================
+
+Docker image for base Python 3 support with data science packages
+
+## Major Features
+- **Python 3**: with pip - Python Package Installer
+- **NumPy**: a fundamental package for scientific computing with Python.
+- **pandas**: an open source, BSD-licensed library providing high-performance, easy-to-use data structures and data analysis tools for the Python programming language.
+- **SciPy**: an open-source software for mathematics, science, and engineering.
+- **scikit-learn**: a free software machine learning library for the Python programming language. It features various classification, regression and clustering algorithms including support vector machines, random forests, gradient boosting, k-means and DBSCAN, and is designed to interoperate with the Python numerical and scientific libraries NumPy and SciPy.
+- **GLPK**: a package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems
+- **Psycopg2**: Psycopg is the most popular PostgresSQL adapter for the Python programming language. At its core it fully implements the Python DB API 2.0 specifications.
+
+## Usage
+```bash
+make build
+```
+
+-----
+
+Licensing
+=========
+MIT License