Document operational variant short form style? #158
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Variants scout
When discussing variant queries or even as part of of UI implementations frequently "short form" annotations are being used instead of parameter=value pairs; but there is no recommended style or parameter specification. One can usually see something like
chr17, 123456 A>C
the a bit nicer17:123456:A>C
etc.; and this seems fairly understandable (given that the genome edition is indicated somewhere), but:17:123456:A>AA
or17:123457:>A
; and17:123456:AA>A
or17:123457:A>
? (i.e. use of anchor bases - and other issues regarding normalization)Question Should we (e.g. through variant scouts) develop a simple schema w/ recommendations of which formats etc. to use? Outside of the specification, but as part of an "ecosystem for recommendations".
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