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RequestParameterInvalidException: Extension 'auto' unknown, cannot use dataset collection as input #18828

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galaxyproject-sentryintegration bot opened this issue Sep 17, 2024 · 1 comment

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@galaxyproject-sentryintegration

This happened on a workflow invocation where the CONVERTER_gz_to_uncompressed was used, which has auto as the output datatype which only gets overriden after the job finishes via the galaxy.json method.

Sentry Issue: GALAXY-MAIN-ZZB

RequestParameterInvalidException: Extension 'auto' unknown, cannot use dataset collection as input
(11 additional frame(s) were not displayed)
...
  File "galaxy/tools/__init__.py", line 1793, in visit_inputs
    visit_input_values(self.inputs, values, callback)
  File "galaxy/tools/parameters/__init__.py", line 211, in visit_input_values
    visit_input_values(
  File "galaxy/tools/parameters/__init__.py", line 227, in visit_input_values
    callback_helper(
  File "galaxy/tools/parameters/__init__.py", line 162, in callback_helper
    new_value = callback(**args)
  File "galaxy/tools/actions/__init__.py", line 264, in visitor
    raise RequestParameterInvalidException(

Failed to schedule WorkflowInvocation[id=786351] for Workflow[id=559721,name=New_metagenomics (imported from uploaded file)], problem occurred on WorkflowStep[index=3,type=tool,label=None,uuid=3f2b2c09-0517-4cba-a854-0cdd4af3951c,id=7445004].
@mvdbeek
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mvdbeek commented Sep 17, 2024

Could do something special just for this tool id

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