Updating workflows/bacterial_genomics/bacterial_genome_annotation from 1.1.11 to 1.1.12

Author: planemo-autoupdate

workflows/bacterial_genomics/bacterial_genome_annotation/CHANGELOG.md

@@ -1,5 +1,11 @@
 # Changelog
 
+## [1.1.12] - 2025-10-07
+
+### Automatic update
+- `toolshed.g2.bx.psu.edu/repos/iuc/tooldistillator/tooldistillator/1.0.0+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/tooldistillator/tooldistillator/1.0.1+galaxy0`
+- `toolshed.g2.bx.psu.edu/repos/iuc/tooldistillator_summarize/tooldistillator_summarize/1.0.0+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/tooldistillator_summarize/tooldistillator_summarize/1.0.1+galaxy0`
+
 ## [1.1.11] - 2025-07-21
 
 ### Automatic update

workflows/bacterial_genomics/bacterial_genome_annotation/bacterial_genome_annotation.ga

@@ -982,7 +982,7 @@
         },
         "8": {
             "annotation": "ToolDistillator extracts results from tools and creates a JSON file for each tool",
-            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/tooldistillator/tooldistillator/1.0.0+galaxy1",
+            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/tooldistillator/tooldistillator/1.0.1+galaxy0",
             "errors": null,
             "id": 8,
             "input_connections": {
@@ -1120,15 +1120,15 @@
                     "output_name": "output_json"
                 }
             },
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/tooldistillator/tooldistillator/1.0.0+galaxy1",
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/tooldistillator/tooldistillator/1.0.1+galaxy0",
             "tool_shed_repository": {
-                "changeset_revision": "c6b5c2975e51",
+                "changeset_revision": "bbdc53e9b559",
                 "name": "tooldistillator",
                 "owner": "iuc",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
             "tool_state": "{\"log\": false, \"tool_section\": {\"tools\": [{\"__index__\": 0, \"select_tool\": {\"tool_list\": \"plasmidfinder\", \"__current_case__\": 30, \"input\": {\"__class__\": \"ConnectedValue\"}, \"plasmid_result_tabular_path\": {\"__class__\": \"ConnectedValue\"}, \"genome_hit_path\": {\"__class__\": \"ConnectedValue\"}, \"plasmid_hit_path\": {\"__class__\": \"ConnectedValue\"}, \"origin\": {\"origin\": \"false\", \"__current_case__\": 1}, \"reference_database_version\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"select_tool\": {\"tool_list\": \"isescan\", \"__current_case__\": 22, \"input\": {\"__class__\": \"ConnectedValue\"}, \"summary_path\": {\"__class__\": \"ConnectedValue\"}, \"annotation_path\": {\"__class__\": \"ConnectedValue\"}, \"orf_fna_path\": {\"__class__\": \"ConnectedValue\"}, \"orf_faa_path\": {\"__class__\": \"ConnectedValue\"}, \"is_fna_path\": {\"__class__\": \"ConnectedValue\"}, \"origin\": {\"origin\": \"false\", \"__current_case__\": 1}, \"reference_database_version\": null}}, {\"__index__\": 2, \"select_tool\": {\"tool_list\": \"integronfinder2\", \"__current_case__\": 21, \"input\": {\"__class__\": \"ConnectedValue\"}, \"summary_file_path\": {\"__class__\": \"ConnectedValue\"}, \"origin\": {\"origin\": \"false\", \"__current_case__\": 1}, \"reference_database_version\": null}}, {\"__index__\": 3, \"select_tool\": {\"tool_list\": \"bakta\", \"__current_case__\": 3, \"input\": {\"__class__\": \"ConnectedValue\"}, \"annotation_tabular_path\": {\"__class__\": \"ConnectedValue\"}, \"annotation_genbank_path\": {\"__class__\": \"ConnectedValue\"}, \"annotation_embl_path\": {\"__class__\": \"ConnectedValue\"}, \"contig_sequences_path\": {\"__class__\": \"ConnectedValue\"}, \"hypothetical_protein_path\": {\"__class__\": \"ConnectedValue\"}, \"hypothetical_tabular_path\": {\"__class__\": \"ConnectedValue\"}, \"plot_file_path\": {\"__class__\": \"ConnectedValue\"}, \"summary_result_path\": {\"__class__\": \"ConnectedValue\"}, \"nucleotide_annotation_path\": {\"__class__\": \"ConnectedValue\"}, \"amino_acid_annotation_path\": {\"__class__\": \"ConnectedValue\"}, \"gff_file_path\": {\"__class__\": \"ConnectedValue\"}, \"origin\": {\"origin\": \"false\", \"__current_case__\": 1}, \"reference_database_version\": {\"__class__\": \"ConnectedValue\"}}}]}, \"__page__\": 0, \"__rerun_remap_job_id__\": null}",
-            "tool_version": "1.0.0+galaxy1",
+            "tool_version": "1.0.1+galaxy0",
             "type": "tool",
             "uuid": "678bdbfe-7a3a-4a91-8ea7-1cb17f53daa6",
             "when": null,
@@ -1142,7 +1142,7 @@
         },
         "9": {
             "annotation": "ToolDistillator summarize groups all JSON file into a unique JSON file",
-            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/tooldistillator_summarize/tooldistillator_summarize/1.0.0+galaxy1",
+            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/tooldistillator_summarize/tooldistillator_summarize/1.0.1+galaxy0",
             "errors": null,
             "id": 9,
             "input_connections": {
@@ -1180,15 +1180,15 @@
                     "output_name": "summary_json"
                 }
             },
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/tooldistillator_summarize/tooldistillator_summarize/1.0.0+galaxy1",
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/tooldistillator_summarize/tooldistillator_summarize/1.0.1+galaxy0",
             "tool_shed_repository": {
-                "changeset_revision": "3d0223265277",
+                "changeset_revision": "bbbcee71e70e",
                 "name": "tooldistillator_summarize",
                 "owner": "iuc",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
             "tool_state": "{\"summarize_data\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
-            "tool_version": "1.0.0+galaxy1",
+            "tool_version": "1.0.1+galaxy0",
             "type": "tool",
             "uuid": "3427b1f1-79ce-4ade-a350-baf15ac250c2",
             "when": null,
@@ -1209,7 +1209,7 @@
         "Annotation",
         "genome-annotation"
     ],
-    "uuid": "47a7aa1d-8cb6-4eab-a6d8-86909bca0d43",
+    "uuid": "1b8d6f72-5989-4afd-895b-4d2ad70e8819",
     "version": 1,
-    "release": "1.1.11"
+    "release": "1.1.12"
 }