Every error message gstack-brain-* can print, with problem, cause, and fix.
Search this file by the prefix after BRAIN_SYNC: or by the binary name in
the command output.
Problem. You're on a machine that has ~/.gstack-artifacts-remote.txt
(or the legacy ~/.gstack-brain-remote.txt, copied from another machine) but
no local git repo at ~/.gstack/.git.
Cause. You've set up GBrain sync elsewhere and your gstack hasn't been restored on this machine yet.
Fix.
gstack-brain-restoreThis pulls the repo into ~/.gstack/ and re-registers merge drivers.
If you don't want to restore here, dismiss the hint with:
gstack-config set artifacts_sync_mode_prompted trueProblem. Sync stopped because the secret scanner detected credential-shaped content in a staged file. The queue is preserved; nothing was pushed.
Cause. One of the pre-commit secret patterns matched the file contents — likely an AWS key, GitHub token, OpenAI key, PEM block, JWT, or bearer token embedded in JSON.
Fix (three options).
-
If it's a real secret: edit the offending file to remove the secret, then re-run any skill to retry sync.
-
If the pattern is a false positive (e.g., your learning contains a GitHub token pattern in an example string that you want to publish):
gstack-brain-sync --skip-file <path>
This permanently excludes the path from future syncs.
-
If you want to abandon this sync batch entirely (start fresh):
gstack-brain-sync --drop-queue --yes
This clears the queue without committing. Future writes will re-populate it normally.
Problem. Git push was rejected because your auth with the remote expired or is missing.
Cause. The remote is unreachable with current credentials.
Fix. Refresh auth based on your remote:
- GitHub:
gh auth status(thengh auth refreshif needed) - GitLab:
glab auth status - Other:
git remote -v+ check SSH keys or credential helper
After fixing auth, run any skill to retry sync automatically.
Problem. Push failed for a reason other than auth. The first line of git's error appears after the colon.
Cause. Could be network issue, rejected push (remote ahead), server 500, or repo access revoked.
Fix. Look at ~/.gstack/.brain-sync-status.json for more detail, or run:
cd ~/.gstack && git status && git push origin HEADto see git's full error. The queue is cleared after any push attempt, but your local commit still exists — the next skill run will retry the push.
Problem. The push was refused before anything left your machine. Every
brain-sync push writes a tamper-evident receipt to the egress ledger
(~/.gstack/security/egress.jsonl) before sending, fail-closed. The
receipt could not be written, so nothing was sent, no local commit was
made, and the queue is preserved — the next run retries the whole drain.
gstack-brain-sync --status shows EGRESS_RECEIPT_FAILED as the failure
detail.
Cause. ~/.gstack/security/ is not writable (the receipt writer creates
it when missing, so absence alone is not the cause), the disk is full, or
GSTACK_HOME points at a read-only location.
Fix.
mkdir -p ~/.gstack/security && chmod -R u+w ~/.gstack/securityThen run any skill (or gstack-brain-sync --once) to retry. Inspect the
ledger with gstack-egress list; verify its hash chain with
gstack-egress verify.
Problem. You tried to init with a remote URL that doesn't match the existing one. The command refuses to overwrite.
Cause. You already ran gstack-artifacts-init with a different remote.
Fix. Either:
- Use the existing remote: run
gstack-artifacts-initwithout--remote, or with the matching URL. - Switch remotes:
git -C ~/.gstack remote set-url origin <url>(the command's own suggestion), orgstack-brain-uninstallfirst, then re-init with the new URL. Neither deletes your data.
Problem. Init couldn't reach the git remote to verify connectivity.
Cause. Wrong URL, missing auth, network issue.
Fix. Test manually:
git ls-remote <url>If that fails, check:
- URL spelling
- GitHub:
gh auth status - GitLab:
glab auth status - Private network / VPN / DNS
Problem. Auto-repo-creation via gh repo create failed and the repo
isn't discoverable via gh repo view either.
Cause. gh is unauthenticated, a repo with that name already exists
owned by someone else, or your GitHub account hit a quota.
Fix.
gh auth statusIf unauth'd, run gh auth login. If the repo name collides, pass a different
name:
gstack-artifacts-init --remote git@github.com:YOURUSER/custom-name.gitProblem. You tried to restore from a URL that doesn't match the existing git config.
Cause. Stale .git from a previous init with a different remote.
Fix. gstack-brain-uninstall, then re-run gstack-brain-restore <url>.
Problem. You're trying to restore, but ~/.gstack/ already contains
learnings or plans that would be overwritten.
Cause. Either (a) this machine has accumulated state from a pre-sync gstack session, or (b) a previous failed restore left partial state.
Fix (three options).
-
If this machine's state should become the new truth: run
gstack-artifacts-initinstead of restore — this creates a brand-new brain repo from this machine's state. -
If you want to adopt the remote and discard this machine's state: back up
~/.gstack/projects/first, then remove the offending files and re-run restore. -
If you want to merge: there's no automatic merge for this. Manually copy learnings from
~/.gstack/into your running gstack on a machine with sync already on, then restore here.
Problem. The clone succeeded but the repo is missing .brain-allowlist
and .gitattributes.
Cause. You pointed restore at a random git repo, or someone deleted the canonical config files from the brain repo.
Fix. Verify the URL. If it's correct, run gstack-artifacts-init --remote <url> to re-seed the canonical config.
database host unreachable (<code> <host>); your gbrain config is unchanged. Fix: check network or VPN, then re-run /sync-gbrain.
Problem. /sync-gbrain skipped the code, memory and dream stages, or
/setup-gbrain reported gbrain_local_status: db-unreachable.
Cause. gbrain could not reach the database named in ~/.gbrain/config.json
because of a network error (ENOTFOUND / EAI_AGAIN in an offline sandbox, a
VPN that is down, a refused or timed-out connection). Nothing is known to be
wrong with the config, so gstack leaves it alone and keeps brain-aware skill
blocks rendered, the same way it treats a slow timeout.
Fix. Restore network access (or the VPN), then:
/sync-gbrainDo not move ~/.gbrain/config.json aside; that remediation is only for
broken-db / broken-config.
[memory-ingest] ERR: gbrain import accounted for N-1 of N staged page(s) ... Refusing to advance state on every run (a .claude-style project)
Problem. Before this release, ingest refused every batch that held a page
from a project whose slug starts with a dot (for example .claude), on every
run.
Cause. gbrain's import walker skips every path segment that starts with a dot, so the staged page was never collected.
Fix. Nothing to do after upgrading: such slugs now stage as dot-claude,
and state recorded under the old name maps to the new one. Run
/sync-gbrain once to import the pages that were stuck.
Problem. gbrain refused one staged page during /sync-gbrain's memory
stage (for example invalid frontmatter or an oversize page).
Cause. gbrain import named the page as a per-file failure (in its
--json failures list or a Skipped <path>: line). Before this release,
such pages were marked ingested and never retried.
Fix. Nothing is lost: the page is not marked ingested and is retried on
every run. If the same page keeps failing, read the error, fix the source
file it came from, then run /sync-gbrain.
Problem. gbrain said a page was imported (or unchanged), but the landing check could not find it in the source it was imported into, or found different content.
Cause. Usually a managed import that was accepted but is still
publishing (Pending: in gbrain's output), or a page gbrain skipped without
naming it.
Fix. Nothing to do; the next /sync-gbrain imports it again. If it
repeats on every run, upgrade gbrain (gstack-gbrain-install).
[memory-ingest] ERR: gbrain reported N failure(s) it did not attribute to a staged page ... Refusing to advance state.
Problem. The memory stage failed and marked nothing ingested.
Cause. gbrain counted failures it did not name (it stops printing them after five of the same kind), so gstack cannot tell which pages landed.
Fix. Re-run /sync-gbrain. After three refused runs the batch is split
in halves automatically to find the page gbrain cannot import; that page is
quarantined (next entry) and the rest import.
[memory-ingest] quarantined <slug> (<source path>): gbrain refuses every batch that contains it (...)
Problem. One page kept making gbrain refuse the whole batch.
Cause. After three refused batches, gstack imported the batch in halves until it isolated the page. Every other page was imported.
Fix. The page is retried automatically when its source file changes.
To retry now, fix or remove the source file named in the message, then run
/sync-gbrain.
[memory-ingest] reconcile: checked N, present M, re-queued K, not yet checked L (run again to continue)
Problem. Not an error. This is the one-time catch-up after upgrading: gstack re-checks transcripts it had marked ingested and re-queues the ones missing from the brain, so transcripts lost by older versions import again.
Cause. Older versions could mark a page ingested that gbrain had skipped. The upgrade records that a reconcile is pending; each ingest run then checks a bounded batch (200 entries) until done.
Fix. Nothing to do; each /sync-gbrain continues where the last one
stopped. To run it now or check progress:
gstack-memory-ingest --reconcile --dry-run # report only
gstack-memory-ingest --reconcile # re-check the next 200 (--limit N)"not yet checked" counts pages whose lookup failed (gbrain busy or
unreachable); they are never treated as missing. "unrecoverable" counts pages
missing from the brain whose transcript file no longer exists. The state file
is backed up to ~/.gstack/.transcript-ingest-state.json.pre-reconcile.bak
before each pass.
Problem. A reconcile pass was requested but could not run.
Cause. gbrain is not installed or lacks import, or the brain is a
remote-HTTP brain (its pages are staged for the brain admin's pull, so there
is nothing to check locally).
Fix. For a missing gbrain, run /setup-gbrain, then
gstack-memory-ingest --reconcile. For a remote-HTTP brain, nothing to do.
Problem. The memory stage did nothing this run.
Cause. Another ingest, reconcile or --request-reconcile holds the
state lock (~/.gstack/.transcript-ingest-state.json.lock). A lock left by a
process that no longer exists is taken over automatically.
Fix. Wait for the other run to finish, then run /sync-gbrain again.
Problem. The memory stage failed after importing.
Cause. The state file could not be written (disk full, permissions, or a directory in its place). The run fails instead of pretending it recorded progress; pages it imported are re-checked next run, which is cheap because gbrain skips unchanged content.
Fix. Free disk space or fix permissions on ~/.gstack/, then run
/sync-gbrain.
[memory-ingest] kept N unattributed transcript(s) on this machine: the brain is remote (Postgres or HTTP), ...
Problem. --include-unattributed transcripts (sessions with no git
remote) were not imported.
Cause. Transcripts that cannot be attributed to a repository go only to
the machine-local, never-federated source gstack-transcripts-unattributed.
Your brain is remote (a Postgres or Supabase database_url, or a remote-HTTP
MCP brain), so sending them would take them off this machine. They are not
marked ingested and are not written to the publishable ~/.gstack/transcripts/
staging either.
Fix. Nothing to do if that is what you want. To include such a session,
run it from a git repository with an origin remote so it is attributed.
[memory-ingest] kept N transcript page(s) for <repo> on this machine: could not register gbrain source <id> (...)
Problem. Transcripts from one repository were not imported.
Cause. gstack imports each repository's transcripts into that
repository's own gbrain source (gstack-transcripts-..., machine-local and
not federated) and registers it before the first import. The installed gbrain
refused gbrain sources add, so the pages stay local and unstamped.
Fix.
gstack-gbrain-install # upgrade gbrain
/sync-gbrain # the pages import on the next runcurated artifacts pushed to git, but gbrain source <id> has 0 indexed pages. Fix: gbrain sync --source <id>, then re-run /sync-gbrain
Problem. /sync-gbrain's brain-sync stage is ERR even though the git
push worked.
Cause. The push only moves your curated artifacts to git. gbrain indexes them separately, and the artifacts source this machine maintains reports zero pages, so searches return nothing from it. Before this release the stage said "curated artifacts pushed" and passed.
Fix.
gbrain sync --source <id>
/sync-gbrainIf it stays at zero, re-register the source with gstack-gbrain-source-wireup.
Problem. A gbrain code source points at a directory that no longer exists on this machine, usually a deleted Conductor worktree. gbrain's autopilot keeps failing on it.
Cause. Each worktree gets its own gstack-code-<repo>-<hash> source.
Deleting the worktree leaves the source behind. gstack does not remove it on
its own: its indexed pages may be the only copy of work that was never
committed, and a source can belong to another machine sharing the brain.
Fix. Review, then remove the ones gstack can prove are gone:
gstack-gbrain-sync --prune-gone-worktrees --dry-run
gstack-gbrain-sync --prune-gone-worktreesA source is removed only when its path was missing on two consecutive syncs,
its parent directory is readable, its id recomputes from this host and path
(so this machine created it), and its repository still exists but no longer
lists the worktree. Each removal is logged to ~/.gstack/.gbrain-prune.log.
Run it from the main checkout of the same repository so gstack can find the
repository. Anything it keeps prints the reason; remove such a source by hand
with gbrain sources remove <id> only if you are sure.
dream: skipped — the installed gbrain cannot run only the resolve_symbol_edges phase, and the full dream cycle costs about 35 minutes (LLM phases).
Problem. /sync-gbrain --dream (or --full) did not build the call
graph.
Cause. The call graph needs only gbrain's resolve_symbol_edges phase.
The installed gbrain cannot run that phase alone (no dream --phase, or no
such phase), and gstack no longer starts gbrain's full maintenance cycle on
its own: it takes about 35 minutes and runs LLM phases.
Fix.
gstack-gbrain-install # upgrade gbrain, then:
/sync-gbrain --dreamOr run the full cycle yourself when you have the time: gbrain dream --source <id>.
Problem. /sync-gbrain cannot tell whether this repo's call graph was
ever built, so it does not offer to build it.
Cause. The answer comes from gbrain doctor's cycle_freshness check.
gstack now reads it from gbrain doctor --json --scope=brain (the --fast
mode it used before skips that check, so it always said "unknown"). Your
installed gbrain does not report the check at all.
Fix.
gstack-gbrain-install # upgrade gbrain
/sync-gbrain --dream # or build the call graph now regardlessartifacts remote: restored <url> because <owner>/gstack-artifacts-<user> does not exist and <owner>/gstack-brain-<user> does
Problem. Printed once during upgrade. Artifact pushes had been failing
because ~/.gstack-artifacts-remote.txt named a repository that was never
created.
Cause. The v1.27.0.0 upgrade passed a bare repo name to
gh repo rename, which always fails, then rewrote the remote to the new name
anyway. This upgrade points the remote (and ~/.gstack's origin) back at
the repository that exists.
Fix. Nothing is required; pushes work again. To finish the rename:
gh repo rename gstack-artifacts-<user> --repo <owner>/gstack-brain-<user> --yes
GSTACK_MIGRATE_ASSUME_YES=1 bash ~/.claude/skills/gstack/gstack-upgrade/migrations/v1.27.0.0.shIf it instead says it could not confirm ... exists (gh is not installed or not signed in), run gh auth login and check the repository name on GitHub.
Not an error, but a common gotcha. Check in order:
gstack-brain-sync --status— is modeoff?~/.gstack/.gitexists?gstack-config get artifacts_sync_mode— should befullorartifacts-only.- The file you expect to sync — is it in the allowlist?
cat ~/.gstack/.brain-allowlist - Privacy class filter — if mode is
artifacts-only, behavioral files (timelines, developer-profile) are intentionally skipped.
If all those look right, run:
gstack-brain-sync --discover-new
gstack-brain-sync --onceto force a drain.