diff --git a/go/ql/test/experimental/CWE-285/vendor/modules.txt b/go/ql/test/experimental/CWE-285/vendor/modules.txt
index 5ad327e8bb5b..8de84fbd85d0 100644
--- a/go/ql/test/experimental/CWE-285/vendor/modules.txt
+++ b/go/ql/test/experimental/CWE-285/vendor/modules.txt
@@ -1,3 +1,3 @@
 # github.com/msteinert/pam v1.0.0
 ## explicit
-github.com/msteinert/pam
\ No newline at end of file
+github.com/msteinert/pam
diff --git a/go/ql/test/experimental/CWE-321-V2/vendor/modules.txt b/go/ql/test/experimental/CWE-321-V2/vendor/modules.txt
index eedc2bbfc925..015b30ce9a21 100644
--- a/go/ql/test/experimental/CWE-321-V2/vendor/modules.txt
+++ b/go/ql/test/experimental/CWE-321-V2/vendor/modules.txt
@@ -1,6 +1,6 @@
 # github.com/go-jose/go-jose/v3 v3.0.0
 ## explicit
-github.com/go-jose/go-jose/v3
+github.com/go-jose/go-jose/v3/jwt
 # github.com/golang-jwt/jwt/v5 v5.0.0
 ## explicit
 github.com/golang-jwt/jwt/v5
diff --git a/go/ql/test/experimental/CWE-522-DecompressionBombs/vendor/modules.txt b/go/ql/test/experimental/CWE-522-DecompressionBombs/vendor/modules.txt
index 92976a6e7e99..228cc0e318d5 100644
--- a/go/ql/test/experimental/CWE-522-DecompressionBombs/vendor/modules.txt
+++ b/go/ql/test/experimental/CWE-522-DecompressionBombs/vendor/modules.txt
@@ -3,13 +3,20 @@
 github.com/DataDog/zstd
 # github.com/dsnet/compress v0.0.1
 ## explicit
-github.com/dsnet/compress
+github.com/dsnet/compress/bzip2
+github.com/dsnet/compress/flate
 # github.com/golang/snappy v0.0.4
 ## explicit
 github.com/golang/snappy
 # github.com/klauspost/compress v1.16.6
 ## explicit
-github.com/klauspost/compress
+github.com/klauspost/compress/zstd
+github.com/klauspost/compress/snappy
+github.com/klauspost/compress/s2
+github.com/klauspost/compress/zlib
+github.com/klauspost/compress/zip
+github.com/klauspost/compress/flate
+github.com/klauspost/compress/gzip
 # github.com/klauspost/pgzip v1.2.6
 ## explicit
 github.com/klauspost/pgzip
diff --git a/go/ql/test/library-tests/semmle/go/concepts/LoggerCall/vendor/github.com/golang/glog/stub.go b/go/ql/test/library-tests/semmle/go/concepts/LoggerCall/vendor/github.com/golang/glog/stub.go
index 7c4ffefc1e87..49f90bc21afb 100644
--- a/go/ql/test/library-tests/semmle/go/concepts/LoggerCall/vendor/github.com/golang/glog/stub.go
+++ b/go/ql/test/library-tests/semmle/go/concepts/LoggerCall/vendor/github.com/golang/glog/stub.go
@@ -7,8 +7,6 @@
 // Package glog is a stub of github.com/golang/glog, generated by depstubber.
 package glog
 
-import ()
-
 func Error(_ ...interface{}) {}
 
 func ErrorDepth(_ int, _ ...interface{}) {}
diff --git a/go/ql/test/library-tests/semmle/go/concepts/LoggerCall/vendor/k8s.io/klog/stub.go b/go/ql/test/library-tests/semmle/go/concepts/LoggerCall/vendor/k8s.io/klog/stub.go
index d03572488124..0c29992abcf8 100644
--- a/go/ql/test/library-tests/semmle/go/concepts/LoggerCall/vendor/k8s.io/klog/stub.go
+++ b/go/ql/test/library-tests/semmle/go/concepts/LoggerCall/vendor/k8s.io/klog/stub.go
@@ -7,8 +7,6 @@
 // Package klog is a stub of k8s.io/klog, generated by depstubber.
 package klog
 
-import ()
-
 func Error(_ ...interface{}) {}
 
 func ErrorDepth(_ int, _ ...interface{}) {}
diff --git a/go/ql/test/library-tests/semmle/go/concepts/LoggerCall/vendor/modules.txt b/go/ql/test/library-tests/semmle/go/concepts/LoggerCall/vendor/modules.txt
index c20671b41943..da35ae80c085 100644
--- a/go/ql/test/library-tests/semmle/go/concepts/LoggerCall/vendor/modules.txt
+++ b/go/ql/test/library-tests/semmle/go/concepts/LoggerCall/vendor/modules.txt
@@ -1,14 +1,9 @@
-# github.com/github/depstubber v0.0.0-20200916130315-f3217697abd4
-## explicit
 # github.com/golang/glog v0.0.0-20160126235308-23def4e6c14b
 ## explicit
 github.com/golang/glog
 # github.com/sirupsen/logrus v1.7.0
 ## explicit
 github.com/sirupsen/logrus
-# golang.org/x/sys v0.0.0-20191026070338-33540a1f6037
-golang.org/x/sys/unix
-golang.org/x/sys/windows
 # k8s.io/klog v1.0.0
 ## explicit
 k8s.io/klog
diff --git a/go/ql/test/library-tests/semmle/go/frameworks/Beego/vendor/modules.txt b/go/ql/test/library-tests/semmle/go/frameworks/Beego/vendor/modules.txt
index bb2db0e47da3..d1bcf3037c5e 100644
--- a/go/ql/test/library-tests/semmle/go/frameworks/Beego/vendor/modules.txt
+++ b/go/ql/test/library-tests/semmle/go/frameworks/Beego/vendor/modules.txt
@@ -1,6 +1,10 @@
 # github.com/astaxie/beego v1.12.3
 ## explicit
 github.com/astaxie/beego
+github.com/astaxie/beego/context
+github.com/astaxie/beego/logs
+github.com/astaxie/beego/utils
 # github.com/beego/beego/v2 v2.1.2
 ## explicit
-github.com/beego/beego/v2
+github.com/beego/beego/v2/server/web
+github.com/beego/beego/v2/server/web/context
diff --git a/go/ql/test/library-tests/semmle/go/frameworks/ElazarlGoproxy/vendor/modules.txt b/go/ql/test/library-tests/semmle/go/frameworks/ElazarlGoproxy/vendor/modules.txt
index bf027718a74a..d560618b74da 100644
--- a/go/ql/test/library-tests/semmle/go/frameworks/ElazarlGoproxy/vendor/modules.txt
+++ b/go/ql/test/library-tests/semmle/go/frameworks/ElazarlGoproxy/vendor/modules.txt
@@ -3,3 +3,4 @@
 github.com/elazarl/goproxy
 # github.com/github/depstubber v0.0.0-20201214172518-12c3da4b7c9d
 ## explicit
+github.com/github/depstubber
diff --git a/go/ql/test/library-tests/semmle/go/frameworks/Email/vendor/github.com/sendgrid/sendgrid-go/helpers/mail/stub.go b/go/ql/test/library-tests/semmle/go/frameworks/Email/vendor/github.com/sendgrid/sendgrid-go/helpers/mail/stub.go
index cd1956cecc05..f5d9d9bbbef2 100644
--- a/go/ql/test/library-tests/semmle/go/frameworks/Email/vendor/github.com/sendgrid/sendgrid-go/helpers/mail/stub.go
+++ b/go/ql/test/library-tests/semmle/go/frameworks/Email/vendor/github.com/sendgrid/sendgrid-go/helpers/mail/stub.go
@@ -7,8 +7,6 @@
 // Package mail is a stub of github.com/sendgrid/sendgrid-go/helpers/mail, generated by depstubber.
 package mail
 
-import ()
-
 type Asm struct {
 	GroupID         int
 	GroupsToDisplay []int
diff --git a/go/ql/test/library-tests/semmle/go/frameworks/Email/vendor/modules.txt b/go/ql/test/library-tests/semmle/go/frameworks/Email/vendor/modules.txt
index 4b7525957dfc..c964e33b1f68 100644
--- a/go/ql/test/library-tests/semmle/go/frameworks/Email/vendor/modules.txt
+++ b/go/ql/test/library-tests/semmle/go/frameworks/Email/vendor/modules.txt
@@ -1,3 +1,3 @@
 # github.com/sendgrid/sendgrid-go v3.5.0+incompatible
 ## explicit
-github.com/sendgrid/sendgrid-go
+github.com/sendgrid/sendgrid-go/helpers/mail
diff --git a/go/ql/test/library-tests/semmle/go/frameworks/Gin/vendor/modules.txt b/go/ql/test/library-tests/semmle/go/frameworks/Gin/vendor/modules.txt
index 5f2816316f48..4d249b53d1ae 100644
--- a/go/ql/test/library-tests/semmle/go/frameworks/Gin/vendor/modules.txt
+++ b/go/ql/test/library-tests/semmle/go/frameworks/Gin/vendor/modules.txt
@@ -1,3 +1,4 @@
 # github.com/gin-gonic/gin v1.6.2
 ## explicit
 github.com/gin-gonic/gin
+github.com/gin-gonic/gin/binding
diff --git a/go/ql/test/library-tests/semmle/go/frameworks/GoMicro/vendor/modules.txt b/go/ql/test/library-tests/semmle/go/frameworks/GoMicro/vendor/modules.txt
index 1884e9622afa..a03262041901 100644
--- a/go/ql/test/library-tests/semmle/go/frameworks/GoMicro/vendor/modules.txt
+++ b/go/ql/test/library-tests/semmle/go/frameworks/GoMicro/vendor/modules.txt
@@ -1,6 +1,11 @@
 # go-micro.dev/v4 v4.10.2
 ## explicit
 go-micro.dev/v4
+go-micro.dev/v4/api
+go-micro.dev/v4/client
+go-micro.dev/v4/server
 # google.golang.org/protobuf v1.28.1
 ## explicit
-google.golang.org/protobuf
+google.golang.org/protobuf/proto
+google.golang.org/protobuf/reflect/protoreflect
+google.golang.org/protobuf/runtime/protoimpl
diff --git a/go/ql/test/library-tests/semmle/go/frameworks/Iris/vendor/modules.txt b/go/ql/test/library-tests/semmle/go/frameworks/Iris/vendor/modules.txt
index e3c62be74a71..8fdf3c4082d5 100644
--- a/go/ql/test/library-tests/semmle/go/frameworks/Iris/vendor/modules.txt
+++ b/go/ql/test/library-tests/semmle/go/frameworks/Iris/vendor/modules.txt
@@ -1,6 +1,6 @@
 # github.com/kataras/iris/v12 v12.2.5
 ## explicit
-github.com/kataras/iris/v12
+github.com/kataras/iris/v12/context
 # github.com/Shopify/goreferrer v0.0.0-20220729165902-8cddb4f5de06
 ## explicit
 github.com/Shopify/goreferrer
diff --git a/go/ql/test/library-tests/semmle/go/frameworks/K8sIoApiCoreV1/vendor/k8s.io/api/core/v1/stub.go b/go/ql/test/library-tests/semmle/go/frameworks/K8sIoApiCoreV1/vendor/k8s.io/api/core/v1/stub.go
index 1c9a8e0dfdd4..e5f5c4ffa01b 100644
--- a/go/ql/test/library-tests/semmle/go/frameworks/K8sIoApiCoreV1/vendor/k8s.io/api/core/v1/stub.go
+++ b/go/ql/test/library-tests/semmle/go/frameworks/K8sIoApiCoreV1/vendor/k8s.io/api/core/v1/stub.go
@@ -7,8 +7,6 @@
 // Package core is a stub of k8s.io/api/core/v1, generated by depstubber.
 package core
 
-import ()
-
 type Secret struct {
 	TypeMeta   interface{}
 	ObjectMeta interface{}
diff --git a/go/ql/test/library-tests/semmle/go/frameworks/K8sIoApiCoreV1/vendor/k8s.io/apimachinery/pkg/runtime/stub.go b/go/ql/test/library-tests/semmle/go/frameworks/K8sIoApiCoreV1/vendor/k8s.io/apimachinery/pkg/runtime/stub.go
index bb7bf0431974..2655b31d450a 100644
--- a/go/ql/test/library-tests/semmle/go/frameworks/K8sIoApiCoreV1/vendor/k8s.io/apimachinery/pkg/runtime/stub.go
+++ b/go/ql/test/library-tests/semmle/go/frameworks/K8sIoApiCoreV1/vendor/k8s.io/apimachinery/pkg/runtime/stub.go
@@ -7,8 +7,6 @@
 // Package runtime is a stub of k8s.io/apimachinery/pkg/runtime, generated by depstubber.
 package runtime
 
-import ()
-
 type ProtobufMarshaller interface {
 	MarshalTo(_ []byte) (int, error)
 }
diff --git a/go/ql/test/library-tests/semmle/go/frameworks/K8sIoApiCoreV1/vendor/modules.txt b/go/ql/test/library-tests/semmle/go/frameworks/K8sIoApiCoreV1/vendor/modules.txt
index bd3ad03a88b4..859956613d50 100644
--- a/go/ql/test/library-tests/semmle/go/frameworks/K8sIoApiCoreV1/vendor/modules.txt
+++ b/go/ql/test/library-tests/semmle/go/frameworks/K8sIoApiCoreV1/vendor/modules.txt
@@ -1,6 +1,7 @@
 # k8s.io/api v0.20.0
 ## explicit
-k8s.io/api
+k8s.io/api/core/v1
+k8s.io/apimachinery/pkg/runtime
 # k8s.io/apimachinery v0.20.0
 ## explicit
-k8s.io/apimachinery
+k8s.io/apimachinery/pkg/runtime
diff --git a/go/ql/test/library-tests/semmle/go/frameworks/K8sIoApimachineryPkgRuntime/vendor/k8s.io/apimachinery/pkg/runtime/schema/stub.go b/go/ql/test/library-tests/semmle/go/frameworks/K8sIoApimachineryPkgRuntime/vendor/k8s.io/apimachinery/pkg/runtime/schema/stub.go
index 58c86777a1cd..2d58b01f8eaa 100644
--- a/go/ql/test/library-tests/semmle/go/frameworks/K8sIoApimachineryPkgRuntime/vendor/k8s.io/apimachinery/pkg/runtime/schema/stub.go
+++ b/go/ql/test/library-tests/semmle/go/frameworks/K8sIoApimachineryPkgRuntime/vendor/k8s.io/apimachinery/pkg/runtime/schema/stub.go
@@ -7,8 +7,6 @@
 // Package schema is a stub of k8s.io/apimachinery/pkg/runtime/schema, generated by depstubber.
 package schema
 
-import ()
-
 type GroupKind struct {
 	Group string
 	Kind  string
diff --git a/go/ql/test/library-tests/semmle/go/frameworks/K8sIoApimachineryPkgRuntime/vendor/modules.txt b/go/ql/test/library-tests/semmle/go/frameworks/K8sIoApimachineryPkgRuntime/vendor/modules.txt
index 007fe13b0dec..59d5b5f7464c 100644
--- a/go/ql/test/library-tests/semmle/go/frameworks/K8sIoApimachineryPkgRuntime/vendor/modules.txt
+++ b/go/ql/test/library-tests/semmle/go/frameworks/K8sIoApimachineryPkgRuntime/vendor/modules.txt
@@ -1,3 +1,5 @@
 # k8s.io/apimachinery v0.19.4
 ## explicit
-k8s.io/apimachinery
+k8s.io/apimachinery/pkg/conversion
+k8s.io/apimachinery/pkg/runtime
+k8s.io/apimachinery/pkg/runtime/schema
diff --git a/go/ql/test/library-tests/semmle/go/frameworks/K8sIoClientGo/vendor/modules.txt b/go/ql/test/library-tests/semmle/go/frameworks/K8sIoClientGo/vendor/modules.txt
index 7c2af6245595..3b8636e54ea4 100644
--- a/go/ql/test/library-tests/semmle/go/frameworks/K8sIoClientGo/vendor/modules.txt
+++ b/go/ql/test/library-tests/semmle/go/frameworks/K8sIoClientGo/vendor/modules.txt
@@ -18,7 +18,7 @@ golang.org/x/oauth2
 golang.org/x/time
 # k8s.io/client-go v0.19.0
 ## explicit
-k8s.io/client-go
+k8s.io/client-go/kubernetes/typed/core/v1
 # k8s.io/utils v0.0.0-20201110183641-67b214c5f920
 ## explicit
 k8s.io/utils
diff --git a/go/ql/test/library-tests/semmle/go/frameworks/NoSQL/vendor/modules.txt b/go/ql/test/library-tests/semmle/go/frameworks/NoSQL/vendor/modules.txt
index efe6455326a2..94d59ce4d62a 100644
--- a/go/ql/test/library-tests/semmle/go/frameworks/NoSQL/vendor/modules.txt
+++ b/go/ql/test/library-tests/semmle/go/frameworks/NoSQL/vendor/modules.txt
@@ -1,6 +1,3 @@
-# go.mongodb.org/mongo-driver v1.3.2
-## explicit
-go.mongodb.org/mongo-driver
 # github.com/couchbase/gocb/v2 v2.2.0
 ## explicit
 github.com/couchbase/gocb/v2
@@ -10,6 +7,10 @@ github.com/google/uuid
 # github.com/opentracing/opentracing-go v1.2.0
 ## explicit
 github.com/opentracing/opentracing-go
+# go.mongodb.org/mongo-driver v1.3.2
+## explicit
+go.mongodb.org/mongo-driver/bson
+go.mongodb.org/mongo-driver/mongo
 # gopkg.in/couchbase/gocb.v1 v1.6.7
 ## explicit
 gopkg.in/couchbase/gocb.v1
diff --git a/go/ql/test/library-tests/semmle/go/frameworks/Revel/vendor/modules.txt b/go/ql/test/library-tests/semmle/go/frameworks/Revel/vendor/modules.txt
index fe1af187494a..b674df40109f 100644
--- a/go/ql/test/library-tests/semmle/go/frameworks/Revel/vendor/modules.txt
+++ b/go/ql/test/library-tests/semmle/go/frameworks/Revel/vendor/modules.txt
@@ -3,7 +3,9 @@
 github.com/go-stack/stack
 # github.com/revel/modules v1.0.0
 ## explicit
-github.com/revel/modules
+github.com/revel/modules/orm/gorp/app/controllers
+github.com/revel/modules/static/app/controllers
 # github.com/revel/revel v1.0.0
 ## explicit
 github.com/revel/revel
+github.com/revel/revel/logger
diff --git a/go/ql/test/library-tests/semmle/go/frameworks/SQL/gogf/vendor/modules.txt b/go/ql/test/library-tests/semmle/go/frameworks/SQL/gogf/vendor/modules.txt
index 72560d0da5e0..d3645e863f4b 100644
--- a/go/ql/test/library-tests/semmle/go/frameworks/SQL/gogf/vendor/modules.txt
+++ b/go/ql/test/library-tests/semmle/go/frameworks/SQL/gogf/vendor/modules.txt
@@ -1,6 +1,7 @@
 # github.com/gogf/gf v1.16.9
 ## explicit
-github.com/gogf/gf
+github.com/gogf/gf/database/gdb
+github.com/gogf/gf/frame/g
 # github.com/BurntSushi/toml v0.3.1
 ## explicit
 github.com/BurntSushi/toml
diff --git a/go/ql/test/library-tests/semmle/go/frameworks/SQL/pg.go b/go/ql/test/library-tests/semmle/go/frameworks/SQL/pg.go
index 09ffa084fe0e..7cd76f715c99 100644
--- a/go/ql/test/library-tests/semmle/go/frameworks/SQL/pg.go
+++ b/go/ql/test/library-tests/semmle/go/frameworks/SQL/pg.go
@@ -1,7 +1,7 @@
 package main
 
 //go:generate depstubber -vendor github.com/go-pg/pg Conn,DB,Tx Q
-//go:generate depstubber -vendor github.com/go-pg/pg/orm Query Q
+//go:generate depstubber -vendor github.com/go-pg/pg/orm Query,Formatter Q
 //go:generate depstubber -vendor github.com/go-pg/pg/v9 Conn,DB,Tx Q
 
 import (
diff --git a/go/ql/test/library-tests/semmle/go/frameworks/SQL/vendor/github.com/go-pg/pg/orm/stub.go b/go/ql/test/library-tests/semmle/go/frameworks/SQL/vendor/github.com/go-pg/pg/orm/stub.go
index 1d049c8a9a3c..1214ad0492da 100644
--- a/go/ql/test/library-tests/semmle/go/frameworks/SQL/vendor/github.com/go-pg/pg/orm/stub.go
+++ b/go/ql/test/library-tests/semmle/go/frameworks/SQL/vendor/github.com/go-pg/pg/orm/stub.go
@@ -2,7 +2,7 @@
 // This is a simple stub for github.com/go-pg/pg/orm, strictly for use in testing.
 
 // See the LICENSE file for information about the licensing of the original library.
-// Source: github.com/go-pg/pg/orm (exports: Query, Formatter; functions: Q)
+// Source: github.com/go-pg/pg/orm (exports: Query,Formatter; functions: Q)
 
 // Package orm is a stub of github.com/go-pg/pg/orm, generated by depstubber.
 package orm
@@ -94,6 +94,34 @@ func (_ *Field) Value(_ reflect.Value) reflect.Value {
 	return reflect.Value{}
 }
 
+type Formatter struct{}
+
+func (_ Formatter) Append(_ []byte, _ string, _ ...interface{}) []byte {
+	return nil
+}
+
+func (_ Formatter) AppendBytes(_ []byte, _ []byte, _ ...interface{}) []byte {
+	return nil
+}
+
+func (_ Formatter) FormatQuery(_ []byte, _ string, _ ...interface{}) []byte {
+	return nil
+}
+
+func (_ Formatter) Param(_ string) interface{} {
+	return nil
+}
+
+func (_ Formatter) String() string {
+	return ""
+}
+
+func (_ Formatter) WithParam(_ string, _ interface{}) Formatter {
+	return Formatter{}
+}
+
+func (_ *Formatter) SetParam(_ string, _ interface{}) {}
+
 type Method struct {
 	Index int
 }
@@ -491,18 +519,3 @@ type TableModel interface {
 	Table() *Table
 	Value() reflect.Value
 }
-
-type Formatter struct {
-}
-
-func (f Formatter) Append(dst []byte, src string, params ...interface{}) []byte {
-	return nil
-}
-
-func (f Formatter) AppendBytes(dst, src []byte, params ...interface{}) []byte {
-	return nil
-}
-
-func (f Formatter) FormatQuery(dst []byte, query string, params ...interface{}) []byte {
-	return nil
-}
diff --git a/go/ql/test/library-tests/semmle/go/frameworks/Spew/vendor/modules.txt b/go/ql/test/library-tests/semmle/go/frameworks/Spew/vendor/modules.txt
index 9e9ed5edf647..5d0fa4c56ac0 100644
--- a/go/ql/test/library-tests/semmle/go/frameworks/Spew/vendor/modules.txt
+++ b/go/ql/test/library-tests/semmle/go/frameworks/Spew/vendor/modules.txt
@@ -1,6 +1,6 @@
 # github.com/davecgh/go-spew v1.1.1
 ## explicit
-github.com/davecgh/go-spew
+github.com/davecgh/go-spew/spew
 # github.com/github/depstubber v0.0.0-20200916130315-f3217697abd4
 ## explicit
 github.com/github/depstubber
diff --git a/go/ql/test/library-tests/semmle/go/frameworks/SystemCommandExecutors/vendor/github.com/codeskyblue/go-sh/stub.go b/go/ql/test/library-tests/semmle/go/frameworks/SystemCommandExecutors/vendor/github.com/codeskyblue/go-sh/stub.go
index 229a21145693..ae0660e5633c 100644
--- a/go/ql/test/library-tests/semmle/go/frameworks/SystemCommandExecutors/vendor/github.com/codeskyblue/go-sh/stub.go
+++ b/go/ql/test/library-tests/semmle/go/frameworks/SystemCommandExecutors/vendor/github.com/codeskyblue/go-sh/stub.go
@@ -1,10 +1,11 @@
 // Code generated by depstubber. DO NOT EDIT.
 // This is a simple stub for github.com/codeskyblue/go-sh, strictly for use in testing.
 
+// See the LICENSE file for information about the licensing of the original library.
 // Source: github.com/codeskyblue/go-sh (exports: ; functions: Command,InteractiveSession)
 
-// Package go_sh is a stub of github.com/codeskyblue/go-sh, generated by depstubber.
-package go_sh
+// Package go_pkg is a stub of github.com/codeskyblue/go-sh, generated by depstubber.
+package go_pkg
 
 import (
 	io "io"
@@ -32,15 +33,11 @@ type Session struct {
 
 func (_ *Session) Alias(_ string, _ string, _ ...string) {}
 
-func (_ *Session) Call(_ string, _ ...interface{}) interface {
-	Error() string
-} {
+func (_ *Session) Call(_ string, _ ...interface{}) error {
 	return nil
 }
 
-func (_ *Session) CombinedOutput() ([]uint8, interface {
-	Error() string
-}) {
+func (_ *Session) CombinedOutput() ([]byte, error) {
 	return nil, nil
 }
 
@@ -50,15 +47,11 @@ func (_ *Session) Command(_ string, _ ...interface{}) *Session {
 
 func (_ *Session) Kill(_ os.Signal) {}
 
-func (_ *Session) Output() ([]uint8, interface {
-	Error() string
-}) {
+func (_ *Session) Output() ([]byte, error) {
 	return nil, nil
 }
 
-func (_ *Session) Run() interface {
-	Error() string
-} {
+func (_ *Session) Run() error {
 	return nil
 }
 
@@ -82,9 +75,7 @@ func (_ *Session) SetTimeout(_ time.Duration) *Session {
 	return nil
 }
 
-func (_ *Session) Start() interface {
-	Error() string
-} {
+func (_ *Session) Start() error {
 	return nil
 }
 
@@ -92,32 +83,22 @@ func (_ *Session) Test(_ string, _ string) bool {
 	return false
 }
 
-func (_ *Session) UnmarshalJSON(_ interface{}) interface {
-	Error() string
-} {
+func (_ *Session) UnmarshalJSON(_ interface{}) error {
 	return nil
 }
 
-func (_ *Session) UnmarshalXML(_ interface{}) interface {
-	Error() string
-} {
+func (_ *Session) UnmarshalXML(_ interface{}) error {
 	return nil
 }
 
-func (_ *Session) Wait() interface {
-	Error() string
-} {
+func (_ *Session) Wait() error {
 	return nil
 }
 
-func (_ *Session) WaitTimeout(_ time.Duration) interface {
-	Error() string
-} {
+func (_ *Session) WaitTimeout(_ time.Duration) error {
 	return nil
 }
 
-func (_ *Session) WriteStdout(_ string) interface {
-	Error() string
-} {
+func (_ *Session) WriteStdout(_ string) error {
 	return nil
 }
diff --git a/go/ql/test/library-tests/semmle/go/frameworks/SystemCommandExecutors/vendor/golang.org/x/crypto/ssh/stub.go b/go/ql/test/library-tests/semmle/go/frameworks/SystemCommandExecutors/vendor/golang.org/x/crypto/ssh/stub.go
index 9d1aab65e3c9..0c0c3d879bb8 100644
--- a/go/ql/test/library-tests/semmle/go/frameworks/SystemCommandExecutors/vendor/golang.org/x/crypto/ssh/stub.go
+++ b/go/ql/test/library-tests/semmle/go/frameworks/SystemCommandExecutors/vendor/golang.org/x/crypto/ssh/stub.go
@@ -1,6 +1,7 @@
 // Code generated by depstubber. DO NOT EDIT.
 // This is a simple stub for golang.org/x/crypto/ssh, strictly for use in testing.
 
+// See the LICENSE file for information about the licensing of the original library.
 // Source: golang.org/x/crypto/ssh (exports: Session; functions: )
 
 // Package ssh is a stub of golang.org/x/crypto/ssh, generated by depstubber.
@@ -16,102 +17,70 @@ type Session struct {
 	Stderr io.Writer
 }
 
-func (_ *Session) Close() interface {
-	Error() string
-} {
+func (_ *Session) Close() error {
 	return nil
 }
 
-func (_ *Session) CombinedOutput(_ string) ([]uint8, interface {
-	Error() string
-}) {
+func (_ *Session) CombinedOutput(_ string) ([]byte, error) {
 	return nil, nil
 }
 
-func (_ *Session) Output(_ string) ([]uint8, interface {
-	Error() string
-}) {
+func (_ *Session) Output(_ string) ([]byte, error) {
 	return nil, nil
 }
 
-func (_ *Session) RequestPty(_ string, _ int, _ int, _ TerminalModes) interface {
-	Error() string
-} {
+func (_ *Session) RequestPty(_ string, _ int, _ int, _ TerminalModes) error {
 	return nil
 }
 
-func (_ *Session) RequestSubsystem(_ string) interface {
-	Error() string
-} {
+func (_ *Session) RequestSubsystem(_ string) error {
 	return nil
 }
 
-func (_ *Session) Run(_ string) interface {
-	Error() string
-} {
+func (_ *Session) Run(_ string) error {
 	return nil
 }
 
-func (_ *Session) SendRequest(_ string, _ bool, _ []uint8) (bool, interface {
-	Error() string
-}) {
+func (_ *Session) SendRequest(_ string, _ bool, _ []byte) (bool, error) {
 	return false, nil
 }
 
-func (_ *Session) Setenv(_ string, _ string) interface {
-	Error() string
-} {
+func (_ *Session) Setenv(_ string, _ string) error {
 	return nil
 }
 
-func (_ *Session) Shell() interface {
-	Error() string
-} {
+func (_ *Session) Shell() error {
 	return nil
 }
 
-func (_ *Session) Signal(_ Signal) interface {
-	Error() string
-} {
+func (_ *Session) Signal(_ Signal) error {
 	return nil
 }
 
-func (_ *Session) Start(_ string) interface {
-	Error() string
-} {
+func (_ *Session) Start(_ string) error {
 	return nil
 }
 
-func (_ *Session) StderrPipe() (io.Reader, interface {
-	Error() string
-}) {
+func (_ *Session) StderrPipe() (io.Reader, error) {
 	return nil, nil
 }
 
-func (_ *Session) StdinPipe() (io.WriteCloser, interface {
-	Error() string
-}) {
+func (_ *Session) StdinPipe() (io.WriteCloser, error) {
 	return nil, nil
 }
 
-func (_ *Session) StdoutPipe() (io.Reader, interface {
-	Error() string
-}) {
+func (_ *Session) StdoutPipe() (io.Reader, error) {
 	return nil, nil
 }
 
-func (_ *Session) Wait() interface {
-	Error() string
-} {
+func (_ *Session) Wait() error {
 	return nil
 }
 
-func (_ *Session) WindowChange(_ int, _ int) interface {
-	Error() string
-} {
+func (_ *Session) WindowChange(_ int, _ int) error {
 	return nil
 }
 
 type Signal string
 
-type TerminalModes map[uint8]uint32
+type TerminalModes map[byte]uint32
diff --git a/go/ql/test/library-tests/semmle/go/frameworks/SystemCommandExecutors/vendor/modules.txt b/go/ql/test/library-tests/semmle/go/frameworks/SystemCommandExecutors/vendor/modules.txt
index 2fdb2ae4eae1..d6e69c7b2986 100644
--- a/go/ql/test/library-tests/semmle/go/frameworks/SystemCommandExecutors/vendor/modules.txt
+++ b/go/ql/test/library-tests/semmle/go/frameworks/SystemCommandExecutors/vendor/modules.txt
@@ -3,4 +3,4 @@
 github.com/codeskyblue/go-sh
 # golang.org/x/crypto v0.0.0-20200323165209-0ec3e9974c59
 ## explicit
-golang.org/x/crypto
+golang.org/x/crypto/ssh
diff --git a/go/ql/test/library-tests/semmle/go/frameworks/WebSocket/vendor/modules.txt b/go/ql/test/library-tests/semmle/go/frameworks/WebSocket/vendor/modules.txt
index 43950046ca3a..ea1d1721a315 100644
--- a/go/ql/test/library-tests/semmle/go/frameworks/WebSocket/vendor/modules.txt
+++ b/go/ql/test/library-tests/semmle/go/frameworks/WebSocket/vendor/modules.txt
@@ -9,7 +9,7 @@ github.com/gorilla/websocket
 github.com/sacOO7/gowebsocket
 # golang.org/x/net v0.0.0-20200505041828-1ed23360d12c
 ## explicit
-golang.org/x/net
+golang.org/x/net/websocket
 # nhooyr.io/websocket v1.8.5
 ## explicit
 nhooyr.io/websocket
diff --git a/go/ql/test/library-tests/semmle/go/frameworks/Zap/vendor/modules.txt b/go/ql/test/library-tests/semmle/go/frameworks/Zap/vendor/modules.txt
index 81aa5380f124..d6c25845fd46 100644
--- a/go/ql/test/library-tests/semmle/go/frameworks/Zap/vendor/modules.txt
+++ b/go/ql/test/library-tests/semmle/go/frameworks/Zap/vendor/modules.txt
@@ -1,3 +1,4 @@
 # go.uber.org/zap v1.16.0
 ## explicit
 go.uber.org/zap
+go.uber.org/zap/zapcore
diff --git a/go/ql/test/query-tests/Security/CWE-020/IncompleteHostnameRegexp/vendor/modules.txt b/go/ql/test/query-tests/Security/CWE-020/IncompleteHostnameRegexp/vendor/modules.txt
index bf027718a74a..a81e0c273fa7 100644
--- a/go/ql/test/query-tests/Security/CWE-020/IncompleteHostnameRegexp/vendor/modules.txt
+++ b/go/ql/test/query-tests/Security/CWE-020/IncompleteHostnameRegexp/vendor/modules.txt
@@ -1,5 +1,3 @@
 # github.com/elazarl/goproxy v0.0.0-20201021153353-00ad82a08272
 ## explicit
 github.com/elazarl/goproxy
-# github.com/github/depstubber v0.0.0-20201214172518-12c3da4b7c9d
-## explicit
diff --git a/go/ql/test/query-tests/Security/CWE-079/vendor/modules.txt b/go/ql/test/query-tests/Security/CWE-079/vendor/modules.txt
index 5e59711dd7b0..f61f191db597 100644
--- a/go/ql/test/query-tests/Security/CWE-079/vendor/modules.txt
+++ b/go/ql/test/query-tests/Security/CWE-079/vendor/modules.txt
@@ -6,7 +6,7 @@ github.com/gobwas/ws
 github.com/gorilla/websocket
 # golang.org/x/net v0.0.0-20200505041828-1ed23360d12c
 ## explicit
-golang.org/x/net
+golang.org/x/net/websocket
 # nhooyr.io/websocket v1.8.5
 ## explicit
 nhooyr.io/websocket
diff --git a/go/ql/test/query-tests/Security/CWE-089/vendor/go.mongodb.org/mongo-driver/bson/primitive/stub.go b/go/ql/test/query-tests/Security/CWE-089/vendor/go.mongodb.org/mongo-driver/bson/primitive/stub.go
index 6f07aaff4ee2..3349209245aa 100644
--- a/go/ql/test/query-tests/Security/CWE-089/vendor/go.mongodb.org/mongo-driver/bson/primitive/stub.go
+++ b/go/ql/test/query-tests/Security/CWE-089/vendor/go.mongodb.org/mongo-driver/bson/primitive/stub.go
@@ -7,8 +7,6 @@
 // Package primitive is a stub of go.mongodb.org/mongo-driver/bson/primitive, generated by depstubber.
 package primitive
 
-import ()
-
 type D []E
 
 func (_ D) Map() M {
diff --git a/go/ql/test/query-tests/Security/CWE-089/vendor/modules.txt b/go/ql/test/query-tests/Security/CWE-089/vendor/modules.txt
index ddbc30953a2e..020db5bbe9ca 100644
--- a/go/ql/test/query-tests/Security/CWE-089/vendor/modules.txt
+++ b/go/ql/test/query-tests/Security/CWE-089/vendor/modules.txt
@@ -3,4 +3,6 @@
 github.com/Masterminds/squirrel
 # go.mongodb.org/mongo-driver v1.3.3
 ## explicit
-go.mongodb.org/mongo-driver
+go.mongodb.org/mongo-driver/bson
+go.mongodb.org/mongo-driver/mongo
+go.mongodb.org/mongo-driver/mongo/options
diff --git a/go/ql/test/query-tests/Security/CWE-312/vendor/github.com/golang/glog/stub.go b/go/ql/test/query-tests/Security/CWE-312/vendor/github.com/golang/glog/stub.go
index cdd12b34901a..932a5e6fc257 100644
--- a/go/ql/test/query-tests/Security/CWE-312/vendor/github.com/golang/glog/stub.go
+++ b/go/ql/test/query-tests/Security/CWE-312/vendor/github.com/golang/glog/stub.go
@@ -7,6 +7,4 @@
 // Package glog is a stub of github.com/golang/glog, generated by depstubber.
 package glog
 
-import ()
-
 func Info(_ ...interface{}) {}
diff --git a/go/ql/test/query-tests/Security/CWE-312/vendor/k8s.io/klog/stub.go b/go/ql/test/query-tests/Security/CWE-312/vendor/k8s.io/klog/stub.go
index 7dbaa5001fc3..db9ede2303e3 100644
--- a/go/ql/test/query-tests/Security/CWE-312/vendor/k8s.io/klog/stub.go
+++ b/go/ql/test/query-tests/Security/CWE-312/vendor/k8s.io/klog/stub.go
@@ -7,6 +7,4 @@
 // Package klog is a stub of k8s.io/klog, generated by depstubber.
 package klog
 
-import ()
-
 func Info(_ ...interface{}) {}
diff --git a/go/ql/test/query-tests/Security/CWE-312/vendor/modules.txt b/go/ql/test/query-tests/Security/CWE-312/vendor/modules.txt
index 239424327022..aa0c56a1a6f3 100644
--- a/go/ql/test/query-tests/Security/CWE-312/vendor/modules.txt
+++ b/go/ql/test/query-tests/Security/CWE-312/vendor/modules.txt
@@ -9,7 +9,8 @@ github.com/sirupsen/logrus
 k8s.io/klog
 # github.com/golang/protobuf v1.4.2
 ## explicit
-github.com/golang/protobuf
+github.com/golang/protobuf/proto
 # google.golang.org/protobuf v1.23.0
 ## explicit
-google.golang.org/protobuf
+google.golang.org/protobuf/reflect/protoreflect
+google.golang.org/protobuf/runtime/protoimpl
diff --git a/go/ql/test/query-tests/Security/CWE-347/vendor/modules.txt b/go/ql/test/query-tests/Security/CWE-347/vendor/modules.txt
index 01144bc92497..811980fafee0 100644
--- a/go/ql/test/query-tests/Security/CWE-347/vendor/modules.txt
+++ b/go/ql/test/query-tests/Security/CWE-347/vendor/modules.txt
@@ -3,7 +3,7 @@
 github.com/gin-gonic/gin
 # github.com/go-jose/go-jose/v3 v3.0.0
 ## explicit
-github.com/go-jose/go-jose/v3
+github.com/go-jose/go-jose/v3/jwt
 # github.com/golang-jwt/jwt/v5 v5.0.0
 ## explicit
 github.com/golang-jwt/jwt/v5
diff --git a/go/ql/test/query-tests/Security/CWE-640/vendor/github.com/sendgrid/sendgrid-go/helpers/mail/stub.go b/go/ql/test/query-tests/Security/CWE-640/vendor/github.com/sendgrid/sendgrid-go/helpers/mail/stub.go
index cd1956cecc05..f5d9d9bbbef2 100644
--- a/go/ql/test/query-tests/Security/CWE-640/vendor/github.com/sendgrid/sendgrid-go/helpers/mail/stub.go
+++ b/go/ql/test/query-tests/Security/CWE-640/vendor/github.com/sendgrid/sendgrid-go/helpers/mail/stub.go
@@ -7,8 +7,6 @@
 // Package mail is a stub of github.com/sendgrid/sendgrid-go/helpers/mail, generated by depstubber.
 package mail
 
-import ()
-
 type Asm struct {
 	GroupID         int
 	GroupsToDisplay []int
diff --git a/go/ql/test/query-tests/Security/CWE-640/vendor/modules.txt b/go/ql/test/query-tests/Security/CWE-640/vendor/modules.txt
index 4b7525957dfc..c964e33b1f68 100644
--- a/go/ql/test/query-tests/Security/CWE-640/vendor/modules.txt
+++ b/go/ql/test/query-tests/Security/CWE-640/vendor/modules.txt
@@ -1,3 +1,3 @@
 # github.com/sendgrid/sendgrid-go v3.5.0+incompatible
 ## explicit
-github.com/sendgrid/sendgrid-go
+github.com/sendgrid/sendgrid-go/helpers/mail
diff --git a/go/ql/test/query-tests/Security/CWE-643/vendor/github.com/antchfx/htmlquery/stub.go b/go/ql/test/query-tests/Security/CWE-643/vendor/github.com/antchfx/htmlquery/stub.go
index 0bac0acfe55c..7a41d8f98837 100644
--- a/go/ql/test/query-tests/Security/CWE-643/vendor/github.com/antchfx/htmlquery/stub.go
+++ b/go/ql/test/query-tests/Security/CWE-643/vendor/github.com/antchfx/htmlquery/stub.go
@@ -7,8 +7,6 @@
 // Package htmlquery is a stub of github.com/antchfx/htmlquery, generated by depstubber.
 package htmlquery
 
-import ()
-
 func Find(_ interface{}, _ string) []interface{} {
 	return nil
 }
diff --git a/go/ql/test/query-tests/Security/CWE-643/vendor/github.com/antchfx/jsonquery/stub.go b/go/ql/test/query-tests/Security/CWE-643/vendor/github.com/antchfx/jsonquery/stub.go
index 2948daae031c..4abcf002faa9 100644
--- a/go/ql/test/query-tests/Security/CWE-643/vendor/github.com/antchfx/jsonquery/stub.go
+++ b/go/ql/test/query-tests/Security/CWE-643/vendor/github.com/antchfx/jsonquery/stub.go
@@ -7,8 +7,6 @@
 // Package jsonquery is a stub of github.com/antchfx/jsonquery, generated by depstubber.
 package jsonquery
 
-import ()
-
 func Find(_ *Node, _ string) []*Node {
 	return nil
 }
diff --git a/go/ql/test/query-tests/Security/CWE-643/vendor/modules.txt b/go/ql/test/query-tests/Security/CWE-643/vendor/modules.txt
index 3f70fcb344d3..36b5fdf2ae07 100644
--- a/go/ql/test/query-tests/Security/CWE-643/vendor/modules.txt
+++ b/go/ql/test/query-tests/Security/CWE-643/vendor/modules.txt
@@ -1,6 +1,7 @@
 # github.com/ChrisTrenkamp/goxpath v0.0.0-20190607011252-c5096ec8773d
 ## explicit
 github.com/ChrisTrenkamp/goxpath
+github.com/ChrisTrenkamp/goxpath/tree
 # github.com/antchfx/htmlquery v1.2.2
 ## explicit
 github.com/antchfx/htmlquery
@@ -18,10 +19,11 @@ github.com/antchfx/xpath
 github.com/go-xmlpath/xmlpath
 # github.com/jbowtie/gokogiri v0.0.0-20190301021639-37f655d3078f
 ## explicit
-github.com/jbowtie/gokogiri
+github.com/jbowtie/gokogiri/xml
+github.com/jbowtie/gokogiri/xpath
 # github.com/lestrrat-go/libxml2 v0.0.0-20231124114421-99c71026c2f5
 ## explicit
-github.com/lestrrat-go/libxml2
+github.com/lestrrat-go/libxml2/parser
 # github.com/santhosh-tekuri/xpathparser v1.0.0
 ## explicit
 github.com/santhosh-tekuri/xpathparser
diff --git a/go/ql/test/query-tests/Security/CWE-798/vendor/modules.txt b/go/ql/test/query-tests/Security/CWE-798/vendor/modules.txt
index 61fe07b45404..caa73317d564 100644
--- a/go/ql/test/query-tests/Security/CWE-798/vendor/modules.txt
+++ b/go/ql/test/query-tests/Security/CWE-798/vendor/modules.txt
@@ -6,7 +6,7 @@ github.com/appleboy/gin-jwt/v2
 github.com/cristalhq/jwt/v3
 # github.com/go-kit/kit v0.12.0
 ## explicit
-github.com/go-kit/kit
+github.com/go-kit/kit/auth/jwt
 # github.com/gogf/gf-jwt/v2 v2.0.1
 ## explicit
 github.com/gogf/gf-jwt/v2
@@ -18,13 +18,13 @@ github.com/golang-jwt/jwt/v4
 github.com/iris-contrib/middleware/jwt
 # github.com/kataras/iris/v12 v12.2.0
 ## explicit
-github.com/kataras/iris/v12
+github.com/kataras/iris/v12/middleware/jwt
 # github.com/kataras/jwt v0.1.8
 ## explicit
 github.com/kataras/jwt
 # github.com/lestrrat/go-jwx v0.9.1
 ## explicit
-github.com/lestrrat/go-jwx
+github.com/lestrrat/go-jwx/jwk
 # github.com/square/go-jose/v3 v3.0.0-20200630053402-0a67ce9b0693
 ## explicit
 github.com/square/go-jose/v3
diff --git a/go/ql/test/query-tests/Security/CWE-918/vendor/modules.txt b/go/ql/test/query-tests/Security/CWE-918/vendor/modules.txt
index 319b30b771be..a440f984681f 100644
--- a/go/ql/test/query-tests/Security/CWE-918/vendor/modules.txt
+++ b/go/ql/test/query-tests/Security/CWE-918/vendor/modules.txt
@@ -9,7 +9,7 @@ github.com/gorilla/websocket
 github.com/sacOO7/gowebsocket
 # golang.org/x/net v0.0.0-20200421231249-e086a090c8fd
 ## explicit
-golang.org/x/net
+golang.org/x/net/websocket
 # nhooyr.io/websocket v1.8.5
 ## explicit
 nhooyr.io/websocket
diff --git a/go/ql/test/query-tests/filters/ClassifyFiles/vendor/github.com/onsi/ginkgo/stub.go b/go/ql/test/query-tests/filters/ClassifyFiles/vendor/github.com/onsi/ginkgo/stub.go
index fcf8b8b5683d..20f179c90028 100644
--- a/go/ql/test/query-tests/filters/ClassifyFiles/vendor/github.com/onsi/ginkgo/stub.go
+++ b/go/ql/test/query-tests/filters/ClassifyFiles/vendor/github.com/onsi/ginkgo/stub.go
@@ -7,8 +7,6 @@
 // Package ginkgo is a stub of github.com/onsi/ginkgo, generated by depstubber.
 package ginkgo
 
-import ()
-
 func Fail(_ string, _ ...int) {}
 
 type GinkgoTestingT interface {
diff --git a/go/ql/test/query-tests/filters/ClassifyFiles/vendor/github.com/onsi/gomega/stub.go b/go/ql/test/query-tests/filters/ClassifyFiles/vendor/github.com/onsi/gomega/stub.go
index 27fa1387b46a..61c9db70ad61 100644
--- a/go/ql/test/query-tests/filters/ClassifyFiles/vendor/github.com/onsi/gomega/stub.go
+++ b/go/ql/test/query-tests/filters/ClassifyFiles/vendor/github.com/onsi/gomega/stub.go
@@ -7,6 +7,4 @@
 // Package gomega is a stub of github.com/onsi/gomega, generated by depstubber.
 package gomega
 
-import ()
-
 func RegisterFailHandler(_ interface{}) {}