vicar.bib

@article {rocke2015excess,
	author = {Rocke, David M and Ruan, Luyao and Zhang, Yilun and Gossett, J. Jared and Durbin-Johnson, Blythe and Aviran, Sharon},
	title = {Excess False Positive Rates in Methods for Differential Gene Expression Analysis using {RNA}-Seq Data},
	year = {2015},
	doi = {10.1101/020784},
	publisher = {Cold Spring Harbor Labs Journals},
	eprint = {http://www.biorxiv.org/content/early/2015/06/11/020784.full.pdf},
	journal = {bioRxiv}
}

@article{lonsdale2013genotype,
  title={The genotype-tissue expression ({GTEx}) project},
  author={Lonsdale, John and Thomas, Jeffrey and Salvatore, Mike and Phillips, Rebecca and Lo, Edmund and Shad, Saboor and Hasz, Richard and Walters, Gary and Garcia, Fernando and Young, Nancy and others},
  journal={Nature genetics},
  volume={45},
  number={6},
  pages={580--585},
  year={2013},
  doi={10.1038/ng.2653},
  publisher={Nature Publishing Group}
}

@incollection{ghosh1994some,
  title={On some {B}ayesian solutions of the {N}eyman-{S}cott problem},
  author={Ghosh, Malay},
  booktitle={Statistical Decision Theory and Related Topics V},
  pages={267--276},
  year={1994},
  publisher={Springer}
}

@article{brewster1974improving,
  title={Improving on equivariant estimators},
  author={Brewster, J-Fa and Zidek, JV},
  journal={The Annals of Statistics},
  pages={21--38},
  year={1974},
  publisher={JSTOR}
}

@article{lindsay1982conditional,
  title={Conditional score functions: some optimality results},
  author={Lindsay, Bruce},
  journal={Biometrika},
  volume={69},
  number={3},
  pages={503--512},
  year={1982},
  publisher={Biometrika Trust}
}

@article{chen2008extended,
  title={Extended {B}ayesian information criteria for model selection with large model spaces},
  author={Chen, Jiahua and Chen, Zehua},
  journal={Biometrika},
  volume={95},
  number={3},
  pages={759--771},
  year={2008},
  publisher={Biometrika Trust}
}

@article{chen2016normalization,
  title={Normalization of Single Cell {RNA} Sequencing Data Using both Control and Target Genes},
  author={Chen, Mengjie and Zhou, Xiang},
  journal={bioRxiv},
  pages={045070},
  year={2016},
  publisher={Cold Spring Harbor Labs Journals}
}


@incollection{lucas2006sparse,
  author      = {Lucas, Joe and Carvalho, Carlos and Wang, Quanli and Bild, Andrea and Nevins, JR and West, Mike},
  title       = {Sparse statistical modelling in gene expression genomics},
  editor      = {Do, Kim-Anh and M{\"u}ller, Peter and Vannucci, Marina},
  booktitle   = {Bayesian inference for gene expression and proteomics},
  publisher   = {Cambridge University Press},
  year        = {2006},
  pages       = {155--176},
  url         = {http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.64.3761}
}

@article{gagnon2012using,
  title={Using control genes to correct for unwanted variation in microarray data},
  author={Gagnon-Bartsch, Johann A and Speed, Terence P},
  journal={Biostatistics},
  volume={13},
  number={3},
  pages={539--552},
  year={2012},
  doi={10.1093/biostatistics/kxr034},
  publisher={Biometrika Trust}
}

@techreport{gagnon2013removing,
  title={Removing Unwanted Variation from High Dimensional Data with Negative Controls},
  author={Gagnon-Bartsch, Johann and Jacob, Laurent and Speed, Terence},
  year={2013},
  institution={Technical Report 820, Department of Statistics, University of California, Berkeley},
  url={http://statistics.berkeley.edu/tech-reports/820}
}

@article{leek2007capturing,
  title={Capturing heterogeneity in gene expression studies by surrogate variable analysis},
  author={Leek, Jeffrey T and Storey, John D},
  journal={PLoS Genetics},
  volume={3},
  number={9},
  pages={1724--1735},
  doi={10.1371/journal.pgen.0030161},
  year={2007}
}

@article{storey2003positive,
author = "Storey, John D.",
doi = "10.1214/aos/1074290335",
fjournal = "The Annals of Statistics",
journal = "Ann. Statist.",
month = "12",
number = "6",
pages = "2013--2035",
publisher = "The Institute of Mathematical Statistics",
title = "The positive false discovery rate: a {B}ayesian interpretation and the $q$-value",
volume = "31",
year = "2003"
}

@article{sun2012multiple,
author = "Sun, Yunting and Zhang, Nancy R. and Owen, Art B.",
doi = "10.1214/12-AOAS561",
fjournal = "The Annals of Applied Statistics",
journal = "Ann. Appl. Stat.",
month = "12",
number = "4",
pages = "1664--1688",
publisher = "The Institute of Mathematical Statistics",
title = "Multiple hypothesis testing adjusted for latent
 variables, with an application to the {AGEMAP} gene expression
 data",
volume = "6",
year = "2012"
}

@article{owen2009bi,
author = "Owen, Art B. and Perry, Patrick O.",
doi = "10.1214/08-AOAS227",
fjournal = "The Annals of Applied Statistics",
journal = "Ann. Appl. Stat.",
month = "06",
number = "2",
pages = "564--594",
publisher = "The Institute of Mathematical Statistics",
title = "Bi-cross-validation of the {SVD} and the
 nonnegative matrix factorization",
volume = "3",
year = "2009"
}

@article{wang2015confounder,
  title={Confounder Adjustment in Multiple Hypothesis Testing},
  author={Wang, Jingshu and Zhao, Qingyuan and Hastie, Trevor and Owen, Art B},
  journal={arXiv preprint arXiv:1508.04178},
  year={2015},
  url={https://arxiv.org/abs/1508.04178}
}

@article{leek2008general,
  title={A general framework for multiple testing dependence},
  author={Leek, Jeffrey T and Storey, John D},
  journal={Proceedings of the National Academy of Sciences},
  volume={105},
  number={48},
  pages={18718--18723},
  year={2008},
  doi={10.1073/pnas.0808709105},
  publisher={National Acad Sciences}
}

@article{price2006principal,
  title={Principal components analysis corrects for stratification in genome-wide association studies},
  author={Price, Alkes L and Patterson, Nick J and Plenge, Robert M and Weinblatt, Michael E and Shadick, Nancy A and Reich, David},
  journal={Nature genetics},
  volume={38},
  number={8},
  pages={904--909},
  year={2006},
  doi={10.1038/ng1847},
  publisher={Nature Publishing Group}
}

@article{friguet2009factor,
  title={A factor model approach to multiple testing under dependence},
  author={Friguet, Chlo{\'e} and Kloareg, Maela and Causeur, David},
  journal={Journal of the American Statistical Association},
  volume={104},
  number={488},
  pages={1406--1415},
  year={2009},
  publisher={Taylor \& Francis}
}

@article{lucas2010latent,
  title={Latent factor analysis to discover pathway-associated putative segmental aneuploidies in human cancers},
  author={Lucas, Joseph E and Kung, Hsiu-Ni and Chi, Jen-Tsan A},
  year={2010}
}


@article{desai2012cross,
  title={Cross-dimensional inference of dependent high-dimensional data},
  author={Desai, Keyur H and Storey, John D},
  journal={Journal of the American Statistical Association},
  volume={107},
  number={497},
  pages={135--151},
  year={2012},
  publisher={Taylor \& Francis Group}
}

@article{yang2013accounting,
  title={Accounting for non-genetic factors by low-rank representation and sparse regression for eQTL mapping},
  author={Yang, Can and Wang, Lin and Zhang, Shuqin and Zhao, Hongyu},
  journal={Bioinformatics},
  volume={29},
  number={8},
  pages={1026--1034},
  year={2013},
  publisher={Oxford Univ Press}
}

%% Bayesian methods

@inproceedings{stegle2008accounting,
  title={Accounting for non-genetic factors improves the power of eQTL studies},
  author={Stegle, Oliver and Kannan, Anitha and Durbin, Richard and Winn, John},
  booktitle={Research in Computational Molecular Biology},
  pages={411--422},
  year={2008},
  organization={Springer}
}

@article{stegle2010bayesian,
  title={A {B}ayesian framework to account for complex non-genetic factors in gene expression levels greatly increases power in eQTL studies},
  author={Stegle, Oliver and Parts, Leopold and Durbin, Richard and Winn, John},
  journal={PLoS Comput Biol},
  volume={6},
  number={5},
  pages={e1000770},
  year={2010}
}

@article{fusi2012joint,
  title={Joint modelling of confounding factors and prominent genetic regulators provides increased accuracy in genetical genomics studies},
  author={Fusi, Nicol{\'o} and Stegle, Oliver and Lawrence, Neil D},
  journal={PLoS Comput Biol},
  volume={8},
  number={1},
  pages={e1002330},
  year={2012}
}

@article{stegle2012using,
  title={Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses},
  author={Stegle, Oliver and Parts, Leopold and Piipari, Matias and Winn, John and Durbin, Richard},
  journal={Nature protocols},
  volume={7},
  number={3},
  pages={500--507},
  year={2012},
  publisher={Nature Publishing Group}
}

%% Covariance Methods
@article{kang2008accurate,
  title={Accurate discovery of expression quantitative trait loci under confounding from spurious and genuine regulatory hotspots},
  author={Kang, Hyun Min and Ye, Chun and Eskin, Eleazar},
  journal={Genetics},
  volume={180},
  number={4},
  pages={1909--1925},
  year={2008},
  publisher={Genetics Soc America}
}

@article{listgarten2010correction,
  title={Correction for hidden confounders in the genetic analysis of gene expression},
  author={Listgarten, Jennifer and Kadie, Carl and Schadt, Eric E and Heckerman, David},
  journal={Proceedings of the National Academy of Sciences},
  volume={107},
  number={38},
  pages={16465--16470},
  year={2010},
  publisher={National Acad Sciences}
}

@article{allen2012inference,
  title={Inference with transposable data: modelling the effects of row and column correlations},
  author={Allen, Genevera I and Tibshirani, Robert},
  journal={Journal of the Royal Statistical Society: Series B (Statistical Methodology)},
  volume={74},
  number={4},
  pages={721--743},
  year={2012},
  publisher={Wiley Online Library}
}

@article{allen2010transposable,
  title={Transposable regularized covariance models with an application to missing data imputation},
  author={Allen, Genevera I and Tibshirani, Robert},
  journal={The Annals of Applied Statistics},
  volume={4},
  number={2},
  pages={764--790},
  year={2010},
  doi={10.1214/09-AOAS314},
  publisher={NIH Public Access}
}

@article{lazar2012batch,
  title={Batch effect removal methods for microarray gene expression data integration: a survey},
  author={Lazar, Cosmin and Meganck, Stijn and Taminau, Jonatan and Steenhoff, David and Coletta, Alain and Molter, Colin and Weiss-Sol{\'\i}s, David Y and Duque, Robin and Bersini, Hugues and Now{\'e}, Ann},
  journal={Briefings in bioinformatics},
  pages={bbs037},
  year={2012},
  publisher={Oxford Univ Press}
}


%% other papers
@article{efron2007size,
  title={Size, power and false discovery rates},
  author={Efron, Bradley},
  journal={The Annals of Statistics},
  pages={1351--1377},
  year={2007},
  publisher={JSTOR}
}

@article{carvalho2008high,
  title={High-dimensional sparse factor modeling: applications in gene expression genomics},
  author={Carvalho, Carlos M and Chang, Jeffrey and Lucas, Joseph E and Nevins, Joseph R and Wang, Quanli and West, Mike},
  journal={Journal of the American Statistical Association},
  volume={103},
  number={484},
  year={2008}
}

@article{yu2006unified,
  title={A unified mixed-model method for association mapping that accounts for multiple levels of relatedness},
  author={Yu, Jianming and Pressoir, Gael and Briggs, William H and Bi, Irie Vroh and Yamasaki, Masanori and Doebley, John F and McMullen, Michael D and Gaut, Brandon S and Nielsen, Dahlia M and Holland, James B},
  journal={Nature genetics},
  volume={38},
  number={2},
  pages={203--208},
  year={2006},
  publisher={Nature Publishing Group}
}

@article{patterson2006population,
  title={Population structure and eigenanalysis},
  author={Patterson, Nick and Price, Alkes L and Reich, David},
  year={2006}
}

@article{kang2008efficient,
  title={Efficient control of population structure in model organism association mapping},
  author={Kang, Hyun Min and Zaitlen, Noah A and Wade, Claire M and Kirby, Andrew and Heckerman, David and Daly, Mark J and Eskin, Eleazar},
  journal={Genetics},
  volume={178},
  number={3},
  pages={1709--1723},
  year={2008},
  publisher={Genetics Soc America}
}

@article{karpievitch2009normalization,
  title={Normalization of peak intensities in bottom-up MS-based proteomics using singular value decomposition},
  author={Karpievitch, Yuliya V and Taverner, Thomas and Adkins, Joshua N and Callister, Stephen J and Anderson, Gordon A and Smith, Richard D and Dabney, Alan R},
  journal={Bioinformatics},
  volume={25},
  number={19},
  pages={2573--2580},
  year={2009},
  publisher={Oxford Univ Press}
}

@article{blum2010factor,
  title={A factor model to analyze heterogeneity in gene expression},
  author={Blum, Yuna and Le Mignon, Guillaume and Lagarrigue, Sandrine and Causeur, David},
  journal={BMC bioinformatics},
  volume={11},
  number={1},
  pages={368},
  year={2010},
  publisher={BioMed Central Ltd}
}

@article{kang2010variance,
  title={Variance component model to account for sample structure in genome-wide association studies},
  author={Kang, Hyun Min and Sul, Jae Hoon and Service, Susan K and Zaitlen, Noah A and Kong, Sit-yee and Freimer, Nelson B and Sabatti, Chiara and Eskin, Eleazar},
  journal={Nature genetics},
  volume={42},
  number={4},
  pages={348--354},
  year={2010},
  publisher={Nature Publishing Group}
}

@article{mecham2010supervised,
  title={Supervised normalization of microarrays},
  author={Mecham, Brigham H and Nelson, Peter S and Storey, John D},
  journal={Bioinformatics},
  volume={26},
  number={10},
  pages={1308--1315},
  year={2010},
  publisher={Oxford Univ Press}
}

@article{chakraborty2012surrogate,
  title={Surrogate variable analysis using partial least squares (SVA-PLS) in gene expression studies},
  author={Chakraborty, Sutirtha and Datta, Somnath and Datta, Susmita},
  journal={Bioinformatics},
  volume={28},
  number={6},
  pages={799--806},
  year={2012},
  publisher={Oxford Univ Press}
}

@article{deleforge2014high,
  title={High-dimensional regression with gaussian mixtures and partially-latent response variables},
  author={Deleforge, Antoine and Forbes, Florence and Horaud, Radu},
  journal={Statistics and Computing},
  pages={1--19},
  year={2014},
  publisher={Springer}
}

@article{mostafavi2013normalizing,
  title={Normalizing {RNA}-sequencing data by modeling hidden covariates with prior knowledge},
  author={Mostafavi, Sara and Battle, Alexis and Zhu, Xiaowei and Urban, Alexander E and Levinson, Douglas and Montgomery, Stephen B and Koller, Daphne},
  journal={PLoS One},
  volume={8},
  number={7},
  year={2013},
  publisher={Public Library of Science}
}

@article{lin2015regularization,
  title={Regularization methods for high-dimensional instrumental variables regression with an application to genetical genomics},
  author={Lin, Wei and Feng, Rui and Li, Hongzhe},
  journal={Journal of the American Statistical Association},
  volume={110},
  number={509},
  pages={270--288},
  year={2015},
  publisher={Taylor \& Francis}
}

@article {bai2012statistical,
    AUTHOR = {Bai, Jushan and Li, Kunpeng},
     TITLE = {Statistical analysis of factor models of high dimension},
   JOURNAL = {Ann. Statist.},
  FJOURNAL = {The Annals of Statistics},
    VOLUME = {40},
      YEAR = {2012},
    NUMBER = {1},
     PAGES = {436--465},
      ISSN = {0090-5364},
   MRCLASS = {62H25 (62F12)},
  MRNUMBER = {3014313},
MRREVIEWER = {Xin Yuan Song},
       DOI = {10.1214/11-AOS966},
}

@article{cook2010envelope,
  title={Envelope models for parsimonious and efficient multivariate linear regression},
  author={Cook, R Dennis and Li, Bing and Chiaromonte, Francesca},
  journal={Statist. Sinica},
  volume={20},
  number={3},
  pages={927--960},
  year={2010}
}

@article{smyth2004linear,
  title={Linear models and empirical {B}ayes methods for assessing differential expression in microarray experiments},
  author={Smyth, G. K.},
  journal={Statistical Applications in Genetics and Molecular Biology},
  volume={3},
  number={1},
  year={2004},
  doi={10.2202/1544-6115.1027}
}


@article{kuroki2014measurement,
  title={Measurement bias and effect restoration in causal inference},
  author={Kuroki, Manabu and Pearl, Judea},
  journal={Biometrika},
  volume={101},
  number={2},
  pages={423--437},
  year={2014},
  publisher={Biometrika Trust}
}

@article{grzebyk2004identification,
  title={On identification of multi-factor models with correlated residuals},
  author={Grzebyk, Michel and Wild, Pascal and Chouani{\`e}re, Dominique},
  journal={Biometrika},
  volume={91},
  number={1},
  pages={141--151},
  year={2004},
  publisher={Biometrika Trust}
}

@book{curtis2012linear,
  title={Linear algebra: an introductory approach},
  author={Curtis, Charles},
  year={2012},
  publisher={Springer Science \& Business Media}
}

@article{okamoto1973distinctness,
  title={Distinctness of the eigenvalues of a quadratic form in a multivariate sample},
  author={Okamoto, Masashi},
  journal={The Annals of Statistics},
  pages={763--765},
  year={1973},
  publisher={JSTOR}
}

@article{liang2008mixtures,
  title={Mixtures of g priors for {B}ayesian variable selection},
  author={Liang, Feng and Paulo, Rui and Molina, German and Clyde, Merlise A and Berger, Jim O},
  journal={Journal of the American Statistical Association},
  volume={103},
  number={481},
  year={2008}
}

@article{buja1992remarks,
  title={Remarks on parallel analysis},
  author={Buja, Andreas and Eyuboglu, Nermin},
  journal={Multivariate behavioral research},
  volume={27},
  number={4},
  pages={509--540},
  year={1992},
  doi={10.1207/s15327906mbr2704\_2},
  publisher={Taylor \& Francis}
}

@article{stephens2016false,
author = {Stephens, Matthew},
title = {False discovery rates: a new deal},
year = {2016},
doi = {10.1093/biostatistics/kxw041},
eprint = {http://biostatistics.oxfordjournals.org/content/early/2016/10/17/biostatistics.kxw041.full.pdf+html},
journal = {Biostatistics}
}

@article{efron2008microarrays,
  title={Microarrays, empirical {B}ayes and the two-groups model},
  author={Efron, Bradley},
  journal={Statistical science},
  volume={23},
  number={1},
  pages={1--22},
  year={2008},
  doi={10.1214/07-STS236},
  publisher={Institute of Mathematical Statistics}
}

@article{efron2004large,
  title={Large-scale simultaneous hypothesis testing},
  author={Efron, Bradley},
  journal={Journal of the American Statistical Association},
  year={2004},
  publisher={Taylor \& Francis},
  doi={10.1198/016214504000000089},
  value={99},
  pages={96--104}
}

@article{eisenberg2013human,
  title={Human housekeeping genes, revisited},
  author={Eisenberg, Eli and Levanon, Erez Y},
  journal={Trends in Genetics},
  volume={29},
  number={10},
  pages={569--574},
  year={2013},
  doi={10.1016/j.tig.2013.05.010},
  publisher={Elsevier}
}

@article{benjamini1995controlling,
  title={Controlling the false discovery rate: a practical and powerful approach to multiple testing},
  author={Benjamini, Yoav and Hochberg, Yosef},
  journal={Journal of the royal statistical society. Series B (Methodological)},
  pages={289--300},
  year={1995},
  publisher={JSTOR}
}

@article{lange1989robust,
  title={Robust statistical modeling using the t distribution},
  author={Lange, Kenneth L and Little, Roderick JA and Taylor, Jeremy MG},
  journal={Journal of the American Statistical Association},
  volume={84},
  number={408},
  pages={881--896},
  year={1989},
  publisher={Taylor \& Francis Group}
}

@article{devlin2001genomic,
  title={Genomic control, a new approach to genetic-based association studies},
  author={Devlin, B and Roeder, Kathryn and Wasserman, Larry},
  journal={Theoretical population biology},
  volume={60},
  number={3},
  pages={155--166},
  year={2001},
  publisher={Elsevier}
}


@article{yang2011genomic,
  title={Genomic inflation factors under polygenic inheritance},
  author={Yang, Jian and Weedon, Michael N and Purcell, Shaun and Lettre, Guillaume and Estrada, Karol and Willer, Cristen J and Smith, Albert V and Ingelsson, Erik and O'Connell, Jeffrey R and Mangino, Massimo},
  journal={European Journal of Human Genetics},
  volume={19},
  number={7},
  pages={807--812},
  year={2011},
  publisher={Nature Publishing Group}
}

@article{devlin2004genomic,
  title={Genomic control to the extreme},
  author={Devlin, B and Bacanu, Silviu-Alin and Roeder, Kathryn},
  journal={Nature genetics},
  volume={36},
  number={11},
  pages={1129--1130},
  year={2004},
  publisher={Nature Publishing Group}
}

@article{van2016controlling,
  title={Controlling bias and inflation in epigenome-and transcriptome-wide association studies using the empirical null distribution},
  author={van Iterson, Maarten M and van Zwet, Erik W and Slagboom, P Eline and Heijmans, Bastiaan T and Bios Consortium},
  journal={bioRxiv},
  pages={055772},
  year={2016},
  publisher={Cold Spring Harbor Labs Journals}
}

@Manual{rcoreteam,
  title        = {R: A Language and Environment for Statistical
                  Computing},
  author       = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address      = {Vienna, Austria},
  year         = 2016,
  url          = {https://www.R-project.org}
}

@article{josse2016adaptive,
  title={Adaptive shrinkage of singular values},
  author={Josse, Julie and Sardy, Sylvain},
  journal={Statistics and Computing},
  volume={26},
  number={3},
  pages={715--724},
  year={2016},
  publisher={Springer}
}

@article{candes2010matrix,
  title={Matrix completion with noise},
  author={Candes, Emmanuel J and Plan, Yaniv},
  journal={Proceedings of the IEEE},
  volume={98},
  number={6},
  pages={925--936},
  year={2010},
  doi={10.1109/JPROC.2009.2035722},
  publisher={IEEE}
}

@article{josse2016denoiser,
  title={{denoiseR}: {A} Package for Low Rank Matrix Estimation},
  author={Josse, Julie and Sardy, Sylvain and Wager, Stefan},
  journal={arXiv preprint arXiv:1602.01206},
  year={2016},
  url={https://arxiv.org/abs/1602.01206}
}


@article{hoff2007model,
    AUTHOR = {Hoff, Peter D.},
     TITLE = {Model averaging and dimension selection for the singular value
              decomposition},
   JOURNAL = {J. Amer. Statist. Assoc.},
  FJOURNAL = {Journal of the American Statistical Association},
    VOLUME = {102},
      YEAR = {2007},
    NUMBER = {478},
     PAGES = {674--685},
      ISSN = {0162-1459},
     CODEN = {JSTNAL},
   MRCLASS = {62H05 (62H25)},
  MRNUMBER = {2325118},
       DOI = {10.1198/016214506000001310},
}

@article{hoff2013bayesian,
  title={Bayesian analysis of matrix data with rstiefel},
  author={Hoff, Peter D},
  journal={arXiv preprint arXiv:1304.3673},
  year={2013}
}

@Manual{wang2015cate,
    title = {{cate}: {H}igh Dimensional Factor Analysis and Confounder Adjusted Testing
and Estimation},
    author = {Jingshu Wang and Qingyuan Zhao},
    year = {2015},
    note = {R package version 1.0.4},
    url = {https://CRAN.R-project.org/package=cate},
}

@Manual{bartsch2015ruv,
    title = {{ruv}: {D}etect and Remove Unwanted Variation using Negative Controls},
    author = {Johann Gagnon-Bartsch},
    year = {2015},
    note = {R package version 0.9.6},
    url = {https://CRAN.R-project.org/package=ruv},
}

@article{stekhoven2012missforest,
  title={{MissForest}---non-parametric missing value imputation for mixed-type data},
  author={Stekhoven, Daniel J and B{\"u}hlmann, Peter},
  journal={Bioinformatics},
  volume={28},
  number={1},
  pages={112--118},
  year={2012},
  doi={10.1093/bioinformatics/btr597},
  publisher={Oxford University Press}
}

@Manual{stekhoven2013missforest,
    title = {{missForest}:  Nonparametric Missing Value Imputation using Random Forest},
    author = {Daniel J. Stekhoven},
    year = {2013},
    note = {R package version 1.4},
    url = {https://CRAN.R-project.org/package=missForest},
  }

@book{van2012flexible,
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